FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4405, 419 aa 1>>>pF1KE4405 419 - 419 aa - 419 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.7523+/-0.000888; mu= 10.9509+/- 0.054 mean_var=102.8695+/-20.008, 0's: 0 Z-trim(108.5): 22 B-trim: 0 in 0/52 Lambda= 0.126454 statistics sampled from 10222 (10237) to 10222 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.668), E-opt: 0.2 (0.314), width: 16 Scan time: 2.490 The best scores are: opt bits E(32554) CCDS6210.1 TERF1 gene_id:7013|Hs108|chr8 ( 419) 2763 514.6 7.3e-146 CCDS6211.1 TERF1 gene_id:7013|Hs108|chr8 ( 439) 1963 368.6 6.5e-102 >>CCDS6210.1 TERF1 gene_id:7013|Hs108|chr8 (419 aa) initn: 2763 init1: 2763 opt: 2763 Z-score: 2732.2 bits: 514.6 E(32554): 7.3e-146 Smith-Waterman score: 2763; 100.0% identity (100.0% similar) in 419 aa overlap (1-419:1-419) 10 20 30 40 50 60 pF1KE4 MAEDVSSAAPSPRGCADGRDADPTEEQMAETERNDEEQFECQELLECQVQVGAPEEEEEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS62 MAEDVSSAAPSPRGCADGRDADPTEEQMAETERNDEEQFECQELLECQVQVGAPEEEEEE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 EEDAGLVAEAEAVAAGWMLDFLCLSLCRAFRDGRSEDFRRTRNSAEAIIHGLSSLTACQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS62 EEDAGLVAEAEAVAAGWMLDFLCLSLCRAFRDGRSEDFRRTRNSAEAIIHGLSSLTACQL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 RTIYICQFLTRIAAGKTLDAQFENDERITPLESALMIWGSIEKEHDKLHEEIQNLIKIQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS62 RTIYICQFLTRIAAGKTLDAQFENDERITPLESALMIWGSIEKEHDKLHEEIQNLIKIQA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 IAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHSFFQHFSYNHMMEKI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS62 IAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHSFFQHFSYNHMMEKI 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 KSYVNYVLSEKSSTFLMKAAAKVVESKRTRTITSQDKPSGNDVEMETEANLDTRKRSHKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS62 KSYVNYVLSEKSSTFLMKAAAKVVESKRTRTITSQDKPSGNDVEMETEANLDTRKRSHKN 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE4 LFLSKLQHGTQQQDLNKKERRVGTPQSTKKKKESRRATESRIPVSKSQPVTPEKHRARKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS62 LFLSKLQHGTQQQDLNKKERRVGTPQSTKKKKESRRATESRIPVSKSQPVTPEKHRARKR 310 320 330 340 350 360 370 380 390 400 410 pF1KE4 QAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSED ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS62 QAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSED 370 380 390 400 410 >>CCDS6211.1 TERF1 gene_id:7013|Hs108|chr8 (439 aa) initn: 2749 init1: 1936 opt: 1963 Z-score: 1943.1 bits: 368.6 E(32554): 6.5e-102 Smith-Waterman score: 2713; 95.4% identity (95.4% similar) in 439 aa overlap (1-419:1-439) 10 20 30 40 50 60 pF1KE4 MAEDVSSAAPSPRGCADGRDADPTEEQMAETERNDEEQFECQELLECQVQVGAPEEEEEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS62 MAEDVSSAAPSPRGCADGRDADPTEEQMAETERNDEEQFECQELLECQVQVGAPEEEEEE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 EEDAGLVAEAEAVAAGWMLDFLCLSLCRAFRDGRSEDFRRTRNSAEAIIHGLSSLTACQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS62 EEDAGLVAEAEAVAAGWMLDFLCLSLCRAFRDGRSEDFRRTRNSAEAIIHGLSSLTACQL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 RTIYICQFLTRIAAGKTLDAQFENDERITPLESALMIWGSIEKEHDKLHEEIQNLIKIQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS62 RTIYICQFLTRIAAGKTLDAQFENDERITPLESALMIWGSIEKEHDKLHEEIQNLIKIQA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 IAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHSFFQHFSYNHMMEKI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS62 IAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHSFFQHFSYNHMMEKI 190 200 210 220 230 240 250 260 270 280 290 pF1KE4 KSYVNYVLSEKSSTFLMKAAAKVVESKRTRTITSQDKPSGNDVEMETEANLDTRK----- ::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS62 KSYVNYVLSEKSSTFLMKAAAKVVESKRTRTITSQDKPSGNDVEMETEANLDTRKSVSDK 250 260 270 280 290 300 300 310 320 330 340 pF1KE4 ---------------RSHKNLFLSKLQHGTQQQDLNKKERRVGTPQSTKKKKESRRATES ::::::::::::::::::::::::::::::::::::::::::::: CCDS62 QSAVTESSEGTVSLLRSHKNLFLSKLQHGTQQQDLNKKERRVGTPQSTKKKKESRRATES 310 320 330 340 350 360 350 360 370 380 390 400 pF1KE4 RIPVSKSQPVTPEKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVML :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS62 RIPVSKSQPVTPEKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVML 370 380 390 400 410 420 410 pF1KE4 KDRWRTMKKLKLISSDSED ::::::::::::::::::: CCDS62 KDRWRTMKKLKLISSDSED 430 419 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 01:19:49 2016 done: Sun Nov 6 01:19:49 2016 Total Scan time: 2.490 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]