FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3645, 74 aa
  1>>>pF1KE3645 74 - 74 aa - 74 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0172+/-0.000494; mu= 9.3484+/- 0.030
 mean_var=61.1918+/-11.959, 0's: 0 Z-trim(114.6): 13  B-trim: 102 in 1/51
 Lambda= 0.163956
 statistics sampled from 15157 (15170) to 15157 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.846), E-opt: 0.2 (0.466), width:  16
 Scan time:  1.420

The best scores are:                                      opt bits E(32554)
CCDS5633.1 GNGT1 gene_id:2792|Hs108|chr7           (  74)  490 122.9 1.8e-29
CCDS5634.1 GNG11 gene_id:2791|Hs108|chr7           (  73)  380 96.9 1.2e-21
CCDS11545.1 GNGT2 gene_id:2793|Hs108|chr17         (  69)  294 76.6 1.5e-15


>>CCDS5633.1 GNGT1 gene_id:2792|Hs108|chr7                (74 aa)
 initn: 490 init1: 490 opt: 490  Z-score: 642.8  bits: 122.9 E(32554): 1.8e-29
Smith-Waterman score: 490; 100.0% identity (100.0% similar) in 74 aa overlap (1-74:1-74)

               10        20        30        40        50        60
pF1KE3 MPVINIEDLTEKDKLKMEVDQLKKEVTLERMLVSKCCEEVRDYVEERSGEDPLVKGIPED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MPVINIEDLTEKDKLKMEVDQLKKEVTLERMLVSKCCEEVRDYVEERSGEDPLVKGIPED
               10        20        30        40        50        60

               70    
pF1KE3 KNPFKELKGGCVIS
       ::::::::::::::
CCDS56 KNPFKELKGGCVIS
               70    

>>CCDS5634.1 GNG11 gene_id:2791|Hs108|chr7                (73 aa)
 initn: 378 init1: 350 opt: 380  Z-score: 502.3  bits: 96.9 E(32554): 1.2e-21
Smith-Waterman score: 380; 75.7% identity (93.2% similar) in 74 aa overlap (1-74:1-73)

               10        20        30        40        50        60
pF1KE3 MPVINIEDLTEKDKLKMEVDQLKKEVTLERMLVSKCCEEVRDYVEERSGEDPLVKGIPED
       ::...:::: ::.::::::.::.::: :.:. :::: ::...:.::::::::::::::::
CCDS56 MPALHIEDLPEKEKLKMEVEQLRKEVKLQRQQVSKCSEEIKNYIEERSGEDPLVKGIPED
               10        20        30        40        50        60

               70    
pF1KE3 KNPFKELKGGCVIS
       :::::: ::.::::
CCDS56 KNPFKE-KGSCVIS
                70   

>>CCDS11545.1 GNGT2 gene_id:2793|Hs108|chr17              (69 aa)
 initn: 292 init1: 260 opt: 294  Z-score: 392.7  bits: 76.6 E(32554): 1.5e-15
Smith-Waterman score: 294; 64.7% identity (86.8% similar) in 68 aa overlap (7-74:3-69)

               10        20        30        40        50        60
pF1KE3 MPVINIEDLTEKDKLKMEVDQLKKEVTLERMLVSKCCEEVRDYVEERSGEDPLVKGIPED
             .::.::: :::::.::::::   :. .::  .:...::: ..:.::..::::::
CCDS11     MAQDLSEKDLLKMEVEQLKKEVKNTRIPISKAGKEIKEYVEAQAGNDPFLKGIPED
                   10        20        30        40        50      

               70    
pF1KE3 KNPFKELKGGCVIS
       :::::: ::::.::
CCDS11 KNPFKE-KGGCLIS
         60          




74 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 00:18:16 2016 done: Mon Nov  7 00:18:17 2016
 Total Scan time:  1.420 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]