FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6121, 135 aa 1>>>pF1KE6121 135 - 135 aa - 135 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.8352+/-0.000362; mu= 13.1941+/- 0.022 mean_var=53.5908+/-10.854, 0's: 0 Z-trim(113.5): 28 B-trim: 473 in 1/49 Lambda= 0.175198 statistics sampled from 22852 (22880) to 22852 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.664), E-opt: 0.2 (0.268), width: 16 Scan time: 3.410 The best scores are: opt bits E(85289) NP_113679 (OMIM: 611866) retinol-binding protein 5 ( 135) 915 238.8 2e-63 XP_016875491 (OMIM: 611866) PREDICTED: retinol-bin ( 126) 746 196.1 1.4e-50 NP_001316383 (OMIM: 611866) retinol-binding protei ( 86) 592 157.1 5.1e-39 NP_002890 (OMIM: 180260) retinol-binding protein 1 ( 197) 548 146.1 2.3e-35 NP_443192 (OMIM: 608604) retinoid-binding protein ( 134) 485 130.1 1e-30 NP_004155 (OMIM: 180280) retinol-binding protein 2 ( 134) 460 123.8 8.2e-29 NP_001124465 (OMIM: 180260) retinol-binding protei ( 153) 346 95.0 4.3e-20 NP_001124464 (OMIM: 180260) retinol-binding protei ( 157) 345 94.8 5.3e-20 NP_001869 (OMIM: 180231) cellular retinoic acid-bi ( 138) 320 88.4 3.8e-18 XP_016855832 (OMIM: 180231) PREDICTED: cellular re ( 138) 320 88.4 3.8e-18 NP_001186652 (OMIM: 180231) cellular retinoic acid ( 138) 320 88.4 3.8e-18 NP_004369 (OMIM: 180230) cellular retinoic acid-bi ( 137) 297 82.6 2.1e-16 NP_004093 (OMIM: 134651) fatty acid-binding protei ( 133) 270 75.8 2.3e-14 NP_002668 (OMIM: 170715) myelin P2 protein [Homo s ( 132) 265 74.5 5.6e-14 XP_011539309 (OMIM: 134651) PREDICTED: fatty acid- ( 126) 249 70.5 8.8e-13 NP_001437 (OMIM: 602965) fatty acid-binding protei ( 132) 238 67.7 6.3e-12 NP_001305968 (OMIM: 602965) fatty acid-binding pro ( 166) 229 65.5 3.7e-11 NP_001435 (OMIM: 605168) fatty acid-binding protei ( 135) 220 63.2 1.5e-10 NP_001433 (OMIM: 600434) fatty acid-binding protei ( 132) 219 62.9 1.8e-10 NP_001307925 (OMIM: 134651) fatty acid-binding pro ( 144) 209 60.4 1.1e-09 NP_001305971 (OMIM: 602965) fatty acid-binding pro ( 128) 198 57.6 6.8e-09 NP_001305970 (OMIM: 602965) fatty acid-binding pro ( 97) 190 55.5 2.2e-08 NP_000125 (OMIM: 134640) fatty acid-binding protei ( 132) 132 40.9 0.00073 >>NP_113679 (OMIM: 611866) retinol-binding protein 5 iso (135 aa) initn: 915 init1: 915 opt: 915 Z-score: 1259.7 bits: 238.8 E(85289): 2e-63 Smith-Waterman score: 915; 100.0% identity (100.0% similar) in 135 aa overlap (1-135:1-135) 10 20 30 40 50 60 pF1KE6 MPPNLTGYYRFVSQKNMEDYLQALNISLAVRKIALLLKPDKEIEHQGNHMTVRTLSTFRN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_113 MPPNLTGYYRFVSQKNMEDYLQALNISLAVRKIALLLKPDKEIEHQGNHMTVRTLSTFRN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 YTVQFDVGVEFEEDLRSVDGRKCQTIVTWEEEHLVCVQKGEVPNRGWRHWLEGEMLYLEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_113 YTVQFDVGVEFEEDLRSVDGRKCQTIVTWEEEHLVCVQKGEVPNRGWRHWLEGEMLYLEL 70 80 90 100 110 120 130 pF1KE6 TARDAVCEQVFRKVR ::::::::::::::: NP_113 TARDAVCEQVFRKVR 130 >>XP_016875491 (OMIM: 611866) PREDICTED: retinol-binding (126 aa) initn: 746 init1: 746 opt: 746 Z-score: 1029.3 bits: 196.1 E(85289): 1.4e-50 Smith-Waterman score: 746; 99.1% identity (100.0% similar) in 111 aa overlap (25-135:16-126) 10 20 30 40 50 60 pF1KE6 MPPNLTGYYRFVSQKNMEDYLQALNISLAVRKIALLLKPDKEIEHQGNHMTVRTLSTFRN .::::::::::::::::::::::::::::::::::: XP_016 MMNQAQWILKPGTMADISLAVRKIALLLKPDKEIEHQGNHMTVRTLSTFRN 10 20 30 40 50 70 80 90 100 110 120 pF1KE6 YTVQFDVGVEFEEDLRSVDGRKCQTIVTWEEEHLVCVQKGEVPNRGWRHWLEGEMLYLEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 YTVQFDVGVEFEEDLRSVDGRKCQTIVTWEEEHLVCVQKGEVPNRGWRHWLEGEMLYLEL 60 70 80 90 100 110 130 pF1KE6 TARDAVCEQVFRKVR ::::::::::::::: XP_016 TARDAVCEQVFRKVR 120 >>NP_001316383 (OMIM: 611866) retinol-binding protein 5 (86 aa) initn: 592 init1: 592 opt: 592 Z-score: 821.5 bits: 157.1 E(85289): 5.1e-39 Smith-Waterman score: 592; 100.0% identity (100.0% similar) in 86 aa overlap (50-135:1-86) 20 30 40 50 60 70 pF1KE6 YLQALNISLAVRKIALLLKPDKEIEHQGNHMTVRTLSTFRNYTVQFDVGVEFEEDLRSVD :::::::::::::::::::::::::::::: NP_001 MTVRTLSTFRNYTVQFDVGVEFEEDLRSVD 10 20 30 80 90 100 110 120 130 pF1KE6 GRKCQTIVTWEEEHLVCVQKGEVPNRGWRHWLEGEMLYLELTARDAVCEQVFRKVR :::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GRKCQTIVTWEEEHLVCVQKGEVPNRGWRHWLEGEMLYLELTARDAVCEQVFRKVR 40 50 60 70 80 >>NP_002890 (OMIM: 180260) retinol-binding protein 1 iso (197 aa) initn: 587 init1: 548 opt: 548 Z-score: 755.9 bits: 146.1 E(85289): 2.3e-35 Smith-Waterman score: 548; 55.6% identity (86.7% similar) in 135 aa overlap (1-135:63-197) 10 20 30 pF1KE6 MPPNLTGYYRFVSQKNMEDYLQALNISLAV :: ..:::.... ..:.:.::.::....:. NP_002 HHPRSTGSRCPGSLQPSRPLVANWLQSLPEMPVDFTGYWKMLVNENFEEYLRALDVNVAL 40 50 60 70 80 90 40 50 60 70 80 90 pF1KE6 RKIALLLKPDKEIEHQGNHMTVRTLSTFRNYTVQFDVGVEFEEDLRSVDGRKCQTIVTWE :::: :::::::: ..:.:: .::::::::: ..:.:: :::::: ..: :::.: :.:. NP_002 RKIANLLKPDKEIVQDGDHMIIRTLSTFRNYIMDFQVGKEFEEDLTGIDDRKCMTTVSWD 100 110 120 130 140 150 100 110 120 130 pF1KE6 EEHLVCVQKGEVPNRGWRHWLEGEMLYLELTARDAVCEQVFRKVR ..: :::::: .::: .:.::. :.::. .. .::.:::.::. NP_002 GDKLQCVQKGEKEGRGWTQWIEGDELHLEMRVEGVVCKQVFKKVQ 160 170 180 190 >>NP_443192 (OMIM: 608604) retinoid-binding protein 7 [H (134 aa) initn: 498 init1: 485 opt: 485 Z-score: 672.4 bits: 130.1 E(85289): 1e-30 Smith-Waterman score: 485; 49.6% identity (82.7% similar) in 133 aa overlap (1-133:1-133) 10 20 30 40 50 60 pF1KE6 MPPNLTGYYRFVSQKNMEDYLQALNISLAVRKIALLLKPDKEIEHQGNHMTVRTLSTFRN :: .:.: . ..:. :.: :. ::.:..:.:::: ::::.: ::..:. .:..: :..:: NP_443 MPADLSGTWTLLSSDNFEGYMLALGIDFATRKIAKLLKPQKVIEQNGDSFTIHTNSSLRN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 YTVQFDVGVEFEEDLRSVDGRKCQTIVTWEEEHLVCVQKGEVPNRGWRHWLEGEMLYLEL : :.: :: ::.:: :..:.:::...: :....:.:.:::: :::: ::.::. :.::. NP_443 YFVKFKVGEEFDEDNRGLDNRKCKSLVIWDNDRLTCIQKGEKKNRGWTHWIEGDKLHLEM 70 80 90 100 110 120 130 pF1KE6 TARDAVCEQVFRKVR . ::.:.:.. NP_443 FCEGQVCKQTFQRA 130 >>NP_004155 (OMIM: 180280) retinol-binding protein 2 [Ho (134 aa) initn: 437 init1: 421 opt: 460 Z-score: 638.3 bits: 123.8 E(85289): 8.2e-29 Smith-Waterman score: 460; 51.1% identity (80.5% similar) in 133 aa overlap (1-133:1-133) 10 20 30 40 50 60 pF1KE6 MPPNLTGYYRFVSQKNMEDYLQALNISLAVRKIALLLKPDKEIEHQGNHMTVRTLSTFRN : . .: ... :..:.: :..::.:..:.::::. : : :...:... ..: ::::: NP_004 MTRDQNGTWEMESNENFEGYMKALDIDFATRKIAVRLTQTKVIDQDGDNFKTKTTSTFRN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 YTVQFDVGVEFEEDLRSVDGRKCQTIVTWEEEHLVCVQKGEVPNRGWRHWLEGEMLYLEL : :.: :::::.: .:.:.:. ...:::: . :::::::: ::::..:.::. ::::: NP_004 YDVDFTVGVEFDEYTKSLDNRHVKALVTWEGDVLVCVQKGEKENRGWKQWIEGDKLYLEL 70 80 90 100 110 120 130 pF1KE6 TARDAVCEQVFRKVR : : ::.:::.: NP_004 TCGDQVCRQVFKKK 130 >>NP_001124465 (OMIM: 180260) retinol-binding protein 1 (153 aa) initn: 371 init1: 346 opt: 346 Z-score: 481.7 bits: 95.0 E(85289): 4.3e-20 Smith-Waterman score: 346; 57.6% identity (89.4% similar) in 85 aa overlap (1-85:63-147) 10 20 30 pF1KE6 MPPNLTGYYRFVSQKNMEDYLQALNISLAV :: ..:::.... ..:.:.::.::....:. NP_001 HHPRSTGSRCPGSLQPSRPLVANWLQSLPEMPVDFTGYWKMLVNENFEEYLRALDVNVAL 40 50 60 70 80 90 40 50 60 70 80 90 pF1KE6 RKIALLLKPDKEIEHQGNHMTVRTLSTFRNYTVQFDVGVEFEEDLRSVDGRKCQTIVTWE :::: :::::::: ..:.:: .::::::::: ..:.:: :::::: ..: :::.. NP_001 RKIANLLKPDKEIVQDGDHMIIRTLSTFRNYIMDFQVGKEFEEDLTGIDDRKCMSETGFS 100 110 120 130 140 150 100 110 120 130 pF1KE6 EEHLVCVQKGEVPNRGWRHWLEGEMLYLELTARDAVCEQVFRKVR NP_001 S >>NP_001124464 (OMIM: 180260) retinol-binding protein 1 (157 aa) initn: 370 init1: 345 opt: 345 Z-score: 480.1 bits: 94.8 E(85289): 5.3e-20 Smith-Waterman score: 345; 57.5% identity (88.5% similar) in 87 aa overlap (1-87:63-149) 10 20 30 pF1KE6 MPPNLTGYYRFVSQKNMEDYLQALNISLAV :: ..:::.... ..:.:.::.::....:. NP_001 HHPRSTGSRCPGSLQPSRPLVANWLQSLPEMPVDFTGYWKMLVNENFEEYLRALDVNVAL 40 50 60 70 80 90 40 50 60 70 80 90 pF1KE6 RKIALLLKPDKEIEHQGNHMTVRTLSTFRNYTVQFDVGVEFEEDLRSVDGRKCQTIVTWE :::: :::::::: ..:.:: .::::::::: ..:.:: :::::: ..: :::.. : NP_001 RKIANLLKPDKEIVQDGDHMIIRTLSTFRNYIMDFQVGKEFEEDLTGIDDRKCMAGVQSR 100 110 120 130 140 150 100 110 120 130 pF1KE6 EEHLVCVQKGEVPNRGWRHWLEGEMLYLELTARDAVCEQVFRKVR NP_001 DLSSL >>NP_001869 (OMIM: 180231) cellular retinoic acid-bindin (138 aa) initn: 306 init1: 165 opt: 320 Z-score: 446.8 bits: 88.4 E(85289): 3.8e-18 Smith-Waterman score: 320; 38.7% identity (72.3% similar) in 137 aa overlap (3-131:2-135) 10 20 30 40 50 pF1KE6 MPPNLTGYYRFVSQKNMEDYLQALNISLAVRKIALLL--KPDKEIEHQGNHMTVRTLSTF ::..: .... ..:.:. :..:.... .::::. :: ::...:. . ..: .: NP_001 MPNFSGNWKIIRSENFEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKTSTTV 10 20 30 40 50 60 70 80 90 100 110 pF1KE6 RNYTVQFDVGVEFEEDLRSVDGRKCQTIVTWEEEH-LVCVQK---GEVPNRGWRHWL--E :. ..: :: :::: ..:::: :...: :: :. .:: :: :: :. .: . : . NP_001 RTTEINFKVGEEFEE--QTVDGRPCKSLVKWESENKMVCEQKLLKGEGPKTSWTRELTND 60 70 80 90 100 110 120 130 pF1KE6 GEMLYLELTARDAVCEQVFRKVR ::.. : .:: :.:: .:. NP_001 GELI-LTMTADDVVCTRVYVRE 120 130 >>XP_016855832 (OMIM: 180231) PREDICTED: cellular retino (138 aa) initn: 306 init1: 165 opt: 320 Z-score: 446.8 bits: 88.4 E(85289): 3.8e-18 Smith-Waterman score: 320; 38.7% identity (72.3% similar) in 137 aa overlap (3-131:2-135) 10 20 30 40 50 pF1KE6 MPPNLTGYYRFVSQKNMEDYLQALNISLAVRKIALLL--KPDKEIEHQGNHMTVRTLSTF ::..: .... ..:.:. :..:.... .::::. :: ::...:. . ..: .: XP_016 MPNFSGNWKIIRSENFEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKTSTTV 10 20 30 40 50 60 70 80 90 100 110 pF1KE6 RNYTVQFDVGVEFEEDLRSVDGRKCQTIVTWEEEH-LVCVQK---GEVPNRGWRHWL--E :. ..: :: :::: ..:::: :...: :: :. .:: :: :: :. .: . : . XP_016 RTTEINFKVGEEFEE--QTVDGRPCKSLVKWESENKMVCEQKLLKGEGPKTSWTRELTND 60 70 80 90 100 110 120 130 pF1KE6 GEMLYLELTARDAVCEQVFRKVR ::.. : .:: :.:: .:. XP_016 GELI-LTMTADDVVCTRVYVRE 120 130 135 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 09:38:03 2016 done: Tue Nov 8 09:38:04 2016 Total Scan time: 3.410 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]