FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4336, 347 aa 1>>>pF1KE4336 347 - 347 aa - 347 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2466+/-0.000372; mu= 16.3641+/- 0.023 mean_var=63.2223+/-13.203, 0's: 0 Z-trim(113.7): 18 B-trim: 184 in 1/50 Lambda= 0.161302 statistics sampled from 23168 (23182) to 23168 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.658), E-opt: 0.2 (0.272), width: 16 Scan time: 7.900 The best scores are: opt bits E(85289) XP_011536306 (OMIM: 124050,181500) PREDICTED: D-am ( 347) 2415 570.6 1.7e-162 NP_001908 (OMIM: 124050,181500) D-amino-acid oxida ( 347) 2415 570.6 1.7e-162 XP_011536307 (OMIM: 124050,181500) PREDICTED: D-am ( 347) 2415 570.6 1.7e-162 XP_005268749 (OMIM: 124050,181500) PREDICTED: D-am ( 325) 1366 326.5 5e-89 NP_003640 (OMIM: 124450) D-aspartate oxidase isofo ( 369) 852 206.9 5.6e-53 NP_004023 (OMIM: 124450) D-aspartate oxidase isofo ( 310) 469 117.8 3.3e-26 >>XP_011536306 (OMIM: 124050,181500) PREDICTED: D-amino- (347 aa) initn: 2415 init1: 2415 opt: 2415 Z-score: 3038.2 bits: 570.6 E(85289): 1.7e-162 Smith-Waterman score: 2415; 100.0% identity (100.0% similar) in 347 aa overlap (1-347:1-347) 10 20 30 40 50 60 pF1KE4 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLTTTDVAAGLWQPYLSDPN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLTTTDVAAGLWQPYLSDPN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 NPQEADWSQQTFDYLLSHVHSPNAENLGLFLISGYNLFHEAIPDPSWKDTVLGFRKLTPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 NPQEADWSQQTFDYLLSHVHSPNAENLGLFLISGYNLFHEAIPDPSWKDTVLGFRKLTPR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 ELDMFPDYGYGWFHTSLILEGKNYLQWLTERLTERGVKFFQRKVESFEEVAREGADVIVN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 ELDMFPDYGYGWFHTSLILEGKNYLQWLTERLTERGVKFFQRKVESFEEVAREGADVIVN 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 CTGVWAGALQRDPLLQPGRGQIMKVDAPWMKHFILTHDPERGIYNSPYIIPGTQTVTLGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 CTGVWAGALQRDPLLQPGRGQIMKVDAPWMKHFILTHDPERGIYNSPYIIPGTQTVTLGG 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 IFQLGNWSELNNIQDHNTIWEGCCRLEPTLKNARIIGERTGFRPVRPQIRLEREQLRTGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 IFQLGNWSELNNIQDHNTIWEGCCRLEPTLKNARIIGERTGFRPVRPQIRLEREQLRTGP 250 260 270 280 290 300 310 320 330 340 pF1KE4 SNTEVIHNYGHGGYGLTIHWGCALEAAKLFGRILEEKKLSRMPPSHL ::::::::::::::::::::::::::::::::::::::::::::::: XP_011 SNTEVIHNYGHGGYGLTIHWGCALEAAKLFGRILEEKKLSRMPPSHL 310 320 330 340 >>NP_001908 (OMIM: 124050,181500) D-amino-acid oxidase [ (347 aa) initn: 2415 init1: 2415 opt: 2415 Z-score: 3038.2 bits: 570.6 E(85289): 1.7e-162 Smith-Waterman score: 2415; 100.0% identity (100.0% similar) in 347 aa overlap (1-347:1-347) 10 20 30 40 50 60 pF1KE4 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLTTTDVAAGLWQPYLSDPN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLTTTDVAAGLWQPYLSDPN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 NPQEADWSQQTFDYLLSHVHSPNAENLGLFLISGYNLFHEAIPDPSWKDTVLGFRKLTPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 NPQEADWSQQTFDYLLSHVHSPNAENLGLFLISGYNLFHEAIPDPSWKDTVLGFRKLTPR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 ELDMFPDYGYGWFHTSLILEGKNYLQWLTERLTERGVKFFQRKVESFEEVAREGADVIVN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ELDMFPDYGYGWFHTSLILEGKNYLQWLTERLTERGVKFFQRKVESFEEVAREGADVIVN 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 CTGVWAGALQRDPLLQPGRGQIMKVDAPWMKHFILTHDPERGIYNSPYIIPGTQTVTLGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 CTGVWAGALQRDPLLQPGRGQIMKVDAPWMKHFILTHDPERGIYNSPYIIPGTQTVTLGG 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 IFQLGNWSELNNIQDHNTIWEGCCRLEPTLKNARIIGERTGFRPVRPQIRLEREQLRTGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IFQLGNWSELNNIQDHNTIWEGCCRLEPTLKNARIIGERTGFRPVRPQIRLEREQLRTGP 250 260 270 280 290 300 310 320 330 340 pF1KE4 SNTEVIHNYGHGGYGLTIHWGCALEAAKLFGRILEEKKLSRMPPSHL ::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SNTEVIHNYGHGGYGLTIHWGCALEAAKLFGRILEEKKLSRMPPSHL 310 320 330 340 >>XP_011536307 (OMIM: 124050,181500) PREDICTED: D-amino- (347 aa) initn: 2415 init1: 2415 opt: 2415 Z-score: 3038.2 bits: 570.6 E(85289): 1.7e-162 Smith-Waterman score: 2415; 100.0% identity (100.0% similar) in 347 aa overlap (1-347:1-347) 10 20 30 40 50 60 pF1KE4 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLTTTDVAAGLWQPYLSDPN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLTTTDVAAGLWQPYLSDPN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 NPQEADWSQQTFDYLLSHVHSPNAENLGLFLISGYNLFHEAIPDPSWKDTVLGFRKLTPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 NPQEADWSQQTFDYLLSHVHSPNAENLGLFLISGYNLFHEAIPDPSWKDTVLGFRKLTPR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 ELDMFPDYGYGWFHTSLILEGKNYLQWLTERLTERGVKFFQRKVESFEEVAREGADVIVN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 ELDMFPDYGYGWFHTSLILEGKNYLQWLTERLTERGVKFFQRKVESFEEVAREGADVIVN 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 CTGVWAGALQRDPLLQPGRGQIMKVDAPWMKHFILTHDPERGIYNSPYIIPGTQTVTLGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 CTGVWAGALQRDPLLQPGRGQIMKVDAPWMKHFILTHDPERGIYNSPYIIPGTQTVTLGG 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 IFQLGNWSELNNIQDHNTIWEGCCRLEPTLKNARIIGERTGFRPVRPQIRLEREQLRTGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 IFQLGNWSELNNIQDHNTIWEGCCRLEPTLKNARIIGERTGFRPVRPQIRLEREQLRTGP 250 260 270 280 290 300 310 320 330 340 pF1KE4 SNTEVIHNYGHGGYGLTIHWGCALEAAKLFGRILEEKKLSRMPPSHL ::::::::::::::::::::::::::::::::::::::::::::::: XP_011 SNTEVIHNYGHGGYGLTIHWGCALEAAKLFGRILEEKKLSRMPPSHL 310 320 330 340 >>XP_005268749 (OMIM: 124050,181500) PREDICTED: D-amino- (325 aa) initn: 2242 init1: 1366 opt: 1366 Z-score: 1719.4 bits: 326.5 E(85289): 5e-89 Smith-Waterman score: 2202; 93.7% identity (93.7% similar) in 347 aa overlap (1-347:1-325) 10 20 30 40 50 60 pF1KE4 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLTTTDVAAGLWQPYLSDPN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLTTTDVAAGLWQPYLSDPN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 NPQEADWSQQTFDYLLSHVHSPNAENLGLFLISGYNLFHEAIPDPSWKDTVLGFRKLTPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 NPQEADWSQQTFDYLLSHVHSPNAENLGLFLISGYNLFHEAIPDPSWKDTVLGFRKLTPR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 ELDMFPDYGYGWFHTSLILEGKNYLQWLTERLTERGVKFFQRKVESFEEVAREGADVIVN ::::::::: ::::::::::::::::::::::::::::: XP_005 ELDMFPDYG----------------------LTERGVKFFQRKVESFEEVAREGADVIVN 130 140 150 190 200 210 220 230 240 pF1KE4 CTGVWAGALQRDPLLQPGRGQIMKVDAPWMKHFILTHDPERGIYNSPYIIPGTQTVTLGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 CTGVWAGALQRDPLLQPGRGQIMKVDAPWMKHFILTHDPERGIYNSPYIIPGTQTVTLGG 160 170 180 190 200 210 250 260 270 280 290 300 pF1KE4 IFQLGNWSELNNIQDHNTIWEGCCRLEPTLKNARIIGERTGFRPVRPQIRLEREQLRTGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 IFQLGNWSELNNIQDHNTIWEGCCRLEPTLKNARIIGERTGFRPVRPQIRLEREQLRTGP 220 230 240 250 260 270 310 320 330 340 pF1KE4 SNTEVIHNYGHGGYGLTIHWGCALEAAKLFGRILEEKKLSRMPPSHL ::::::::::::::::::::::::::::::::::::::::::::::: XP_005 SNTEVIHNYGHGGYGLTIHWGCALEAAKLFGRILEEKKLSRMPPSHL 280 290 300 310 320 >>NP_003640 (OMIM: 124450) D-aspartate oxidase isoform a (369 aa) initn: 716 init1: 334 opt: 852 Z-score: 1072.1 bits: 206.9 E(85289): 5.6e-53 Smith-Waterman score: 852; 39.6% identity (66.4% similar) in 351 aa overlap (2-347:33-369) 10 20 30 pF1KE4 MRVVVIGAGVIGLSTALCIHERYHSVLQP-L :..:.::::.:::::.:: : : : NP_003 PARHWETRFGARDFGGFQDCFFRDRLMDTARIAVVGAGVVGLSTAVCI-----SKLVPRC 10 20 30 40 50 40 50 60 70 80 pF1KE4 DIKVYADRFTPLTTTDVAAGLWQPYLSDPNNP--QEADWSQQTFDYLLSHVHSPNAENLG .. . .:.::: ::.:::::. :. . :..: . .: ..::..:.. ..: .: . : NP_003 SVTIISDKFTPDTTSDVAAGMLIPH-TYPDTPIHTQKQWFRETFNHLFAIANSAEAGDAG 60 70 80 90 100 110 90 100 110 120 130 140 pF1KE4 LFLISGYNLFHEAIPD--PSWKDTVLGFRKLTPRELDMFPDYGYGWFHTSLILEGKNYLQ . :.::...:. . . : : :.::::::.: :: ::.: .: :.: : :: NP_003 VHLVSGWQIFQSTPTEEVPFWADVVLGFRKMTEAELKKFPQYVFGQAFTTLKCECPAYLP 120 130 140 150 160 170 150 160 170 180 190 200 pF1KE4 WLTERLTERGVKFFQRKVESFEEVAREGADVIVNCTGVWAGALQRDPLLQPGRGQIMKVD :: .:. : . :..:.. :. . . :..:::.:. . : : . : :::...:. NP_003 WLEKRIKGSGGWTLTRRIEDLWEL-HPSFDIVVNCSGLGSRQLAGDSKIFPVRGQVLQVQ 180 190 200 210 220 230 210 220 230 240 250 260 pF1KE4 APWMKHFILTHDPERGIYNSPYIIPGTQTVTLGGIFQLGNWSELNNIQDHNTIWEGCCRL :::..::: : . :: :::. ::::: : :.:. . .. : :: : NP_003 APWVEHFI------RDGSGLTYIYPGTSHVTLGGTRQKGDWNLSPDAENSREILSRCCAL 240 250 260 270 280 270 280 290 300 310 320 pF1KE4 EPTLKNARIIGERTGFRPVRPQIRLEREQLRTGPSNTEVIHNYGHGGYGLTIHWGCALEA ::.:..: : :..:.:: :: .::. : : . :.:.::::. :...::: :::: NP_003 EPSLHGACNIREKVGLRPYRPGVRLQTELLARDGQRLPVVHHYGHGSGGISVHWGTALEA 290 300 310 320 330 340 330 340 pF1KE4 AKLFGRILEEKKLSRMPPSHL :.: .. .. . . .: :.: NP_003 ARLVSECVHALR-TPIPKSNL 350 360 >>NP_004023 (OMIM: 124450) D-aspartate oxidase isoform b (310 aa) initn: 600 init1: 334 opt: 469 Z-score: 591.6 bits: 117.8 E(85289): 3.3e-26 Smith-Waterman score: 588; 33.5% identity (57.0% similar) in 349 aa overlap (2-347:33-310) 10 20 30 pF1KE4 MRVVVIGAGVIGLSTALCIHERYHSVLQP-L :..:.::::.:::::.:: : : : NP_004 PARHWETRFGARDFGGFQDCFFRDRLMDTARIAVVGAGVVGLSTAVCI-----SKLVPRC 10 20 30 40 50 40 50 60 70 80 pF1KE4 DIKVYADRFTPLTTTDVAAGLWQPYLSDPNNP--QEADWSQQTFDYLLSHVHSPNAENLG .. . .:.::: ::.:::::. :. . :..: . .: ..::..:.. ..: .: . : NP_004 SVTIISDKFTPDTTSDVAAGMLIPH-TYPDTPIHTQKQWFRETFNHLFAIANSAEAGDAG 60 70 80 90 100 110 90 100 110 120 130 140 pF1KE4 LFLISGYNLFHEAIPDPSWKDTVLGFRKLTPRELDMFPDYGYGWFHTSLILEGKNYLQWL . :.:: . : . :: : NP_004 VHLVSG----------------IKG---------------SGGWTLT------------- 120 130 150 160 170 180 190 200 pF1KE4 TERLTERGVKFFQRKVESFEEVAREGADVIVNCTGVWAGALQRDPLLQPGRGQIMKVDAP :..:.. :. . . :..:::.:. . : : . : :::...:.:: NP_004 -------------RRIEDLWEL-HPSFDIVVNCSGLGSRQLAGDSKIFPVRGQVLQVQAP 140 150 160 170 210 220 230 240 250 260 pF1KE4 WMKHFILTHDPERGIYNSPYIIPGTQTVTLGGIFQLGNWSELNNIQDHNTIWEGCCRLEP :..::: : . :: :::. ::::: : :.:. . .. : :: ::: NP_004 WVEHFI------RDGSGLTYIYPGTSHVTLGGTRQKGDWNLSPDAENSREILSRCCALEP 180 190 200 210 220 230 270 280 290 300 310 320 pF1KE4 TLKNARIIGERTGFRPVRPQIRLEREQLRTGPSNTEVIHNYGHGGYGLTIHWGCALEAAK .:..: : :..:.:: :: .::. : : . :.:.::::. :...::: :::::. NP_004 SLHGACNIREKVGLRPYRPGVRLQTELLARDGQRLPVVHHYGHGSGGISVHWGTALEAAR 240 250 260 270 280 290 330 340 pF1KE4 LFGRILEEKKLSRMPPSHL : .. .. . . .: :.: NP_004 LVSECVHALR-TPIPKSNL 300 310 347 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 02:13:15 2016 done: Sun Nov 6 02:13:16 2016 Total Scan time: 7.900 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]