FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4336, 347 aa 1>>>pF1KE4336 347 - 347 aa - 347 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.7253+/-0.000798; mu= 13.5339+/- 0.048 mean_var=61.7475+/-12.700, 0's: 0 Z-trim(107.3): 16 B-trim: 46 in 1/49 Lambda= 0.163217 statistics sampled from 9470 (9475) to 9470 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.674), E-opt: 0.2 (0.291), width: 16 Scan time: 2.270 The best scores are: opt bits E(32554) CCDS9122.1 DAO gene_id:1610|Hs108|chr12 ( 347) 2415 577.1 7.5e-165 CCDS5082.1 DDO gene_id:8528|Hs108|chr6 ( 369) 852 209.0 4.9e-54 CCDS5083.1 DDO gene_id:8528|Hs108|chr6 ( 310) 469 118.8 5.9e-27 >>CCDS9122.1 DAO gene_id:1610|Hs108|chr12 (347 aa) initn: 2415 init1: 2415 opt: 2415 Z-score: 3073.1 bits: 577.1 E(32554): 7.5e-165 Smith-Waterman score: 2415; 100.0% identity (100.0% similar) in 347 aa overlap (1-347:1-347) 10 20 30 40 50 60 pF1KE4 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLTTTDVAAGLWQPYLSDPN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS91 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLTTTDVAAGLWQPYLSDPN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 NPQEADWSQQTFDYLLSHVHSPNAENLGLFLISGYNLFHEAIPDPSWKDTVLGFRKLTPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS91 NPQEADWSQQTFDYLLSHVHSPNAENLGLFLISGYNLFHEAIPDPSWKDTVLGFRKLTPR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 ELDMFPDYGYGWFHTSLILEGKNYLQWLTERLTERGVKFFQRKVESFEEVAREGADVIVN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS91 ELDMFPDYGYGWFHTSLILEGKNYLQWLTERLTERGVKFFQRKVESFEEVAREGADVIVN 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 CTGVWAGALQRDPLLQPGRGQIMKVDAPWMKHFILTHDPERGIYNSPYIIPGTQTVTLGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS91 CTGVWAGALQRDPLLQPGRGQIMKVDAPWMKHFILTHDPERGIYNSPYIIPGTQTVTLGG 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 IFQLGNWSELNNIQDHNTIWEGCCRLEPTLKNARIIGERTGFRPVRPQIRLEREQLRTGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS91 IFQLGNWSELNNIQDHNTIWEGCCRLEPTLKNARIIGERTGFRPVRPQIRLEREQLRTGP 250 260 270 280 290 300 310 320 330 340 pF1KE4 SNTEVIHNYGHGGYGLTIHWGCALEAAKLFGRILEEKKLSRMPPSHL ::::::::::::::::::::::::::::::::::::::::::::::: CCDS91 SNTEVIHNYGHGGYGLTIHWGCALEAAKLFGRILEEKKLSRMPPSHL 310 320 330 340 >>CCDS5082.1 DDO gene_id:8528|Hs108|chr6 (369 aa) initn: 716 init1: 334 opt: 852 Z-score: 1083.6 bits: 209.0 E(32554): 4.9e-54 Smith-Waterman score: 852; 39.6% identity (66.4% similar) in 351 aa overlap (2-347:33-369) 10 20 30 pF1KE4 MRVVVIGAGVIGLSTALCIHERYHSVLQP-L :..:.::::.:::::.:: : : : CCDS50 PARHWETRFGARDFGGFQDCFFRDRLMDTARIAVVGAGVVGLSTAVCI-----SKLVPRC 10 20 30 40 50 40 50 60 70 80 pF1KE4 DIKVYADRFTPLTTTDVAAGLWQPYLSDPNNP--QEADWSQQTFDYLLSHVHSPNAENLG .. . .:.::: ::.:::::. :. . :..: . .: ..::..:.. ..: .: . : CCDS50 SVTIISDKFTPDTTSDVAAGMLIPH-TYPDTPIHTQKQWFRETFNHLFAIANSAEAGDAG 60 70 80 90 100 110 90 100 110 120 130 140 pF1KE4 LFLISGYNLFHEAIPD--PSWKDTVLGFRKLTPRELDMFPDYGYGWFHTSLILEGKNYLQ . :.::...:. . . : : :.::::::.: :: ::.: .: :.: : :: CCDS50 VHLVSGWQIFQSTPTEEVPFWADVVLGFRKMTEAELKKFPQYVFGQAFTTLKCECPAYLP 120 130 140 150 160 170 150 160 170 180 190 200 pF1KE4 WLTERLTERGVKFFQRKVESFEEVAREGADVIVNCTGVWAGALQRDPLLQPGRGQIMKVD :: .:. : . :..:.. :. . . :..:::.:. . : : . : :::...:. CCDS50 WLEKRIKGSGGWTLTRRIEDLWEL-HPSFDIVVNCSGLGSRQLAGDSKIFPVRGQVLQVQ 180 190 200 210 220 230 210 220 230 240 250 260 pF1KE4 APWMKHFILTHDPERGIYNSPYIIPGTQTVTLGGIFQLGNWSELNNIQDHNTIWEGCCRL :::..::: : . :: :::. ::::: : :.:. . .. : :: : CCDS50 APWVEHFI------RDGSGLTYIYPGTSHVTLGGTRQKGDWNLSPDAENSREILSRCCAL 240 250 260 270 280 270 280 290 300 310 320 pF1KE4 EPTLKNARIIGERTGFRPVRPQIRLEREQLRTGPSNTEVIHNYGHGGYGLTIHWGCALEA ::.:..: : :..:.:: :: .::. : : . :.:.::::. :...::: :::: CCDS50 EPSLHGACNIREKVGLRPYRPGVRLQTELLARDGQRLPVVHHYGHGSGGISVHWGTALEA 290 300 310 320 330 340 330 340 pF1KE4 AKLFGRILEEKKLSRMPPSHL :.: .. .. . . .: :.: CCDS50 ARLVSECVHALR-TPIPKSNL 350 360 >>CCDS5083.1 DDO gene_id:8528|Hs108|chr6 (310 aa) initn: 600 init1: 334 opt: 469 Z-score: 597.5 bits: 118.8 E(32554): 5.9e-27 Smith-Waterman score: 588; 33.5% identity (57.0% similar) in 349 aa overlap (2-347:33-310) 10 20 30 pF1KE4 MRVVVIGAGVIGLSTALCIHERYHSVLQP-L :..:.::::.:::::.:: : : : CCDS50 PARHWETRFGARDFGGFQDCFFRDRLMDTARIAVVGAGVVGLSTAVCI-----SKLVPRC 10 20 30 40 50 40 50 60 70 80 pF1KE4 DIKVYADRFTPLTTTDVAAGLWQPYLSDPNNP--QEADWSQQTFDYLLSHVHSPNAENLG .. . .:.::: ::.:::::. :. . :..: . .: ..::..:.. ..: .: . : CCDS50 SVTIISDKFTPDTTSDVAAGMLIPH-TYPDTPIHTQKQWFRETFNHLFAIANSAEAGDAG 60 70 80 90 100 110 90 100 110 120 130 140 pF1KE4 LFLISGYNLFHEAIPDPSWKDTVLGFRKLTPRELDMFPDYGYGWFHTSLILEGKNYLQWL . :.:: . : . :: : CCDS50 VHLVSG----------------IKG---------------SGGWTLT------------- 120 130 150 160 170 180 190 200 pF1KE4 TERLTERGVKFFQRKVESFEEVAREGADVIVNCTGVWAGALQRDPLLQPGRGQIMKVDAP :..:.. :. . . :..:::.:. . : : . : :::...:.:: CCDS50 -------------RRIEDLWEL-HPSFDIVVNCSGLGSRQLAGDSKIFPVRGQVLQVQAP 140 150 160 170 210 220 230 240 250 260 pF1KE4 WMKHFILTHDPERGIYNSPYIIPGTQTVTLGGIFQLGNWSELNNIQDHNTIWEGCCRLEP :..::: : . :: :::. ::::: : :.:. . .. : :: ::: CCDS50 WVEHFI------RDGSGLTYIYPGTSHVTLGGTRQKGDWNLSPDAENSREILSRCCALEP 180 190 200 210 220 230 270 280 290 300 310 320 pF1KE4 TLKNARIIGERTGFRPVRPQIRLEREQLRTGPSNTEVIHNYGHGGYGLTIHWGCALEAAK .:..: : :..:.:: :: .::. : : . :.:.::::. :...::: :::::. CCDS50 SLHGACNIREKVGLRPYRPGVRLQTELLARDGQRLPVVHHYGHGSGGISVHWGTALEAAR 240 250 260 270 280 290 330 340 pF1KE4 LFGRILEEKKLSRMPPSHL : .. .. . . .: :.: CCDS50 LVSECVHALR-TPIPKSNL 300 310 347 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 02:13:15 2016 done: Sun Nov 6 02:13:15 2016 Total Scan time: 2.270 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]