FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6227, 219 aa 1>>>pF1KE6227 219 - 219 aa - 219 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1241+/-0.000976; mu= 14.6592+/- 0.058 mean_var=64.7444+/-13.716, 0's: 0 Z-trim(104.0): 31 B-trim: 48 in 1/47 Lambda= 0.159394 statistics sampled from 7651 (7661) to 7651 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.603), E-opt: 0.2 (0.235), width: 16 Scan time: 1.510 The best scores are: opt bits E(32554) CCDS4812.1 LHFPL5 gene_id:222662|Hs108|chr6 ( 219) 1489 351.2 3.1e-97 CCDS33691.1 LHFPL4 gene_id:375323|Hs108|chr3 ( 247) 994 237.4 6.2e-63 CCDS9369.1 LHFP gene_id:10186|Hs108|chr13 ( 200) 278 72.7 1.9e-13 CCDS4042.1 LHFPL2 gene_id:10184|Hs108|chr5 ( 228) 242 64.4 6.6e-11 >>CCDS4812.1 LHFPL5 gene_id:222662|Hs108|chr6 (219 aa) initn: 1489 init1: 1489 opt: 1489 Z-score: 1859.3 bits: 351.2 E(32554): 3.1e-97 Smith-Waterman score: 1489; 100.0% identity (100.0% similar) in 219 aa overlap (1-219:1-219) 10 20 30 40 50 60 pF1KE6 MVKLLPAQEAAKIYHTNYVRNSRAVGVMWGTLTICFSVLVMALFIQPYWIGDSVNTPQAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS48 MVKLLPAQEAAKIYHTNYVRNSRAVGVMWGTLTICFSVLVMALFIQPYWIGDSVNTPQAG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 YFGLFSYCVGNVLSSELICKGGPLDFSSIPSRAFKTAMFFVALGMFLIIGSIICFSLFFI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS48 YFGLFSYCVGNVLSSELICKGGPLDFSSIPSRAFKTAMFFVALGMFLIIGSIICFSLFFI 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 CNTATVYKICAWMQLAAATGLMIGCLVYPDGWDSSEVRRMCGEQTGKYTLGHCTIRWAFM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS48 CNTATVYKICAWMQLAAATGLMIGCLVYPDGWDSSEVRRMCGEQTGKYTLGHCTIRWAFM 130 140 150 160 170 180 190 200 210 pF1KE6 LAILSIGDALILSFLAFVLGYRQDKLLPDDYKADGTEEV ::::::::::::::::::::::::::::::::::::::: CCDS48 LAILSIGDALILSFLAFVLGYRQDKLLPDDYKADGTEEV 190 200 210 >>CCDS33691.1 LHFPL4 gene_id:375323|Hs108|chr3 (247 aa) initn: 989 init1: 649 opt: 994 Z-score: 1243.3 bits: 237.4 E(32554): 6.2e-63 Smith-Waterman score: 994; 61.8% identity (84.8% similar) in 217 aa overlap (4-219:1-217) 10 20 30 40 50 60 pF1KE6 MVKLLPAQEAAKIYHTNYVRNSRAVGVMWGTLTICFSVLVMALFIQPYWIGDSVNTPQAG .::.:::.:.:: .:.:::::.::.:. .::::... ...::::::.::::.::. : CCDS33 MLPSQEASKLYHEHYMRNSRAIGVLWAIFTICFAIINVVVFIQPYWVGDSVSTPKPG 10 20 30 40 50 70 80 90 100 110 pF1KE6 YFGLFSYCVGNVLSS-ELICKGGPLDFSSIPSRAFKTAMFFVALGMFLIIGSIICFSLFF ::::: ::::. :.. :: :.:. :::.::: :::.: ::: :.: ::.: : :::::: CCDS33 YFGLFHYCVGSGLAGRELTCRGSFTDFSTIPSSAFKAAAFFVLLSMVLILGCITCFSLFF 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 ICNTATVYKICAWMQLAAATGLMIGCLVYPDGWDSSEVRRMCGEQTGKYTLGHCTIRWAF .::::::::::::::: :: :..::...:::::. .: ::: .::::.:: :..:::. CCDS33 FCNTATVYKICAWMQLLAALCLVLGCMIFPDGWDAETIRDMCGAKTGKYSLGDCSVRWAY 120 130 140 150 160 170 180 190 200 210 pF1KE6 MLAILSIGDALILSFLAFVLGYRQDKLLPDDYKADGTEEV .:::..: .:::::::::::: :: :: .. : .. . : CCDS33 ILAIIGILNALILSFLAFVLGNRQTDLLQEELKPENKDFVGSTVSSVLRPGGDVSGWGVL 180 190 200 210 220 230 CCDS33 PCPVAHSQGP 240 >>CCDS9369.1 LHFP gene_id:10186|Hs108|chr13 (200 aa) initn: 275 init1: 182 opt: 278 Z-score: 354.8 bits: 72.7 E(32554): 1.9e-13 Smith-Waterman score: 282; 30.3% identity (60.5% similar) in 195 aa overlap (26-203:9-195) 10 20 30 40 50 pF1KE6 MVKLLPAQEAAKIYHTNYVRNSRAVGVMWGTLT-ICFSVLVMALFIQPYWI-GDSVNTPQ ::.:. :. .: .. ...:. :::. :.... : CCDS93 MASSLTCTGVIWALLSFLCAATSCVGFFM-PYWLWGSQLGKPV 10 20 30 40 60 70 80 90 100 110 pF1KE6 AGYFGLFSYCVGNVL--SSELI-----CKGGPLDFSSIPSRAFKTAMFFVALGMFLIIGS . :: : : : : ... : : .:..::: .. . ..:: :.. CCDS93 S--FGTFRRCSYPVHDESRQMMVMVEEC-GRYASFQGIPSAEWRICTIVTGLGCGLLL-- 50 60 70 80 90 120 130 140 150 160 pF1KE6 IICFSLFFICNTA-----TVYKICAWMQLAAATGLMIG--CLVYPDGWDSSEVRRMCGEQ .. .. .. : .. :: .. . .:. . ::.:: : .:: :::: :::. :: CCDS93 LVALTALMGCCVSDLISRTVGRVAGGIQFLG--GLLIGAGCALYPLGWDSEEVRQTCGYT 100 110 120 130 140 150 170 180 190 200 210 pF1KE6 TGKYTLGHCTIRWAFMLAILSIGDALIL-SFLAFVLGYRQDKLLPDDYKADGTEEV .:.. ::.: : ::.. . . :..: ..:: : .: CCDS93 SGQFDLGKCEIGWAYYCTGAGATAAMLLCTWLACFSGKKQKHYPY 160 170 180 190 200 >>CCDS4042.1 LHFPL2 gene_id:10184|Hs108|chr5 (228 aa) initn: 147 init1: 130 opt: 242 Z-score: 309.2 bits: 64.4 E(32554): 6.6e-11 Smith-Waterman score: 242; 24.5% identity (56.5% similar) in 184 aa overlap (45-218:44-220) 20 30 40 50 60 70 pF1KE6 HTNYVRNSRAVGVMWGTLTICFSVLVMALFIQPYWIGDSVNTPQAGYFGLFSYCVGNV-- ..: : . : .:... :. : CCDS40 TLLSIVVAFAELIAFMSADWLIGKARSRGGVEPAGPGGGSPEPYHPTLGIYARCIRNPGV 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 --LSSELICKGGPL--DFSSIPSRAFKTAMFFVALGMFLIIGSIICFSLFFICNTA---- .. . .: :: .:. : : .... .:.:.:.: :. . :.: .: . CCDS40 QHFQRDTLC--GPYAESFGEIASGFWQATAIFLAVGIF-ILCMVALVSVFTMCVQSIMKK 80 90 100 110 120 130 130 140 150 160 170 180 pF1KE6 TVYKICAWMQLAAATGLMIGCLVYPDGWDSSEVRRMCGEQTGKYTLGHCTIRWAFMLAIL .....:. .: :. :..: ..:: :: ... .::. .. : : :.. :::. :: CCDS40 SIFNVCGLLQGIAGLFLILGLILYPAGWGCQKAIDYCGHYASAYKPGDCSLGWAFYTAI- 140 150 160 170 180 190 200 210 pF1KE6 SIGDALILSFLAFVLGYRQDKLLPDDYKADGTEEV . .:.:. :.. . . .: . :: CCDS40 ---GGTVLTFICAVFSAQAEIATSSDKVQEEIEEGKNLICLL 190 200 210 220 219 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 11:15:56 2016 done: Tue Nov 8 11:15:57 2016 Total Scan time: 1.510 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]