FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3647, 99 aa 1>>>pF1KE3647 99 - 99 aa - 99 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1091+/-0.000308; mu= 10.0958+/- 0.019 mean_var=58.1434+/-11.630, 0's: 0 Z-trim(116.3): 2 B-trim: 116 in 2/56 Lambda= 0.168199 statistics sampled from 27306 (27308) to 27306 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.721), E-opt: 0.2 (0.32), width: 16 Scan time: 3.780 The best scores are: opt bits E(85289) NP_000031 (OMIM: 107720,614028) apolipoprotein C-I ( 99) 630 160.5 4.1e-40 >>NP_000031 (OMIM: 107720,614028) apolipoprotein C-III p (99 aa) initn: 630 init1: 630 opt: 630 Z-score: 841.1 bits: 160.5 E(85289): 4.1e-40 Smith-Waterman score: 630; 100.0% identity (100.0% similar) in 99 aa overlap (1-99:1-99) 10 20 30 40 50 60 pF1KE3 MQPRVLLVVALLALLASARASEAEDASLLSFMQGYMKHATKTAKDALSSVQESQVAQQAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 MQPRVLLVVALLALLASARASEAEDASLLSFMQGYMKHATKTAKDALSSVQESQVAQQAR 10 20 30 40 50 60 70 80 90 pF1KE3 GWVTDGFSSLKDYWSTVKDKFSEFWDLDPEVRPTSAVAA ::::::::::::::::::::::::::::::::::::::: NP_000 GWVTDGFSSLKDYWSTVKDKFSEFWDLDPEVRPTSAVAA 70 80 90 99 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 00:21:54 2016 done: Mon Nov 7 00:21:55 2016 Total Scan time: 3.780 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]