FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3647, 99 aa 1>>>pF1KE3647 99 - 99 aa - 99 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3001+/-0.000624; mu= 8.8609+/- 0.037 mean_var=56.7273+/-11.292, 0's: 0 Z-trim(109.7): 5 B-trim: 0 in 0/55 Lambda= 0.170286 statistics sampled from 11094 (11097) to 11094 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.736), E-opt: 0.2 (0.341), width: 16 Scan time: 1.560 The best scores are: opt bits E(32554) CCDS8377.1 APOC3 gene_id:345|Hs108|chr11 ( 99) 630 162.3 4.6e-41 >>CCDS8377.1 APOC3 gene_id:345|Hs108|chr11 (99 aa) initn: 630 init1: 630 opt: 630 Z-score: 850.7 bits: 162.3 E(32554): 4.6e-41 Smith-Waterman score: 630; 100.0% identity (100.0% similar) in 99 aa overlap (1-99:1-99) 10 20 30 40 50 60 pF1KE3 MQPRVLLVVALLALLASARASEAEDASLLSFMQGYMKHATKTAKDALSSVQESQVAQQAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS83 MQPRVLLVVALLALLASARASEAEDASLLSFMQGYMKHATKTAKDALSSVQESQVAQQAR 10 20 30 40 50 60 70 80 90 pF1KE3 GWVTDGFSSLKDYWSTVKDKFSEFWDLDPEVRPTSAVAA ::::::::::::::::::::::::::::::::::::::: CCDS83 GWVTDGFSSLKDYWSTVKDKFSEFWDLDPEVRPTSAVAA 70 80 90 99 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 00:21:53 2016 done: Mon Nov 7 00:21:54 2016 Total Scan time: 1.560 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]