FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3659, 175 aa 1>>>pF1KE3659 175 - 175 aa - 175 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9386+/-0.0006; mu= 15.1898+/- 0.036 mean_var=69.5410+/-13.923, 0's: 0 Z-trim(112.7): 6 B-trim: 0 in 0/53 Lambda= 0.153799 statistics sampled from 13439 (13444) to 13439 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.779), E-opt: 0.2 (0.413), width: 16 Scan time: 1.690 The best scores are: opt bits E(32554) CCDS11437.1 RAMP2 gene_id:10266|Hs108|chr17 ( 175) 1214 277.3 3.2e-75 CCDS77546.1 RAMP1 gene_id:10267|Hs108|chr2 ( 126) 248 62.9 8.4e-11 CCDS5503.1 RAMP3 gene_id:10268|Hs108|chr7 ( 148) 248 63.0 9.5e-11 CCDS2522.1 RAMP1 gene_id:10267|Hs108|chr2 ( 148) 248 63.0 9.5e-11 >>CCDS11437.1 RAMP2 gene_id:10266|Hs108|chr17 (175 aa) initn: 1214 init1: 1214 opt: 1214 Z-score: 1463.9 bits: 277.3 E(32554): 3.2e-75 Smith-Waterman score: 1214; 100.0% identity (100.0% similar) in 175 aa overlap (1-175:1-175) 10 20 30 40 50 60 pF1KE3 MASLRVERAGGPRLPRTRVGRPAALRLLLLLGAVLNPHEALAQPLPTTGTPGSEGGTVKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MASLRVERAGGPRLPRTRVGRPAALRLLLLLGAVLNPHEALAQPLPTTGTPGSEGGTVKN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 YETAVQFCWNHYKDQMDPIEKDWCDWAMISRPYSTLRDCLEHFAELFDLGFPNPLAERII :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 YETAVQFCWNHYKDQMDPIEKDWCDWAMISRPYSTLRDCLEHFAELFDLGFPNPLAERII 70 80 90 100 110 120 130 140 150 160 170 pF1KE3 FETHQIHFANCSLVQPTFSDPPEDVLLAMIIAPICLIPFLITLVVWRSKDSEAQA ::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 FETHQIHFANCSLVQPTFSDPPEDVLLAMIIAPICLIPFLITLVVWRSKDSEAQA 130 140 150 160 170 >>CCDS77546.1 RAMP1 gene_id:10267|Hs108|chr2 (126 aa) initn: 256 init1: 230 opt: 248 Z-score: 307.4 bits: 62.9 E(32554): 8.4e-11 Smith-Waterman score: 248; 32.4% identity (63.9% similar) in 108 aa overlap (66-172:16-123) 40 50 60 70 80 90 pF1KE3 NPHEALAQPLPTTGTPGSEGGTVKNYETAVQFCWNHYKDQMDPI-EKDWCDWAMISRPYS ..: .... .:. . : ::::. : : CCDS77 MTTACQEANYGALLRELCLTQFQVDMEAVGETLWCDWGRTIRSYR 10 20 30 40 100 110 120 130 140 150 pF1KE3 TLRDCLEHFAELFDLGFPNPLAERIIFETHQIHFANCSLVQPTFSDPPEDVLLAMIIAPI : :: :.:: . .:: ..:... .: .: .: . . ::: ..: .:..:: CCDS77 ELADCTWHMAEKLGCFWPNAEVDRFFLAVHGRYFRSCPISGRAVRDPPGSILYPFIVVPI 50 60 70 80 90 100 160 170 pF1KE3 CLIPFLITLVVWRSKDSEAQA . .. .::::.:: .: CCDS77 TVTLLVTALVVWQSKRTEGIV 110 120 >>CCDS5503.1 RAMP3 gene_id:10268|Hs108|chr7 (148 aa) initn: 285 init1: 224 opt: 248 Z-score: 306.5 bits: 63.0 E(32554): 9.5e-11 Smith-Waterman score: 248; 28.9% identity (56.3% similar) in 142 aa overlap (32-172:4-145) 10 20 30 40 50 60 pF1KE3 ASLRVERAGGPRLPRTRVGRPAALRLLLLLGAVLNPHEALAQPLPTTGTPGSEGGTVKNY ::. :. : : : . : . .. CCDS55 METGALRRPQLLPLLLLLCGGCPRAGGCNETGM 10 20 30 70 80 90 100 110 120 pF1KE3 ETAVQFCWNHYKDQMDPIEK-DWCDWAMISRPYSTLRDCLEHFAELFDLGFPNPLAERII . .: . . :.: .. ::. . . : .. .: : :.. .:::::. .: CCDS55 LERLPLCGKAFADMMGKVDVWKWCNLSEFIVYYESFTNCTEMEANVVGCYWPNPLAQGFI 40 50 60 70 80 90 130 140 150 160 170 pF1KE3 FETHQIHFANCSLVQPTFSDPPEDVLLAMIIAPICLIPFLITLVVWRSKDSEAQA :. :.::.. . . :::..::. .:. :. : . ::::::: .. CCDS55 TGIHRQFFSNCTVDRVHLEDPPDEVLIPLIVIPVVLTVAMAGLVVWRSKRTDTLL 100 110 120 130 140 >>CCDS2522.1 RAMP1 gene_id:10267|Hs108|chr2 (148 aa) initn: 259 init1: 230 opt: 248 Z-score: 306.5 bits: 63.0 E(32554): 9.5e-11 Smith-Waterman score: 248; 32.4% identity (63.9% similar) in 108 aa overlap (66-172:38-145) 40 50 60 70 80 90 pF1KE3 NPHEALAQPLPTTGTPGSEGGTVKNYETAVQFCWNHYKDQMDPI-EKDWCDWAMISRPYS ..: .... .:. . : ::::. : : CCDS25 LPRRGLWLLLAHHLFMTTACQEANYGALLRELCLTQFQVDMEAVGETLWCDWGRTIRSYR 10 20 30 40 50 60 100 110 120 130 140 150 pF1KE3 TLRDCLEHFAELFDLGFPNPLAERIIFETHQIHFANCSLVQPTFSDPPEDVLLAMIIAPI : :: :.:: . .:: ..:... .: .: .: . . ::: ..: .:..:: CCDS25 ELADCTWHMAEKLGCFWPNAEVDRFFLAVHGRYFRSCPISGRAVRDPPGSILYPFIVVPI 70 80 90 100 110 120 160 170 pF1KE3 CLIPFLITLVVWRSKDSEAQA . .. .::::.:: .: CCDS25 TVTLLVTALVVWQSKRTEGIV 130 140 175 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 00:23:00 2016 done: Mon Nov 7 00:23:00 2016 Total Scan time: 1.690 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]