FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4542, 626 aa 1>>>pF1KE4542 626 - 626 aa - 626 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 13.4402+/-0.00113; mu= -20.4912+/- 0.067 mean_var=404.2633+/-82.886, 0's: 0 Z-trim(112.7): 100 B-trim: 58 in 1/53 Lambda= 0.063788 statistics sampled from 13351 (13421) to 13351 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.741), E-opt: 0.2 (0.412), width: 16 Scan time: 4.380 The best scores are: opt bits E(32554) CCDS54068.1 GP1BA gene_id:2811|Hs108|chr17 ( 652) 2929 284.2 3.8e-76 >>CCDS54068.1 GP1BA gene_id:2811|Hs108|chr17 (652 aa) initn: 2890 init1: 2890 opt: 2929 Z-score: 1480.5 bits: 284.2 E(32554): 3.8e-76 Smith-Waterman score: 4136; 95.9% identity (96.0% similar) in 652 aa overlap (1-626:1-652) 10 20 30 40 50 60 pF1KE4 MPLLLLLLLLPSPLHPHPICEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 MPLLLLLLLLPSPLHPHPICEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLY 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 TFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 TFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 LDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 LDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 AGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 AGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 ENVYVWKQGVDVKAMTSNVASVQCDNSDKFPVYKYPGKGCPTLGDEGDTDLYDYYPEEDT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 ENVYVWKQGVDVKAMTSNVASVQCDNSDKFPVYKYPGKGCPTLGDEGDTDLYDYYPEEDT 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE4 EGDKVRATRTVVKFPTKAHTTPWGLFYSWSTASLDSQMPSSLHPTQESTKEQTTFPPRWT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 EGDKVRATRTVVKFPTKAHTTPWGLFYSWSTASLDSQMPSSLHPTQESTKEQTTFPPRWT 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE4 PNFTLHMESITFSKTPKSTTEPTPSPTTSEPVPEPAPNMTTLEPTPSPTTPEPTSEPAPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 PNFTLHMESITFSKTPKSTTEPTPSPTTSEPVPEPAPNMTTLEPTPSPTTPEPTSEPAPS 370 380 390 400 410 420 430 440 450 pF1KE4 PTTPEPT--------------------------PIPTIATSPTILVSATSLITPKSTFLT ::::::: ::::::::::::::::::::::::::: CCDS54 PTTPEPTSEPAPSPTTPEPTSEPAPSPTTPEPTPIPTIATSPTILVSATSLITPKSTFLT 430 440 450 460 470 480 460 470 480 490 500 510 pF1KE4 TTKPVSLLESTKKTIPELDQPPKLRGVLQGHLESSRNDPFLHPDFCCLLPLGFYVLGLFW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 TTKPVSLLESTKKTIPELDQPPKLRGVLQGHLESSRNDPFLHPDFCCLLPLGFYVLGLFW 490 500 510 520 530 540 520 530 540 550 560 570 pF1KE4 LLFASVVLILLLSWVGHVKPQALDSGQGAALTTATQTTHLELQRGRQVTVPRAWLLFLRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 LLFASVVLILLLSWVGHVKPQALDSGQGAALTTATQTTHLELQRGRQVTVPRAWLLFLRG 550 560 570 580 590 600 580 590 600 610 620 pF1KE4 SLPTFRSSLFLWVRPNGRLGPLVAGRRPSALSQGRGQDLLSTVSIRYSGHSL ::::::::::::::::::.::::::::::::::::::::::::::::::::: CCDS54 SLPTFRSSLFLWVRPNGRVGPLVAGRRPSALSQGRGQDLLSTVSIRYSGHSL 610 620 630 640 650 626 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 00:07:09 2016 done: Sun Nov 6 00:07:10 2016 Total Scan time: 4.380 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]