FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4313, 322 aa 1>>>pF1KE4313 322 - 322 aa - 322 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.6856+/-0.000313; mu= 9.9299+/- 0.020 mean_var=86.6075+/-17.120, 0's: 0 Z-trim(117.7): 67 B-trim: 0 in 0/53 Lambda= 0.137815 statistics sampled from 29817 (29884) to 29817 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.7), E-opt: 0.2 (0.35), width: 16 Scan time: 7.780 The best scores are: opt bits E(85289) NP_006682 (OMIM: 605702) lymphatic vessel endothel ( 322) 2071 421.1 1.5e-117 NP_001189486 (OMIM: 107269,609027) CD44 antigen is ( 294) 270 63.0 8.6e-10 NP_001189485 (OMIM: 107269,609027) CD44 antigen is ( 340) 270 63.0 9.8e-10 NP_001001391 (OMIM: 107269,609027) CD44 antigen is ( 361) 270 63.1 1e-09 NP_001189484 (OMIM: 107269,609027) CD44 antigen is ( 429) 271 63.3 1.1e-09 XP_006718453 (OMIM: 107269,609027) PREDICTED: CD44 ( 397) 270 63.1 1.1e-09 XP_011518791 (OMIM: 107269,609027) PREDICTED: CD44 ( 402) 270 63.1 1.1e-09 XP_016874074 (OMIM: 107269,609027) PREDICTED: CD44 ( 403) 270 63.1 1.1e-09 XP_011518790 (OMIM: 107269,609027) PREDICTED: CD44 ( 425) 270 63.1 1.2e-09 XP_016874073 (OMIM: 107269,609027) PREDICTED: CD44 ( 446) 270 63.1 1.3e-09 XP_011518789 (OMIM: 107269,609027) PREDICTED: CD44 ( 446) 270 63.1 1.3e-09 NP_001001390 (OMIM: 107269,609027) CD44 antigen is ( 493) 270 63.1 1.4e-09 XP_005253297 (OMIM: 107269,609027) PREDICTED: CD44 ( 535) 270 63.1 1.5e-09 XP_011518788 (OMIM: 107269,609027) PREDICTED: CD44 ( 537) 270 63.1 1.5e-09 XP_005253296 (OMIM: 107269,609027) PREDICTED: CD44 ( 578) 270 63.1 1.6e-09 XP_005253295 (OMIM: 107269,609027) PREDICTED: CD44 ( 580) 270 63.1 1.6e-09 XP_011518787 (OMIM: 107269,609027) PREDICTED: CD44 ( 656) 270 63.1 1.8e-09 XP_011518786 (OMIM: 107269,609027) PREDICTED: CD44 ( 657) 270 63.1 1.8e-09 XP_011518785 (OMIM: 107269,609027) PREDICTED: CD44 ( 658) 270 63.1 1.8e-09 XP_011518784 (OMIM: 107269,609027) PREDICTED: CD44 ( 675) 270 63.1 1.8e-09 NP_001001389 (OMIM: 107269,609027) CD44 antigen is ( 699) 270 63.1 1.9e-09 XP_016874072 (OMIM: 107269,609027) PREDICTED: CD44 ( 699) 270 63.1 1.9e-09 XP_005253292 (OMIM: 107269,609027) PREDICTED: CD44 ( 700) 270 63.1 1.9e-09 XP_005253291 (OMIM: 107269,609027) PREDICTED: CD44 ( 702) 270 63.1 1.9e-09 XP_005253290 (OMIM: 107269,609027) PREDICTED: CD44 ( 703) 270 63.1 1.9e-09 XP_006718451 (OMIM: 107269,609027) PREDICTED: CD44 ( 741) 270 63.1 2e-09 XP_005253289 (OMIM: 107269,609027) PREDICTED: CD44 ( 742) 270 63.1 2e-09 NP_000601 (OMIM: 107269,609027) CD44 antigen isofo ( 742) 270 63.1 2e-09 XP_005253288 (OMIM: 107269,609027) PREDICTED: CD44 ( 743) 270 63.1 2e-09 NP_009046 (OMIM: 600410) tumor necrosis factor-ind ( 277) 196 48.3 2.2e-05 XP_016861492 (OMIM: 608560) PREDICTED: stabilin-1 (2555) 171 43.6 0.0053 XP_016861491 (OMIM: 608560) PREDICTED: stabilin-1 (2565) 171 43.6 0.0053 XP_005265031 (OMIM: 608560) PREDICTED: stabilin-1 (2569) 171 43.6 0.0053 NP_055951 (OMIM: 608560) stabilin-1 precursor [Hom (2570) 171 43.6 0.0053 XP_016861490 (OMIM: 608560) PREDICTED: stabilin-1 (2583) 171 43.6 0.0053 XP_016861489 (OMIM: 608560) PREDICTED: stabilin-1 (2589) 171 43.6 0.0054 XP_016861488 (OMIM: 608560) PREDICTED: stabilin-1 (2590) 171 43.6 0.0054 XP_005265030 (OMIM: 608560) PREDICTED: stabilin-1 (2595) 171 43.6 0.0054 XP_016861487 (OMIM: 608560) PREDICTED: stabilin-1 (2615) 171 43.6 0.0054 >>NP_006682 (OMIM: 605702) lymphatic vessel endothelial (322 aa) initn: 2071 init1: 2071 opt: 2071 Z-score: 2231.4 bits: 421.1 E(85289): 1.5e-117 Smith-Waterman score: 2071; 99.7% identity (99.7% similar) in 322 aa overlap (1-322:1-322) 10 20 30 40 50 60 pF1KE4 MARCFSLVLLLTSIWTTRLLVQGSLRAEELSIQVSCRIMGITLVSKKANQQLNFTEAKEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 MARCFSLVLLLTSIWTTRLLVQGSLRAEELSIQVSCRIMGITLVSKKANQQLNFTEAKEA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 CRLLGLSLAGKDQVETALKASFETCSYGWVGDGFVVISRISPNPKCGKNGVGVLIRKVPV ::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::: NP_006 CRLLGLSLAGKDQVETALKASFETCSYGWVGDGFVVISRISPNPKCGKNGVGVLIWKVPV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 SRQFAAYCYNSSDTWTNSCIPEIITTKDPIFNTQTATQTTEFIVSDSTYSVASPYSTIPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 SRQFAAYCYNSSDTWTNSCIPEIITTKDPIFNTQTATQTTEFIVSDSTYSVASPYSTIPA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 PTTTPPAPASTSIPRRKKLICVTEVFMETSTMSTETEPFVENKAAFKNEAAGFGGVPTAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 PTTTPPAPASTSIPRRKKLICVTEVFMETSTMSTETEPFVENKAAFKNEAAGFGGVPTAL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 LVLALLFFGAAAGLGFCYVKRYVKAFPFTNKNQQKEMIETKVVKEEKANDSNPNEESKKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 LVLALLFFGAAAGLGFCYVKRYVKAFPFTNKNQQKEMIETKVVKEEKANDSNPNEESKKT 250 260 270 280 290 300 310 320 pF1KE4 DKNPEESKSPSKTTVRCLEAEV :::::::::::::::::::::: NP_006 DKNPEESKSPSKTTVRCLEAEV 310 320 >>NP_001189486 (OMIM: 107269,609027) CD44 antigen isofor (294 aa) initn: 210 init1: 150 opt: 270 Z-score: 296.8 bits: 63.0 E(85289): 8.6e-10 Smith-Waterman score: 270; 28.2% identity (58.4% similar) in 202 aa overlap (25-222:17-214) 10 20 30 40 50 60 pF1KE4 MARCFSLVLLLTSIWTTRLLVQGSLRAEELSIQVSCRIMGITLVSKKANQQLNFTEAKEA : .......::. :. : :.. ... ::: . NP_001 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADL 10 20 30 40 50 70 80 90 100 110 120 pF1KE4 CRLLGLSLAGKDQVETALKASFETCSYGWVGDGFVVISRISPNPKCGKNGVGVLIRKVPV :. .. .: :.: ::. .:::: ::.. .: ::: :: :: :. :..:: : . NP_001 CKAFNSTLPTMAQMEKALSIGFETCRYGFI-EGHVVIPRIHPNSICAANNTGVYILTSNT 60 70 80 90 100 110 130 140 150 160 170 pF1KE4 SRQFAAYCYNSSDTWTNSC--IPEIITTKD-PIFNTQTATQTTEFIVSDSTYSVASPYST : :. .::.:.: ..: . .. .. : :: : . . :.. :. . : . .: . NP_001 S-QYDTYCFNASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRY-VQKGEYRT-NPEDI 120 130 140 150 160 180 190 200 210 220 230 pF1KE4 IPA-PTTTPPAPASTSIPRRKKLICVTEVFMETSTMSTETEPFVENKAAFKNEAAGFGGV :. :: . .:.: . . .: . . : :.. . NP_001 YPSNPTDDDVSSGSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATRDQDTF 170 180 190 200 210 220 240 250 260 270 280 290 pF1KE4 PTALLVLALLFFGAAAGLGFCYVKRYVKAFPFTNKNQQKEMIETKVVKEEKANDSNPNEE NP_001 HPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLALALILAVCIA 230 240 250 260 270 280 >>NP_001189485 (OMIM: 107269,609027) CD44 antigen isofor (340 aa) initn: 210 init1: 150 opt: 270 Z-score: 295.8 bits: 63.0 E(85289): 9.8e-10 Smith-Waterman score: 273; 25.3% identity (55.4% similar) in 316 aa overlap (25-312:17-321) 10 20 30 40 50 60 pF1KE4 MARCFSLVLLLTSIWTTRLLVQGSLRAEELSIQVSCRIMGITLVSKKANQQLNFTEAKEA : .......::. :. : :.. ... ::: . NP_001 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADL 10 20 30 40 50 70 80 90 100 110 120 pF1KE4 CRLLGLSLAGKDQVETALKASFETCSYGWVGDGFVVISRISPNPKCGKNGVGVLIRKVPV :. .. .: :.: ::. .:::: ::.. .: ::: :: :: :. :..:: : . NP_001 CKAFNSTLPTMAQMEKALSIGFETCRYGFI-EGHVVIPRIHPNSICAANNTGVYILTSNT 60 70 80 90 100 110 130 140 150 160 170 pF1KE4 SRQFAAYCYNSSDTWTNSC--IPEIITTKD-PIFNTQTATQTTEFIVSDSTYSVASPYST : :. .::.:.: ..: . .. .. : :: : . . :.. :. . : . .: . NP_001 S-QYDTYCFNASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRY-VQKGEYRT-NPEDI 120 130 140 150 160 180 190 200 210 220 230 pF1KE4 IPA-PTTTPPAPASTSIPRRKKLICVTEVFMETSTMSTETEPFVENK-----AAFKNEAA :. :: . .:.: . . .: . . : :.. .. :. ..... NP_001 YPSNPTDDDVSSGSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATRHSHGS 170 180 190 200 210 220 240 250 260 270 pF1KE4 GFGG------------VPTALLVLALLFFGAAAGLGFCYVKRYVKAFPFTNKNQQKEMIE :: .: :..:: :. . : :. : . . .:.:... NP_001 QEGGANTTSGPIRTPQIPEWLIILASLL-ALALILAVC-----IAVNSRRRCGQKKKLVI 230 240 250 260 270 280 280 290 300 310 320 pF1KE4 TK---VVKEEKANDSNPNEESKKTDK----NPEESKSPSKTTVRCLEAEV .. .:...: . : .: ::. . : : :..:.. NP_001 NSGNGAVEDRKPSGLN-GEASKSQEMVHLVNKESSETPDQFMTADETRNLQNVDMKIGV 290 300 310 320 330 340 >>NP_001001391 (OMIM: 107269,609027) CD44 antigen isofor (361 aa) initn: 210 init1: 150 opt: 270 Z-score: 295.3 bits: 63.1 E(85289): 1e-09 Smith-Waterman score: 270; 28.2% identity (58.4% similar) in 202 aa overlap (25-222:17-214) 10 20 30 40 50 60 pF1KE4 MARCFSLVLLLTSIWTTRLLVQGSLRAEELSIQVSCRIMGITLVSKKANQQLNFTEAKEA : .......::. :. : :.. ... ::: . NP_001 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADL 10 20 30 40 50 70 80 90 100 110 120 pF1KE4 CRLLGLSLAGKDQVETALKASFETCSYGWVGDGFVVISRISPNPKCGKNGVGVLIRKVPV :. .. .: :.: ::. .:::: ::.. .: ::: :: :: :. :..:: : . NP_001 CKAFNSTLPTMAQMEKALSIGFETCRYGFI-EGHVVIPRIHPNSICAANNTGVYILTSNT 60 70 80 90 100 110 130 140 150 160 170 pF1KE4 SRQFAAYCYNSSDTWTNSC--IPEIITTKD-PIFNTQTATQTTEFIVSDSTYSVASPYST : :. .::.:.: ..: . .. .. : :: : . . :.. :. . : . .: . NP_001 S-QYDTYCFNASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRY-VQKGEYRT-NPEDI 120 130 140 150 160 180 190 200 210 220 230 pF1KE4 IPA-PTTTPPAPASTSIPRRKKLICVTEVFMETSTMSTETEPFVENKAAFKNEAAGFGGV :. :: . .:.: . . .: . . : :.. . NP_001 YPSNPTDDDVSSGSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATRDQDTF 170 180 190 200 210 220 240 250 260 270 280 290 pF1KE4 PTALLVLALLFFGAAAGLGFCYVKRYVKAFPFTNKNQQKEMIETKVVKEEKANDSNPNEE NP_001 HPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLALALILAVCIA 230 240 250 260 270 280 >>NP_001189484 (OMIM: 107269,609027) CD44 antigen isofor (429 aa) initn: 210 init1: 150 opt: 271 Z-score: 295.2 bits: 63.3 E(85289): 1.1e-09 Smith-Waterman score: 271; 27.6% identity (58.5% similar) in 217 aa overlap (25-232:17-229) 10 20 30 40 50 60 pF1KE4 MARCFSLVLLLTSIWTTRLLVQGSLRAEELSIQVSCRIMGITLVSKKANQQLNFTEAKEA : .......::. :. : :.. ... ::: . NP_001 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADL 10 20 30 40 50 70 80 90 100 110 120 pF1KE4 CRLLGLSLAGKDQVETALKASFETCSYGWVGDGFVVISRISPNPKCGKNGVGVLIRKVPV :. .. .: :.: ::. .:::: ::.. .: ::: :: :: :. :..:: : . NP_001 CKAFNSTLPTMAQMEKALSIGFETCRYGFI-EGHVVIPRIHPNSICAANNTGVYILTSNT 60 70 80 90 100 110 130 140 150 160 170 pF1KE4 SRQFAAYCYNSSDTWTNSC--IPEIITTKD-PIFNTQTATQTTEFIVSDSTYSVASPYST : :. .::.:.: ..: . .. .. : :: : . . :.. :. . : . .: . NP_001 S-QYDTYCFNASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRY-VQKGEYRT-NPEDI 120 130 140 150 160 180 190 200 210 220 230 pF1KE4 IPA-PTTTPPAPASTSIPRRKKLICVTEVFMETSTMSTETEPFVENK-----AAFKNEAA :. :: . .:.: . . .: . . : :.. .. :. .:... NP_001 YPSNPTDDDVSSGSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATNRNDVT 170 180 190 200 210 220 240 250 260 270 280 290 pF1KE4 GFGGVPTALLVLALLFFGAAAGLGFCYVKRYVKAFPFTNKNQQKEMIETKVVKEEKANDS : NP_001 GGRRDPNHSEGSTTLLEGYTSHYPHTKESRTFIPVTSAKTGSFGVTAVTVGDSNSNVNRS 230 240 250 260 270 280 >>XP_006718453 (OMIM: 107269,609027) PREDICTED: CD44 ant (397 aa) initn: 233 init1: 150 opt: 270 Z-score: 294.6 bits: 63.1 E(85289): 1.1e-09 Smith-Waterman score: 270; 28.2% identity (58.4% similar) in 202 aa overlap (25-222:17-214) 10 20 30 40 50 60 pF1KE4 MARCFSLVLLLTSIWTTRLLVQGSLRAEELSIQVSCRIMGITLVSKKANQQLNFTEAKEA : .......::. :. : :.. ... ::: . XP_006 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADL 10 20 30 40 50 70 80 90 100 110 120 pF1KE4 CRLLGLSLAGKDQVETALKASFETCSYGWVGDGFVVISRISPNPKCGKNGVGVLIRKVPV :. .. .: :.: ::. .:::: ::.. .: ::: :: :: :. :..:: : . XP_006 CKAFNSTLPTMAQMEKALSIGFETCRYGFI-EGHVVIPRIHPNSICAANNTGVYILTSNT 60 70 80 90 100 110 130 140 150 160 170 pF1KE4 SRQFAAYCYNSSDTWTNSC--IPEIITTKD-PIFNTQTATQTTEFIVSDSTYSVASPYST : :. .::.:.: ..: . .. .. : :: : . . :.. :. . : . .: . XP_006 S-QYDTYCFNASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRY-VQKGEYRT-NPEDI 120 130 140 150 160 180 190 200 210 220 230 pF1KE4 IPA-PTTTPPAPASTSIPRRKKLICVTEVFMETSTMSTETEPFVENKAAFKNEAAGFGGV :. :: . .:.: . . .: . . : :.. . XP_006 YPSNPTDDDVSSGSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATTLMSTS 170 180 190 200 210 220 240 250 260 270 280 290 pF1KE4 PTALLVLALLFFGAAAGLGFCYVKRYVKAFPFTNKNQQKEMIETKVVKEEKANDSNPNEE XP_006 ATATETATKRQETWDWFSWLFLPSESKNHLHTTTQMAGTSSNTISAGWEPNEENEDERDR 230 240 250 260 270 280 >>XP_011518791 (OMIM: 107269,609027) PREDICTED: CD44 ant (402 aa) initn: 231 init1: 150 opt: 270 Z-score: 294.6 bits: 63.1 E(85289): 1.1e-09 Smith-Waterman score: 270; 28.2% identity (58.4% similar) in 202 aa overlap (25-222:17-214) 10 20 30 40 50 60 pF1KE4 MARCFSLVLLLTSIWTTRLLVQGSLRAEELSIQVSCRIMGITLVSKKANQQLNFTEAKEA : .......::. :. : :.. ... ::: . XP_011 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADL 10 20 30 40 50 70 80 90 100 110 120 pF1KE4 CRLLGLSLAGKDQVETALKASFETCSYGWVGDGFVVISRISPNPKCGKNGVGVLIRKVPV :. .. .: :.: ::. .:::: ::.. .: ::: :: :: :. :..:: : . XP_011 CKAFNSTLPTMAQMEKALSIGFETCRYGFI-EGHVVIPRIHPNSICAANNTGVYILTSNT 60 70 80 90 100 110 130 140 150 160 170 pF1KE4 SRQFAAYCYNSSDTWTNSC--IPEIITTKD-PIFNTQTATQTTEFIVSDSTYSVASPYST : :. .::.:.: ..: . .. .. : :: : . . :.. :. . : . .: . XP_011 S-QYDTYCFNASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRY-VQKGEYRT-NPEDI 120 130 140 150 160 180 190 200 210 220 230 pF1KE4 IPA-PTTTPPAPASTSIPRRKKLICVTEVFMETSTMSTETEPFVENKAAFKNEAAGFGGV :. :: . .:.: . . .: . . : :.. . XP_011 YPSNPTDDDVSSGSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATSTSSNT 170 180 190 200 210 220 240 250 260 270 280 290 pF1KE4 PTALLVLALLFFGAAAGLGFCYVKRYVKAFPFTNKNQQKEMIETKVVKEEKANDSNPNEE XP_011 ISAGWEPNEENEDERDRHLSFSGSGIDDDEDFISSTISTTPRAFDHTKQNQDWTQWNPSH 230 240 250 260 270 280 >>XP_016874074 (OMIM: 107269,609027) PREDICTED: CD44 ant (403 aa) initn: 210 init1: 150 opt: 270 Z-score: 294.5 bits: 63.1 E(85289): 1.1e-09 Smith-Waterman score: 270; 28.2% identity (58.4% similar) in 202 aa overlap (25-222:17-214) 10 20 30 40 50 60 pF1KE4 MARCFSLVLLLTSIWTTRLLVQGSLRAEELSIQVSCRIMGITLVSKKANQQLNFTEAKEA : .......::. :. : :.. ... ::: . XP_016 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADL 10 20 30 40 50 70 80 90 100 110 120 pF1KE4 CRLLGLSLAGKDQVETALKASFETCSYGWVGDGFVVISRISPNPKCGKNGVGVLIRKVPV :. .. .: :.: ::. .:::: ::.. .: ::: :: :: :. :..:: : . XP_016 CKAFNSTLPTMAQMEKALSIGFETCRYGFI-EGHVVIPRIHPNSICAANNTGVYILTSNT 60 70 80 90 100 110 130 140 150 160 170 pF1KE4 SRQFAAYCYNSSDTWTNSC--IPEIITTKD-PIFNTQTATQTTEFIVSDSTYSVASPYST : :. .::.:.: ..: . .. .. : :: : . . :.. :. . : . .: . XP_016 S-QYDTYCFNASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRY-VQKGEYRT-NPEDI 120 130 140 150 160 180 190 200 210 220 230 pF1KE4 IPA-PTTTPPAPASTSIPRRKKLICVTEVFMETSTMSTETEPFVENKAAFKNEAAGFGGV :. :: . .:.: . . .: . . : :.. . XP_016 YPSNPTDDDVSSGSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATSTSSNT 170 180 190 200 210 220 240 250 260 270 280 290 pF1KE4 PTALLVLALLFFGAAAGLGFCYVKRYVKAFPFTNKNQQKEMIETKVVKEEKANDSNPNEE XP_016 ISAGWEPNEENEDERDRHLSFSGSGIDDDEDFISSTRDQDTFHPSGGSHTTHGSESDGHS 230 240 250 260 270 280 >>XP_011518790 (OMIM: 107269,609027) PREDICTED: CD44 ant (425 aa) initn: 210 init1: 150 opt: 270 Z-score: 294.2 bits: 63.1 E(85289): 1.2e-09 Smith-Waterman score: 270; 28.2% identity (58.4% similar) in 202 aa overlap (25-222:17-214) 10 20 30 40 50 60 pF1KE4 MARCFSLVLLLTSIWTTRLLVQGSLRAEELSIQVSCRIMGITLVSKKANQQLNFTEAKEA : .......::. :. : :.. ... ::: . XP_011 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADL 10 20 30 40 50 70 80 90 100 110 120 pF1KE4 CRLLGLSLAGKDQVETALKASFETCSYGWVGDGFVVISRISPNPKCGKNGVGVLIRKVPV :. .. .: :.: ::. .:::: ::.. .: ::: :: :: :. :..:: : . XP_011 CKAFNSTLPTMAQMEKALSIGFETCRYGFI-EGHVVIPRIHPNSICAANNTGVYILTSNT 60 70 80 90 100 110 130 140 150 160 170 pF1KE4 SRQFAAYCYNSSDTWTNSC--IPEIITTKD-PIFNTQTATQTTEFIVSDSTYSVASPYST : :. .::.:.: ..: . .. .. : :: : . . :.. :. . : . .: . XP_011 S-QYDTYCFNASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRY-VQKGEYRT-NPEDI 120 130 140 150 160 180 190 200 210 220 230 pF1KE4 IPA-PTTTPPAPASTSIPRRKKLICVTEVFMETSTMSTETEPFVENKAAFKNEAAGFGGV :. :: . .:.: . . .: . . : :.. . XP_011 YPSNPTDDDVSSGSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATNMDSSH 170 180 190 200 210 220 240 250 260 270 280 290 pF1KE4 PTALLVLALLFFGAAAGLGFCYVKRYVKAFPFTNKNQQKEMIETKVVKEEKANDSNPNEE XP_011 SITLQPTANPNTGLVEDLDRTGPLSMTTQQSNSQSFSTSHEGLEEDKDHPTTSTLTSSRD 230 240 250 260 270 280 >>XP_016874073 (OMIM: 107269,609027) PREDICTED: CD44 ant (446 aa) initn: 210 init1: 150 opt: 270 Z-score: 293.8 bits: 63.1 E(85289): 1.3e-09 Smith-Waterman score: 270; 28.2% identity (58.4% similar) in 202 aa overlap (25-222:17-214) 10 20 30 40 50 60 pF1KE4 MARCFSLVLLLTSIWTTRLLVQGSLRAEELSIQVSCRIMGITLVSKKANQQLNFTEAKEA : .......::. :. : :.. ... ::: . XP_016 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADL 10 20 30 40 50 70 80 90 100 110 120 pF1KE4 CRLLGLSLAGKDQVETALKASFETCSYGWVGDGFVVISRISPNPKCGKNGVGVLIRKVPV :. .. .: :.: ::. .:::: ::.. .: ::: :: :: :. :..:: : . XP_016 CKAFNSTLPTMAQMEKALSIGFETCRYGFI-EGHVVIPRIHPNSICAANNTGVYILTSNT 60 70 80 90 100 110 130 140 150 160 170 pF1KE4 SRQFAAYCYNSSDTWTNSC--IPEIITTKD-PIFNTQTATQTTEFIVSDSTYSVASPYST : :. .::.:.: ..: . .. .. : :: : . . :.. :. . : . .: . XP_016 S-QYDTYCFNASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRY-VQKGEYRT-NPEDI 120 130 140 150 160 180 190 200 210 220 230 pF1KE4 IPA-PTTTPPAPASTSIPRRKKLICVTEVFMETSTMSTETEPFVENKAAFKNEAAGFGGV :. :: . .:.: . . .: . . : :.. . XP_016 YPSNPTDDDVSSGSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATTLMSTS 170 180 190 200 210 220 240 250 260 270 280 290 pF1KE4 PTALLVLALLFFGAAAGLGFCYVKRYVKAFPFTNKNQQKEMIETKVVKEEKANDSNPNEE XP_016 ATATETATKRQETWDWFSWLFLPSESKNHLHTTTQMAGTSSNTISAGWEPNEENEDERDR 230 240 250 260 270 280 322 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 23:15:19 2016 done: Sat Nov 5 23:15:20 2016 Total Scan time: 7.780 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]