FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4313, 322 aa
  1>>>pF1KE4313 322 - 322 aa - 322 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6841+/-0.000743; mu= 9.8922+/- 0.045
 mean_var=84.9997+/-16.598, 0's: 0 Z-trim(110.3): 27  B-trim: 0 in 0/51
 Lambda= 0.139112
 statistics sampled from 11511 (11537) to 11511 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.707), E-opt: 0.2 (0.354), width:  16
 Scan time:  2.810

The best scores are:                                      opt bits E(32554)
CCDS7804.1 LYVE1 gene_id:10894|Hs108|chr11         ( 322) 2071 424.9 4.2e-119


>>CCDS7804.1 LYVE1 gene_id:10894|Hs108|chr11              (322 aa)
 initn: 2071 init1: 2071 opt: 2071  Z-score: 2251.8  bits: 424.9 E(32554): 4.2e-119
Smith-Waterman score: 2071; 99.7% identity (99.7% similar) in 322 aa overlap (1-322:1-322)

               10        20        30        40        50        60
pF1KE4 MARCFSLVLLLTSIWTTRLLVQGSLRAEELSIQVSCRIMGITLVSKKANQQLNFTEAKEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 MARCFSLVLLLTSIWTTRLLVQGSLRAEELSIQVSCRIMGITLVSKKANQQLNFTEAKEA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 CRLLGLSLAGKDQVETALKASFETCSYGWVGDGFVVISRISPNPKCGKNGVGVLIRKVPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::
CCDS78 CRLLGLSLAGKDQVETALKASFETCSYGWVGDGFVVISRISPNPKCGKNGVGVLIWKVPV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 SRQFAAYCYNSSDTWTNSCIPEIITTKDPIFNTQTATQTTEFIVSDSTYSVASPYSTIPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 SRQFAAYCYNSSDTWTNSCIPEIITTKDPIFNTQTATQTTEFIVSDSTYSVASPYSTIPA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 PTTTPPAPASTSIPRRKKLICVTEVFMETSTMSTETEPFVENKAAFKNEAAGFGGVPTAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 PTTTPPAPASTSIPRRKKLICVTEVFMETSTMSTETEPFVENKAAFKNEAAGFGGVPTAL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 LVLALLFFGAAAGLGFCYVKRYVKAFPFTNKNQQKEMIETKVVKEEKANDSNPNEESKKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 LVLALLFFGAAAGLGFCYVKRYVKAFPFTNKNQQKEMIETKVVKEEKANDSNPNEESKKT
              250       260       270       280       290       300

              310       320  
pF1KE4 DKNPEESKSPSKTTVRCLEAEV
       ::::::::::::::::::::::
CCDS78 DKNPEESKSPSKTTVRCLEAEV
              310       320  




322 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 23:15:18 2016 done: Sat Nov  5 23:15:19 2016
 Total Scan time:  2.810 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]