FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1311, 469 aa 1>>>pF1KE1311 469 - 469 aa - 469 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.9773+/-0.000895; mu= 15.6124+/- 0.054 mean_var=95.4023+/-18.780, 0's: 0 Z-trim(107.8): 20 B-trim: 0 in 0/51 Lambda= 0.131309 statistics sampled from 9767 (9783) to 9767 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.665), E-opt: 0.2 (0.301), width: 16 Scan time: 2.850 The best scores are: opt bits E(32554) CCDS7567.1 PDCD4 gene_id:27250|Hs108|chr10 ( 469) 3071 592.2 4e-169 CCDS44478.1 PDCD4 gene_id:27250|Hs108|chr10 ( 458) 2973 573.6 1.5e-163 >>CCDS7567.1 PDCD4 gene_id:27250|Hs108|chr10 (469 aa) initn: 3071 init1: 3071 opt: 3071 Z-score: 3149.9 bits: 592.2 E(32554): 4e-169 Smith-Waterman score: 3071; 99.6% identity (99.8% similar) in 469 aa overlap (1-469:1-469) 10 20 30 40 50 60 pF1KE1 MDVENEQILNVNPADPDNLSDSLFSGDEENAGTEEVKNEINGNWISAYSINEARINAKAK :::::::::::::::::::::::::::::::::::.::::::::::: :::::::::::: CCDS75 MDVENEQILNVNPADPDNLSDSLFSGDEENAGTEEIKNEINGNWISASSINEARINAKAK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 RRLRKNSSRDSGRGDSVSDSGSDALRSGLTVPTSPKGRLLDRRSRSGKGRGLPKKGGAGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 RRLRKNSSRDSGRGDSVSDSGSDALRSGLTVPTSPKGRLLDRRSRSGKGRGLPKKGGAGG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 KGVWGTPGQVYDVEEVDVKDPNYDDDQENCVYETVVLPLDERAFEKTLTPIIQEYFEHGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 KGVWGTPGQVYDVEEVDVKDPNYDDDQENCVYETVVLPLDERAFEKTLTPIIQEYFEHGD 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 TNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 TNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSF 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 DKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 DKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATV 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 LLSMSKGGKRKDSVWGSGGGQQSVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 LLSMSKGGKRKDSVWGSGGGQQSVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFH 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE1 HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIYNEIPDINLDVP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIYNEIPDINLDVP 370 380 390 400 410 420 430 440 450 460 pF1KE1 HSYSVLERFVEECFQAGIISKQLRDLCPSRGRKRFVSEGDGGRLKPESY ::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 HSYSVLERFVEECFQAGIISKQLRDLCPSRGRKRFVSEGDGGRLKPESY 430 440 450 460 >>CCDS44478.1 PDCD4 gene_id:27250|Hs108|chr10 (458 aa) initn: 2973 init1: 2973 opt: 2973 Z-score: 3049.7 bits: 573.6 E(32554): 1.5e-163 Smith-Waterman score: 2973; 99.6% identity (99.8% similar) in 454 aa overlap (16-469:5-458) 10 20 30 40 50 60 pF1KE1 MDVENEQILNVNPADPDNLSDSLFSGDEENAGTEEVKNEINGNWISAYSINEARINAKAK ::::::::::::::::::::.::::::::::: :::::::::::: CCDS44 MTKYPDNLSDSLFSGDEENAGTEEIKNEINGNWISASSINEARINAKAK 10 20 30 40 70 80 90 100 110 120 pF1KE1 RRLRKNSSRDSGRGDSVSDSGSDALRSGLTVPTSPKGRLLDRRSRSGKGRGLPKKGGAGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 RRLRKNSSRDSGRGDSVSDSGSDALRSGLTVPTSPKGRLLDRRSRSGKGRGLPKKGGAGG 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE1 KGVWGTPGQVYDVEEVDVKDPNYDDDQENCVYETVVLPLDERAFEKTLTPIIQEYFEHGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 KGVWGTPGQVYDVEEVDVKDPNYDDDQENCVYETVVLPLDERAFEKTLTPIIQEYFEHGD 110 120 130 140 150 160 190 200 210 220 230 240 pF1KE1 TNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 TNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSF 170 180 190 200 210 220 250 260 270 280 290 300 pF1KE1 DKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 DKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATV 230 240 250 260 270 280 310 320 330 340 350 360 pF1KE1 LLSMSKGGKRKDSVWGSGGGQQSVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 LLSMSKGGKRKDSVWGSGGGQQSVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFH 290 300 310 320 330 340 370 380 390 400 410 420 pF1KE1 HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIYNEIPDINLDVP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIYNEIPDINLDVP 350 360 370 380 390 400 430 440 450 460 pF1KE1 HSYSVLERFVEECFQAGIISKQLRDLCPSRGRKRFVSEGDGGRLKPESY ::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 HSYSVLERFVEECFQAGIISKQLRDLCPSRGRKRFVSEGDGGRLKPESY 410 420 430 440 450 469 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 00:29:53 2016 done: Mon Nov 7 00:29:54 2016 Total Scan time: 2.850 Total Display time: 0.020 Function used was FASTA [36.3.4 Apr, 2011]