FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3648, 234 aa 1>>>pF1KE3648 234 - 234 aa - 234 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2758+/-0.000868; mu= 14.1821+/- 0.053 mean_var=71.6049+/-14.102, 0's: 0 Z-trim(107.3): 175 B-trim: 304 in 1/49 Lambda= 0.151566 statistics sampled from 9300 (9494) to 9300 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.682), E-opt: 0.2 (0.292), width: 16 Scan time: 2.210 The best scores are: opt bits E(32554) CCDS9512.1 RAB20 gene_id:55647|Hs108|chr13 ( 234) 1562 350.5 5.5e-97 CCDS9003.1 RAB21 gene_id:23011|Hs108|chr12 ( 225) 303 75.2 3.9e-14 CCDS2520.1 RAB17 gene_id:64284|Hs108|chr2 ( 212) 279 69.9 1.4e-12 CCDS45826.1 RAB31 gene_id:11031|Hs108|chr18 ( 195) 274 68.8 2.9e-12 CCDS8264.1 RAB30 gene_id:27314|Hs108|chr11 ( 203) 272 68.4 4e-12 CCDS2633.1 RAB5A gene_id:5868|Hs108|chr3 ( 215) 270 68.0 5.7e-12 CCDS33497.1 RAB22A gene_id:57403|Hs108|chr20 ( 194) 267 67.3 8.2e-12 CCDS12339.1 RAB8A gene_id:4218|Hs108|chr19 ( 207) 267 67.3 8.7e-12 CCDS10183.1 RAB8B gene_id:51762|Hs108|chr15 ( 207) 266 67.1 1e-11 CCDS11419.1 RAB5C gene_id:5878|Hs108|chr17 ( 216) 266 67.1 1e-11 CCDS58551.1 RAB5C gene_id:5878|Hs108|chr17 ( 249) 266 67.1 1.2e-11 CCDS3052.1 RAB7A gene_id:7879|Hs108|chr3 ( 207) 257 65.1 3.9e-11 CCDS8900.1 RAB5B gene_id:5869|Hs108|chr12 ( 215) 257 65.1 4.1e-11 CCDS1720.1 RAB10 gene_id:10890|Hs108|chr2 ( 200) 256 64.9 4.5e-11 CCDS42410.1 RAB12 gene_id:201475|Hs108|chr18 ( 244) 257 65.2 4.5e-11 CCDS14515.1 RAB9B gene_id:51209|Hs108|chrX ( 201) 255 64.7 5.2e-11 >>CCDS9512.1 RAB20 gene_id:55647|Hs108|chr13 (234 aa) initn: 1562 init1: 1562 opt: 1562 Z-score: 1854.7 bits: 350.5 E(32554): 5.5e-97 Smith-Waterman score: 1562; 100.0% identity (100.0% similar) in 234 aa overlap (1-234:1-234) 10 20 30 40 50 60 pF1KE3 MRKPDSKIVLLGDMNVGKTSLLQRYMERRFPDTVSTVGGAFYLKQWRSYNISIWDTAGRE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS95 MRKPDSKIVLLGDMNVGKTSLLQRYMERRFPDTVSTVGGAFYLKQWRSYNISIWDTAGRE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 QFHGLGSMYCRGAAAIILTYDVNHRQSLVELEDRFLGLTDTASKDCLFAIVGNKVDLTEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS95 QFHGLGSMYCRGAAAIILTYDVNHRQSLVELEDRFLGLTDTASKDCLFAIVGNKVDLTEE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 GALAGQEKEECSPNMDAGDRVSPRAPKQVQLEDAVALYKKILKYKMLDEQDVPAAEQMCF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS95 GALAGQEKEECSPNMDAGDRVSPRAPKQVQLEDAVALYKKILKYKMLDEQDVPAAEQMCF 130 140 150 160 170 180 190 200 210 220 230 pF1KE3 ETSAKTGYNVDLLFETLFDLVVPMILQQRAERPSHTVDISSHKPPKRTRSGCCA :::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS95 ETSAKTGYNVDLLFETLFDLVVPMILQQRAERPSHTVDISSHKPPKRTRSGCCA 190 200 210 220 230 >>CCDS9003.1 RAB21 gene_id:23011|Hs108|chr12 (225 aa) initn: 312 init1: 196 opt: 303 Z-score: 367.2 bits: 75.2 E(32554): 3.9e-14 Smith-Waterman score: 303; 34.1% identity (65.3% similar) in 170 aa overlap (7-170:21-189) 10 20 30 40 pF1KE3 MRKPDSKIVLLGDMNVGKTSLLQRYMERRFPDT-VSTVGGAFYLKQ :.::::. ::::::. :: : .: : ..:. ..: :. CCDS90 MAAAGGGGGGAAAAGRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKK 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE3 W----RSYNISIWDTAGREQFHGLGSMYCRGAAAIILTYDVNHRQSLVELEDRFLGLTDT . :..::::::.:.::.:: .: : . . ::.::.. ..:. .... : CCDS90 LNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKM 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE3 ASKDCLFAIVGNKVDLTEEGALAGQEKEECSPNMDAGD-RVSPRAPKQVQLEDAVALYKK ... . :::::.:: .: .. :: : . .. : ..: . : .. : . : :. CCDS90 LGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIE-ELFLDLCKR 130 140 150 160 170 170 180 190 200 210 220 pF1KE3 ILKYKMLDEQDVPAAEQMCFETSAKTGYNVDLLFETLFDLVVPMILQQRAERPSHTVDIS ... ..::. CCDS90 MIETAQVDERAKGNGSSQPGTARRGVQIIDDEPQAQTSGGGCCSSG 180 190 200 210 220 >>CCDS2520.1 RAB17 gene_id:64284|Hs108|chr2 (212 aa) initn: 321 init1: 136 opt: 279 Z-score: 339.2 bits: 69.9 E(32554): 1.4e-12 Smith-Waterman score: 279; 38.0% identity (68.2% similar) in 129 aa overlap (7-130:21-149) 10 20 30 40 pF1KE3 MRKPDSKIVLLGDMNVGKTSLLQRYMERRFPDTVSTVGGAFYLK-- :.::::. .:::.:: ::.. : . . ::: ::. : CCDS25 MAQAHRTPQPRAAPSQPRVFKLVLLGSGSVGKSSLALRYVKNDFKSILPTVGCAFFTKVV 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE3 --QWRSYNISIWDTAGREQFHGLGSMYCRGAAAIILTYDVNHRQSLVELEDRFLGLTDTA : .. ::::::.:..:.. .: ::: : .:.::.....:... .. . : . CCDS25 DVGATSLKLEIWDTAGQEKYHSVCHLYFRGANAALLVYDITRKDSFLKAQQWLKDLEEEL 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE3 SK-DCLFAIVGNKVDLTEEGALAGQEKEECSPNMDAGDRVSPRAPKQVQLEDAVALYKKI . : .::::.::..: .. :: .: CCDS25 HPGEVLVMLVGNKTDLSQEREVTFQEGKEFADSQKLLFMETSAKLNHQVSEVFNTVAQEL 130 140 150 160 170 180 >>CCDS45826.1 RAB31 gene_id:11031|Hs108|chr18 (195 aa) initn: 329 init1: 191 opt: 274 Z-score: 333.8 bits: 68.8 E(32554): 2.9e-12 Smith-Waterman score: 274; 34.6% identity (69.1% similar) in 136 aa overlap (7-137:8-143) 10 20 30 40 50 pF1KE3 MRKPDSKIVLLGDMNVGKTSLLQRYMERRFPDTVS-TVGGAFYLKQWRSYN----ISIW :. :::: .:::.:.. :... .: ..: :.:..:. : : . :: CCDS45 MMAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIW 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE3 DTAGREQFHGLGSMYCRGAAAIILTYDVNHRQSLVELEDRFLGLTDTASKDCLFAIVGNK ::::.:.::.:. :: ::.:: ...::.....:. :. : . . .. ..::.::: CCDS45 DTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNK 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE3 VDLTEEGALAGQEKEECSPNMDAGDRVSPRAPKQVQLEDAVALYKKILKYKMLDEQDVPA ::.. . .. .: . .. : CCDS45 CDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDPHENGNNGT 130 140 150 160 170 180 >>CCDS8264.1 RAB30 gene_id:27314|Hs108|chr11 (203 aa) initn: 302 init1: 196 opt: 272 Z-score: 331.2 bits: 68.4 E(32554): 4e-12 Smith-Waterman score: 272; 37.0% identity (70.4% similar) in 135 aa overlap (7-136:11-145) 10 20 30 40 50 pF1KE3 MRKPDSKIVLLGDMNVGKTSLLQRYMERRFPDTV-STVGGAFYLK----QWRSYNI ::::.:. .:::: :..:. . :: .:.: :..: . .. .. CCDS82 MSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKL 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE3 SIWDTAGREQFHGLGSMYCRGAAAIILTYDVNHRQSLVELEDRFLGLTDTASKDCLFAIV .::::::.:.:... . : :.: :.:::::.. ..:. : . . . . ::. . ..: CCDS82 QIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLV 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE3 GNKVDLTEEGALAGQEKEECSPNMDAGDRVSPRAPKQVQLEDAVALYKKILKYKMLDEQD :::.::.:. .. :. :: : .: CCDS82 GNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTLV 130 140 150 160 170 180 >>CCDS2633.1 RAB5A gene_id:5868|Hs108|chr3 (215 aa) initn: 351 init1: 195 opt: 270 Z-score: 328.4 bits: 68.0 E(32554): 5.7e-12 Smith-Waterman score: 270; 37.5% identity (70.3% similar) in 128 aa overlap (7-129:22-149) 10 20 30 40 pF1KE3 MRKPDSKIVLLGDMNVGKTSLLQRYMERRFPD-TVSTVGGAFYLK :.::::. :::.::. :... .: . ::.:.:: . CCDS26 MASRGATRPNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQ 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE3 QW----RSYNISIWDTAGREQFHGLGSMYCRGAAAIILTYDVNHRQSLVELEDRFLGLTD . .. ::::::.:..:.:. :: ::: : :..::.....:... .. : CCDS26 TVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE3 TASKDCLFAIVGNKVDLTEEGALAGQEKEECSPNMDAGDRVSPRAPKQVQLEDAVALYKK :: . ..:. :::.::... :. :: . CCDS26 QASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKK 130 140 150 160 170 180 >>CCDS33497.1 RAB22A gene_id:57403|Hs108|chr20 (194 aa) initn: 287 init1: 174 opt: 267 Z-score: 325.5 bits: 67.3 E(32554): 8.2e-12 Smith-Waterman score: 267; 38.1% identity (72.9% similar) in 118 aa overlap (7-119:7-124) 10 20 30 40 50 pF1KE3 MRKPDSKIVLLGDMNVGKTSLLQRYMERRF-PDTVSTVGGAFYLK--QWRS--YNISIWD :. :::: .:::.:.. :..: : :. :.:..:. : :... ... ::: CCDS33 MALRELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWD 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE3 TAGREQFHGLGSMYCRGAAAIILTYDVNHRQSLVELEDRFLGLTDTASKDCLFAIVGNKV :::.:.:..:. :: ::.:: :..::....... :.. : . . . . ::.::: CCDS33 TAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVKELRQHGPPNIVVAIAGNKC 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE3 DLTEEGALAGQEKEECSPNMDAGDRVSPRAPKQVQLEDAVALYKKILKYKMLDEQDVPAA :: . CCDS33 DLIDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPSTDANLPSGGKGF 130 140 150 160 170 180 >>CCDS12339.1 RAB8A gene_id:4218|Hs108|chr19 (207 aa) initn: 252 init1: 170 opt: 267 Z-score: 325.1 bits: 67.3 E(32554): 8.7e-12 Smith-Waterman score: 267; 30.7% identity (66.3% similar) in 166 aa overlap (7-166:10-173) 10 20 30 40 50 pF1KE3 MRKPDSKIVLLGDMNVGKTSLLQRYMERRFPDT-VSTVGGAFYLK----QWRSYNIS :..:.:: .:::: .: :. : : .: .::.: : .. . . ... CCDS12 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQ 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE3 IWDTAGREQFHGLGSMYCRGAAAIILTYDVNHRQSLVELEDRFLGLTDTASKDCLFAIVG ::::::.:.:. . . : ::: .:.:.::.....:. .... . .. . :: : :.: CCDS12 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILG 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE3 NKVDLTEEGALAGQEKEECSPNMDAGDRVSPRAPK-QVQLEDAVALYKKILKYKMLDEQD :: :.... .. .. :. . .: : . . : ....:.: . .: :: CCDS12 NKCDVNDKRQVSKERGEKLA--LDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLE 130 140 150 160 170 180 190 200 210 220 230 pF1KE3 VPAAEQMCFETSAKTGYNVDLLFETLFDLVVPMILQQRAERPSHTVDISSHKPPKRTRSG CCDS12 GNSPQGSNQGVKITPDQQKRSSFFRCVLL 180 190 200 >>CCDS10183.1 RAB8B gene_id:51762|Hs108|chr15 (207 aa) initn: 263 init1: 175 opt: 266 Z-score: 323.9 bits: 67.1 E(32554): 1e-11 Smith-Waterman score: 266; 30.4% identity (66.5% similar) in 194 aa overlap (7-188:10-201) 10 20 30 40 50 pF1KE3 MRKPDSKIVLLGDMNVGKTSLLQRYMERRFPDT-VSTVGGAFYLK----QWRSYNIS :..:.:: .:::: :: :. : : : .::.: : .. . .. ... CCDS10 MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQ 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE3 IWDTAGREQFHGLGSMYCRGAAAIILTYDVNHRQSLVELEDRFLGLTDTASKDCLFAIVG ::::::.:.:. . . : ::: .:.:.::.....:. .... . .. . ::.: :.: CCDS10 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILG 70 80 90 100 110 120 120 130 140 150 160 pF1KE3 NKVDLTEEGALAGQEKEECSPNMDAGDR-VSPRAPKQVQLEDAV-ALYKKI---LKYKML :: :.... .. .. :. . .: : . . : .....:.: .: . : :. :: CCDS10 NKCDMNDKRQVSKERGEKLA--IDYGIKFLETSAKSSANVEEAFFTLARDIMTKLNRKMN 130 140 150 160 170 170 180 190 200 210 220 pF1KE3 DEQDVPAAE--QMCFETSAKTGYNVDLLFETLFDLVVPMILQQRAERPSHTVDISSHKPP : ... :. .. . : ::.. CCDS10 DSNSAGAGGPVKITENRSKKTSFFRCSLL 180 190 200 >>CCDS11419.1 RAB5C gene_id:5878|Hs108|chr17 (216 aa) initn: 346 init1: 191 opt: 266 Z-score: 323.7 bits: 67.1 E(32554): 1e-11 Smith-Waterman score: 266; 36.7% identity (69.5% similar) in 128 aa overlap (7-129:23-150) 10 20 30 40 pF1KE3 MRKPDSKIVLLGDMNVGKTSLLQRYMERRFPD-TVSTVGGAFYL :.::::. :::.::. :... .: . ::.:.:: CCDS11 MAGRGGAARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLT 10 20 30 40 50 60 50 60 70 80 90 pF1KE3 KQW----RSYNISIWDTAGREQFHGLGSMYCRGAAAIILTYDVNHRQSLVELEDRFLGLT . . .. ::::::.:..:.:. :: ::: : :..::... ..... .. : CCDS11 QTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQ 70 80 90 100 110 120 100 110 120 130 140 150 pF1KE3 DTASKDCLFAIVGNKVDLTEEGALAGQEKEECSPNMDAGDRVSPRAPKQVQLEDAVALYK :: . ..:..:::.::. . :. :: . CCDS11 RQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAK 130 140 150 160 170 180 234 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 00:31:10 2016 done: Mon Nov 7 00:31:11 2016 Total Scan time: 2.210 Total Display time: 0.020 Function used was FASTA [36.3.4 Apr, 2011]