FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1464, 186 aa 1>>>pF1KE1464 186 - 186 aa - 186 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.8622+/-0.00034; mu= 10.9720+/- 0.021 mean_var=86.5622+/-16.836, 0's: 0 Z-trim(115.4): 19 B-trim: 0 in 0/53 Lambda= 0.137851 statistics sampled from 25758 (25776) to 25758 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.687), E-opt: 0.2 (0.302), width: 16 Scan time: 5.800 The best scores are: opt bits E(85289) NP_057472 (OMIM: 604962) T-cell receptor-associate ( 186) 1242 256.4 2e-68 NP_001304676 (OMIM: 604962) T-cell receptor-associ ( 149) 983 204.8 5.3e-53 >>NP_057472 (OMIM: 604962) T-cell receptor-associated tr (186 aa) initn: 1242 init1: 1242 opt: 1242 Z-score: 1349.5 bits: 256.4 E(85289): 2e-68 Smith-Waterman score: 1242; 100.0% identity (100.0% similar) in 186 aa overlap (1-186:1-186) 10 20 30 40 50 60 pF1KE1 MSGISGCPFFLWGLLALLGLALVISLIFNISHYVEKQRQDKMYSYSSDHTRVDEYYIEDT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 MSGISGCPFFLWGLLALLGLALVISLIFNISHYVEKQRQDKMYSYSSDHTRVDEYYIEDT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 PIYGNLDDMISEPMDENCYEQMKARPEKSVNKMQEATPSAQATNETQMCYASLDHSVKGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 PIYGNLDDMISEPMDENCYEQMKARPEKSVNKMQEATPSAQATNETQMCYASLDHSVKGK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 RRKPRKQNTHFSDKDGDEQLHAIDASVSKTTLVDSFSPESQAVEENIHDDPIRLFGLIRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 RRKPRKQNTHFSDKDGDEQLHAIDASVSKTTLVDSFSPESQAVEENIHDDPIRLFGLIRA 130 140 150 160 170 180 pF1KE1 KREPIN :::::: NP_057 KREPIN >>NP_001304676 (OMIM: 604962) T-cell receptor-associated (149 aa) initn: 983 init1: 983 opt: 983 Z-score: 1072.6 bits: 204.8 E(85289): 5.3e-53 Smith-Waterman score: 983; 100.0% identity (100.0% similar) in 147 aa overlap (40-186:3-149) 10 20 30 40 50 60 pF1KE1 FLWGLLALLGLALVISLIFNISHYVEKQRQDKMYSYSSDHTRVDEYYIEDTPIYGNLDDM :::::::::::::::::::::::::::::: NP_001 MSDKMYSYSSDHTRVDEYYIEDTPIYGNLDDM 10 20 30 70 80 90 100 110 120 pF1KE1 ISEPMDENCYEQMKARPEKSVNKMQEATPSAQATNETQMCYASLDHSVKGKRRKPRKQNT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ISEPMDENCYEQMKARPEKSVNKMQEATPSAQATNETQMCYASLDHSVKGKRRKPRKQNT 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE1 HFSDKDGDEQLHAIDASVSKTTLVDSFSPESQAVEENIHDDPIRLFGLIRAKREPIN ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 HFSDKDGDEQLHAIDASVSKTTLVDSFSPESQAVEENIHDDPIRLFGLIRAKREPIN 100 110 120 130 140 186 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 00:32:58 2016 done: Mon Nov 7 00:32:59 2016 Total Scan time: 5.800 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]