FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1358, 147 aa 1>>>pF1KE1358 147 - 147 aa - 147 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.7889+/-0.000715; mu= 13.6757+/- 0.043 mean_var=51.4110+/-10.579, 0's: 0 Z-trim(107.1): 19 B-trim: 0 in 0/48 Lambda= 0.178874 statistics sampled from 9356 (9367) to 9356 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.686), E-opt: 0.2 (0.288), width: 16 Scan time: 1.600 The best scores are: opt bits E(32554) CCDS3749.1 MGST2 gene_id:4258|Hs108|chr4 ( 147) 969 257.4 2.3e-69 CCDS34316.1 LTC4S gene_id:4056|Hs108|chr5 ( 150) 409 112.9 7.5e-26 CCDS56339.1 MGST2 gene_id:4258|Hs108|chr4 ( 77) 329 92.1 6.9e-20 CCDS9337.1 ALOX5AP gene_id:241|Hs108|chr13 ( 161) 276 78.6 1.7e-15 CCDS73558.1 ALOX5AP gene_id:241|Hs108|chr13 ( 218) 276 78.6 2.2e-15 >>CCDS3749.1 MGST2 gene_id:4258|Hs108|chr4 (147 aa) initn: 969 init1: 969 opt: 969 Z-score: 1358.7 bits: 257.4 E(32554): 2.3e-69 Smith-Waterman score: 969; 100.0% identity (100.0% similar) in 147 aa overlap (1-147:1-147) 10 20 30 40 50 60 pF1KE1 MAGNSILLAAVSILSACQQSYFALQVGKARLKYKVTPPAVTGSPEFERVFRAQQNCVEFY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS37 MAGNSILLAAVSILSACQQSYFALQVGKARLKYKVTPPAVTGSPEFERVFRAQQNCVEFY 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 PIFIITLWMAGWYFNQVFATCLGLVYIYGRHLYFWGYSEAAKKRITGFRLSLGILALLTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS37 PIFIITLWMAGWYFNQVFATCLGLVYIYGRHLYFWGYSEAAKKRITGFRLSLGILALLTL 70 80 90 100 110 120 130 140 pF1KE1 LGALGIANSFLDEYLDLNIAKKLRRQF ::::::::::::::::::::::::::: CCDS37 LGALGIANSFLDEYLDLNIAKKLRRQF 130 140 >>CCDS34316.1 LTC4S gene_id:4056|Hs108|chr5 (150 aa) initn: 407 init1: 407 opt: 409 Z-score: 577.6 bits: 112.9 E(32554): 7.5e-26 Smith-Waterman score: 409; 45.1% identity (70.8% similar) in 144 aa overlap (1-144:1-144) 10 20 30 40 50 60 pF1KE1 MAGNSILLAAVSILSACQQSYFALQVGKARLKYKVTPPAVTGSPEFERVFRAQQNCVEFY : . :::::..:.. :.::.::: .:: ..:.:: .:: ::::::.::: :: :.. CCDS34 MKDEVALLAAVTLLGVLLQAYFSLQVISARRAFRVSPPLTTGPPEFERVYRAQVNCSEYF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 PIFIITLWMAGWYFNQVFATCLGLVYIYGRHLYFWGYSEAAKKRITGFRLSLGILALLTL :.:. :::.:: .:.. :. ::::...: :: ::...:. :.. . : : ::. CCDS34 PLFLATLWVAGIFFHEGAAALCGLVYLFARLRYFQGYARSAQLRLAPLYASARALWLLVA 70 80 90 100 110 120 130 140 pF1KE1 LGALGIANSFLDEYLDLNIAKKLRRQF :.:::. :: : . .:: CCDS34 LAALGLLAHFLPAALRAALLGRLRTLLPWA 130 140 150 >>CCDS56339.1 MGST2 gene_id:4258|Hs108|chr4 (77 aa) initn: 329 init1: 329 opt: 329 Z-score: 470.5 bits: 92.1 E(32554): 6.9e-20 Smith-Waterman score: 329; 98.1% identity (100.0% similar) in 53 aa overlap (1-53:1-53) 10 20 30 40 50 60 pF1KE1 MAGNSILLAAVSILSACQQSYFALQVGKARLKYKVTPPAVTGSPEFERVFRAQQNCVEFY ::::::::::::::::::::::::::::::::::::::::::::::::::::. CCDS56 MAGNSILLAAVSILSACQQSYFALQVGKARLKYKVTPPAVTGSPEFERVFRAHFCYLSGS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 PIFIITLWMAGWYFNQVFATCLGLVYIYGRHLYFWGYSEAAKKRITGFRLSLGILALLTL CCDS56 GVHIWPSPILLGIFRSC 70 >>CCDS9337.1 ALOX5AP gene_id:241|Hs108|chr13 (161 aa) initn: 288 init1: 276 opt: 276 Z-score: 391.6 bits: 78.6 E(32554): 1.7e-15 Smith-Waterman score: 276; 37.2% identity (62.8% similar) in 129 aa overlap (3-131:7-135) 10 20 30 40 50 pF1KE1 MAGNSILLAAVSILSACQQSYFALQVGKARLKYKVTPPAVTGSPEFERVFRAQQNC :: .::: :...:. :...:: .: . . ::. ::::. :.::: CCDS93 MDQETVGNVVLLAIVTLISVVQNGFFAHKVEHESRTQNGRSFQRTGTLAFERVYTANQNC 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE1 VEFYPIFIITLWMAGWYFNQVFATCLGLVYIYGRHLYFWGYSEAAKKRITGFRLSLGILA :. :: :. .:: :: .:: :. ::.:.. :. :: :: . :. .. :. CCDS93 VDAYPTFLAVLWSAGLLCSQVPAAFAGLMYLFVRQKYFVGYLGERTQSTPGYIFGKRIIL 70 80 90 100 110 120 120 130 140 pF1KE1 LLTLLGALGIANSFLDEYLDLNIAKKLRRQF .: :... :: : .: CCDS93 FLFLMSVAGIFNYYLIFFFGSDFENYIKTISTTISPLLLIP 130 140 150 160 >>CCDS73558.1 ALOX5AP gene_id:241|Hs108|chr13 (218 aa) initn: 276 init1: 276 opt: 276 Z-score: 389.6 bits: 78.6 E(32554): 2.2e-15 Smith-Waterman score: 276; 37.2% identity (62.8% similar) in 129 aa overlap (3-131:64-192) 10 20 30 pF1KE1 MAGNSILLAAVSILSACQQSYFALQVGKARLK :: .::: :...:. :...:: .: . CCDS73 ISHQCWAGCAAGGRAVLSGEPEANMDQETVGNVVLLAIVTLISVVQNGFFAHKVEHESRT 40 50 60 70 80 90 40 50 60 70 80 90 pF1KE1 YKVTPPAVTGSPEFERVFRAQQNCVEFYPIFIITLWMAGWYFNQVFATCLGLVYIYGRHL . ::. ::::. :.::::. :: :. .:: :: .:: :. ::.:.. :. CCDS73 QNGRSFQRTGTLAFERVYTANQNCVDAYPTFLAVLWSAGLLCSQVPAAFAGLMYLFVRQK 100 110 120 130 140 150 100 110 120 130 140 pF1KE1 YFWGYSEAAKKRITGFRLSLGILALLTLLGALGIANSFLDEYLDLNIAKKLRRQF :: :: . :. .. :. .: :... :: : .: CCDS73 YFVGYLGERTQSTPGYIFGKRIILFLFLMSVAGIFNYYLIFFFGSDFENYIKTISTTISP 160 170 180 190 200 210 CCDS73 LLLIP 147 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 15:30:01 2016 done: Mon Nov 7 15:30:01 2016 Total Scan time: 1.600 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]