Result of FASTA (ccds) for
pFN21AE1358
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1358, 147 aa
1>>>pF1KE1358 147 - 147 aa - 147 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.7889+/-0.000715; mu= 13.6757+/- 0.043
mean_var=51.4110+/-10.579, 0's: 0 Z-trim(107.1): 19 B-trim: 0 in 0/48
Lambda= 0.178874
statistics sampled from 9356 (9367) to 9356 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.686), E-opt: 0.2 (0.288), width: 16
Scan time: 1.600
The best scores are: opt bits E(32554)
CCDS3749.1 MGST2 gene_id:4258|Hs108|chr4 ( 147) 969 257.4 2.3e-69
CCDS34316.1 LTC4S gene_id:4056|Hs108|chr5 ( 150) 409 112.9 7.5e-26
CCDS56339.1 MGST2 gene_id:4258|Hs108|chr4 ( 77) 329 92.1 6.9e-20
CCDS9337.1 ALOX5AP gene_id:241|Hs108|chr13 ( 161) 276 78.6 1.7e-15
CCDS73558.1 ALOX5AP gene_id:241|Hs108|chr13 ( 218) 276 78.6 2.2e-15
>>CCDS3749.1 MGST2 gene_id:4258|Hs108|chr4 (147 aa)
initn: 969 init1: 969 opt: 969 Z-score: 1358.7 bits: 257.4 E(32554): 2.3e-69
Smith-Waterman score: 969; 100.0% identity (100.0% similar) in 147 aa overlap (1-147:1-147)
10 20 30 40 50 60
pF1KE1 MAGNSILLAAVSILSACQQSYFALQVGKARLKYKVTPPAVTGSPEFERVFRAQQNCVEFY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 MAGNSILLAAVSILSACQQSYFALQVGKARLKYKVTPPAVTGSPEFERVFRAQQNCVEFY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PIFIITLWMAGWYFNQVFATCLGLVYIYGRHLYFWGYSEAAKKRITGFRLSLGILALLTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 PIFIITLWMAGWYFNQVFATCLGLVYIYGRHLYFWGYSEAAKKRITGFRLSLGILALLTL
70 80 90 100 110 120
130 140
pF1KE1 LGALGIANSFLDEYLDLNIAKKLRRQF
:::::::::::::::::::::::::::
CCDS37 LGALGIANSFLDEYLDLNIAKKLRRQF
130 140
>>CCDS34316.1 LTC4S gene_id:4056|Hs108|chr5 (150 aa)
initn: 407 init1: 407 opt: 409 Z-score: 577.6 bits: 112.9 E(32554): 7.5e-26
Smith-Waterman score: 409; 45.1% identity (70.8% similar) in 144 aa overlap (1-144:1-144)
10 20 30 40 50 60
pF1KE1 MAGNSILLAAVSILSACQQSYFALQVGKARLKYKVTPPAVTGSPEFERVFRAQQNCVEFY
: . :::::..:.. :.::.::: .:: ..:.:: .:: ::::::.::: :: :..
CCDS34 MKDEVALLAAVTLLGVLLQAYFSLQVISARRAFRVSPPLTTGPPEFERVYRAQVNCSEYF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PIFIITLWMAGWYFNQVFATCLGLVYIYGRHLYFWGYSEAAKKRITGFRLSLGILALLTL
:.:. :::.:: .:.. :. ::::...: :: ::...:. :.. . : : ::.
CCDS34 PLFLATLWVAGIFFHEGAAALCGLVYLFARLRYFQGYARSAQLRLAPLYASARALWLLVA
70 80 90 100 110 120
130 140
pF1KE1 LGALGIANSFLDEYLDLNIAKKLRRQF
:.:::. :: : . .::
CCDS34 LAALGLLAHFLPAALRAALLGRLRTLLPWA
130 140 150
>>CCDS56339.1 MGST2 gene_id:4258|Hs108|chr4 (77 aa)
initn: 329 init1: 329 opt: 329 Z-score: 470.5 bits: 92.1 E(32554): 6.9e-20
Smith-Waterman score: 329; 98.1% identity (100.0% similar) in 53 aa overlap (1-53:1-53)
10 20 30 40 50 60
pF1KE1 MAGNSILLAAVSILSACQQSYFALQVGKARLKYKVTPPAVTGSPEFERVFRAQQNCVEFY
::::::::::::::::::::::::::::::::::::::::::::::::::::.
CCDS56 MAGNSILLAAVSILSACQQSYFALQVGKARLKYKVTPPAVTGSPEFERVFRAHFCYLSGS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PIFIITLWMAGWYFNQVFATCLGLVYIYGRHLYFWGYSEAAKKRITGFRLSLGILALLTL
CCDS56 GVHIWPSPILLGIFRSC
70
>>CCDS9337.1 ALOX5AP gene_id:241|Hs108|chr13 (161 aa)
initn: 288 init1: 276 opt: 276 Z-score: 391.6 bits: 78.6 E(32554): 1.7e-15
Smith-Waterman score: 276; 37.2% identity (62.8% similar) in 129 aa overlap (3-131:7-135)
10 20 30 40 50
pF1KE1 MAGNSILLAAVSILSACQQSYFALQVGKARLKYKVTPPAVTGSPEFERVFRAQQNC
:: .::: :...:. :...:: .: . . ::. ::::. :.:::
CCDS93 MDQETVGNVVLLAIVTLISVVQNGFFAHKVEHESRTQNGRSFQRTGTLAFERVYTANQNC
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 VEFYPIFIITLWMAGWYFNQVFATCLGLVYIYGRHLYFWGYSEAAKKRITGFRLSLGILA
:. :: :. .:: :: .:: :. ::.:.. :. :: :: . :. .. :.
CCDS93 VDAYPTFLAVLWSAGLLCSQVPAAFAGLMYLFVRQKYFVGYLGERTQSTPGYIFGKRIIL
70 80 90 100 110 120
120 130 140
pF1KE1 LLTLLGALGIANSFLDEYLDLNIAKKLRRQF
.: :... :: : .:
CCDS93 FLFLMSVAGIFNYYLIFFFGSDFENYIKTISTTISPLLLIP
130 140 150 160
>>CCDS73558.1 ALOX5AP gene_id:241|Hs108|chr13 (218 aa)
initn: 276 init1: 276 opt: 276 Z-score: 389.6 bits: 78.6 E(32554): 2.2e-15
Smith-Waterman score: 276; 37.2% identity (62.8% similar) in 129 aa overlap (3-131:64-192)
10 20 30
pF1KE1 MAGNSILLAAVSILSACQQSYFALQVGKARLK
:: .::: :...:. :...:: .: .
CCDS73 ISHQCWAGCAAGGRAVLSGEPEANMDQETVGNVVLLAIVTLISVVQNGFFAHKVEHESRT
40 50 60 70 80 90
40 50 60 70 80 90
pF1KE1 YKVTPPAVTGSPEFERVFRAQQNCVEFYPIFIITLWMAGWYFNQVFATCLGLVYIYGRHL
. ::. ::::. :.::::. :: :. .:: :: .:: :. ::.:.. :.
CCDS73 QNGRSFQRTGTLAFERVYTANQNCVDAYPTFLAVLWSAGLLCSQVPAAFAGLMYLFVRQK
100 110 120 130 140 150
100 110 120 130 140
pF1KE1 YFWGYSEAAKKRITGFRLSLGILALLTLLGALGIANSFLDEYLDLNIAKKLRRQF
:: :: . :. .. :. .: :... :: : .:
CCDS73 YFVGYLGERTQSTPGYIFGKRIILFLFLMSVAGIFNYYLIFFFGSDFENYIKTISTTISP
160 170 180 190 200 210
CCDS73 LLLIP
147 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 15:30:01 2016 done: Mon Nov 7 15:30:01 2016
Total Scan time: 1.600 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]