FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5225, 250 aa 1>>>pF1KE5225 250 - 250 aa - 250 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.6307+/-0.00033; mu= 6.9711+/- 0.021 mean_var=175.1575+/-34.290, 0's: 0 Z-trim(121.7): 6 B-trim: 0 in 0/57 Lambda= 0.096908 statistics sampled from 38744 (38750) to 38744 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.771), E-opt: 0.2 (0.454), width: 16 Scan time: 5.480 The best scores are: opt bits E(85289) NP_001019195 (OMIM: 128230,233910,600225) GTP cycl ( 250) 1673 244.9 9.8e-65 NP_000152 (OMIM: 128230,233910,600225) GTP cyclohy ( 250) 1673 244.9 9.8e-65 NP_001019241 (OMIM: 128230,233910,600225) GTP cycl ( 233) 1413 208.6 8.2e-54 NP_001019242 (OMIM: 128230,233910,600225) GTP cycl ( 213) 1407 207.7 1.4e-53 XP_016876707 (OMIM: 128230,233910,600225) PREDICTE ( 152) 875 133.2 2.6e-31 >>NP_001019195 (OMIM: 128230,233910,600225) GTP cyclohyd (250 aa) initn: 1673 init1: 1673 opt: 1673 Z-score: 1283.1 bits: 244.9 E(85289): 9.8e-65 Smith-Waterman score: 1673; 100.0% identity (100.0% similar) in 250 aa overlap (1-250:1-250) 10 20 30 40 50 60 pF1KE5 MEKGPVRAPAEKPRGARCSNGFPERDPPRPGPSRPAEKPPRPEAKSAQPADGWKGERPRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MEKGPVRAPAEKPRGARCSNGFPERDPPRPGPSRPAEKPPRPEAKSAQPADGWKGERPRS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 EEDNELNLPNLAAAYSSILSSLGENPQRQGLLKTPWRAASAMQFFTKGYQETISDVLNDA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EEDNELNLPNLAAAYSSILSSLGENPQRQGLLKTPWRAASAMQFFTKGYQETISDVLNDA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 IFDEDHDEMVIVKDIDMFSMCEHHLVPFVGKVHIGYLPNKQVLGLSKLARIVEIYSRRLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IFDEDHDEMVIVKDIDMFSMCEHHLVPFVGKVHIGYLPNKQVLGLSKLARIVEIYSRRLQ 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 VQERLTKQIAVAITEALRPAGVGVVVEATHMCMVMRGVQKMNSKTVTSTMLGVFREDPKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VQERLTKQIAVAITEALRPAGVGVVVEATHMCMVMRGVQKMNSKTVTSTMLGVFREDPKT 190 200 210 220 230 240 250 pF1KE5 REEFLTLIRS :::::::::: NP_001 REEFLTLIRS 250 >>NP_000152 (OMIM: 128230,233910,600225) GTP cyclohydrol (250 aa) initn: 1673 init1: 1673 opt: 1673 Z-score: 1283.1 bits: 244.9 E(85289): 9.8e-65 Smith-Waterman score: 1673; 100.0% identity (100.0% similar) in 250 aa overlap (1-250:1-250) 10 20 30 40 50 60 pF1KE5 MEKGPVRAPAEKPRGARCSNGFPERDPPRPGPSRPAEKPPRPEAKSAQPADGWKGERPRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 MEKGPVRAPAEKPRGARCSNGFPERDPPRPGPSRPAEKPPRPEAKSAQPADGWKGERPRS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 EEDNELNLPNLAAAYSSILSSLGENPQRQGLLKTPWRAASAMQFFTKGYQETISDVLNDA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 EEDNELNLPNLAAAYSSILSSLGENPQRQGLLKTPWRAASAMQFFTKGYQETISDVLNDA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 IFDEDHDEMVIVKDIDMFSMCEHHLVPFVGKVHIGYLPNKQVLGLSKLARIVEIYSRRLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 IFDEDHDEMVIVKDIDMFSMCEHHLVPFVGKVHIGYLPNKQVLGLSKLARIVEIYSRRLQ 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 VQERLTKQIAVAITEALRPAGVGVVVEATHMCMVMRGVQKMNSKTVTSTMLGVFREDPKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 VQERLTKQIAVAITEALRPAGVGVVVEATHMCMVMRGVQKMNSKTVTSTMLGVFREDPKT 190 200 210 220 230 240 250 pF1KE5 REEFLTLIRS :::::::::: NP_000 REEFLTLIRS 250 >>NP_001019241 (OMIM: 128230,233910,600225) GTP cyclohyd (233 aa) initn: 1407 init1: 1407 opt: 1413 Z-score: 1087.1 bits: 208.6 E(85289): 8.2e-54 Smith-Waterman score: 1413; 94.6% identity (96.9% similar) in 223 aa overlap (1-223:1-223) 10 20 30 40 50 60 pF1KE5 MEKGPVRAPAEKPRGARCSNGFPERDPPRPGPSRPAEKPPRPEAKSAQPADGWKGERPRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MEKGPVRAPAEKPRGARCSNGFPERDPPRPGPSRPAEKPPRPEAKSAQPADGWKGERPRS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 EEDNELNLPNLAAAYSSILSSLGENPQRQGLLKTPWRAASAMQFFTKGYQETISDVLNDA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EEDNELNLPNLAAAYSSILSSLGENPQRQGLLKTPWRAASAMQFFTKGYQETISDVLNDA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 IFDEDHDEMVIVKDIDMFSMCEHHLVPFVGKVHIGYLPNKQVLGLSKLARIVEIYSRRLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IFDEDHDEMVIVKDIDMFSMCEHHLVPFVGKVHIGYLPNKQVLGLSKLARIVEIYSRRLQ 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 VQERLTKQIAVAITEALRPAGVGVVVEATHMCMVMRGVQKMNSKTVTSTMLGVFREDPKT :::::::::::::::::::::::::::::. .:.. . : NP_001 VQERLTKQIAVAITEALRPAGVGVVVEATKSNKYNKGLSPLLSSCHLFVAILK 190 200 210 220 230 250 pF1KE5 REEFLTLIRS >>NP_001019242 (OMIM: 128230,233910,600225) GTP cyclohyd (213 aa) initn: 1407 init1: 1407 opt: 1407 Z-score: 1083.1 bits: 207.7 E(85289): 1.4e-53 Smith-Waterman score: 1407; 100.0% identity (100.0% similar) in 209 aa overlap (1-209:1-209) 10 20 30 40 50 60 pF1KE5 MEKGPVRAPAEKPRGARCSNGFPERDPPRPGPSRPAEKPPRPEAKSAQPADGWKGERPRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MEKGPVRAPAEKPRGARCSNGFPERDPPRPGPSRPAEKPPRPEAKSAQPADGWKGERPRS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 EEDNELNLPNLAAAYSSILSSLGENPQRQGLLKTPWRAASAMQFFTKGYQETISDVLNDA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EEDNELNLPNLAAAYSSILSSLGENPQRQGLLKTPWRAASAMQFFTKGYQETISDVLNDA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 IFDEDHDEMVIVKDIDMFSMCEHHLVPFVGKVHIGYLPNKQVLGLSKLARIVEIYSRRLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IFDEDHDEMVIVKDIDMFSMCEHHLVPFVGKVHIGYLPNKQVLGLSKLARIVEIYSRRLQ 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 VQERLTKQIAVAITEALRPAGVGVVVEATHMCMVMRGVQKMNSKTVTSTMLGVFREDPKT ::::::::::::::::::::::::::::: NP_001 VQERLTKQIAVAITEALRPAGVGVVVEATSAEP 190 200 210 >>XP_016876707 (OMIM: 128230,233910,600225) PREDICTED: G (152 aa) initn: 875 init1: 875 opt: 875 Z-score: 683.1 bits: 133.2 E(85289): 2.6e-31 Smith-Waterman score: 875; 100.0% identity (100.0% similar) in 136 aa overlap (115-250:17-152) 90 100 110 120 130 140 pF1KE5 NPQRQGLLKTPWRAASAMQFFTKGYQETISDVLNDAIFDEDHDEMVIVKDIDMFSMCEHH :::::::::::::::::::::::::::::: XP_016 MFGFMLILAKFSKFCLDVLNDAIFDEDHDEMVIVKDIDMFSMCEHH 10 20 30 40 150 160 170 180 190 200 pF1KE5 LVPFVGKVHIGYLPNKQVLGLSKLARIVEIYSRRLQVQERLTKQIAVAITEALRPAGVGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LVPFVGKVHIGYLPNKQVLGLSKLARIVEIYSRRLQVQERLTKQIAVAITEALRPAGVGV 50 60 70 80 90 100 210 220 230 240 250 pF1KE5 VVEATHMCMVMRGVQKMNSKTVTSTMLGVFREDPKTREEFLTLIRS :::::::::::::::::::::::::::::::::::::::::::::: XP_016 VVEATHMCMVMRGVQKMNSKTVTSTMLGVFREDPKTREEFLTLIRS 110 120 130 140 150 250 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 22:40:32 2016 done: Mon Nov 7 22:40:33 2016 Total Scan time: 5.480 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]