FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3592, 248 aa 1>>>pF1KE3592 248 - 248 aa - 248 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.9811+/-0.000275; mu= 5.5259+/- 0.017 mean_var=182.6028+/-35.733, 0's: 0 Z-trim(125.2): 7 B-trim: 86 in 1/61 Lambda= 0.094912 statistics sampled from 48394 (48407) to 48394 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.83), E-opt: 0.2 (0.568), width: 16 Scan time: 8.150 The best scores are: opt bits E(85289) NP_653274 (OMIM: 607885) CKLF-like MARVEL transmem ( 248) 1718 246.0 4.6e-65 NP_001186246 (OMIM: 607885) CKLF-like MARVEL trans ( 195) 695 105.9 5.6e-23 NP_443725 (OMIM: 607884) CKLF-like MARVEL transmem ( 286) 223 41.4 0.0021 >>NP_653274 (OMIM: 607885) CKLF-like MARVEL transmembran (248 aa) initn: 1718 init1: 1718 opt: 1718 Z-score: 1289.1 bits: 246.0 E(85289): 4.6e-65 Smith-Waterman score: 1718; 100.0% identity (100.0% similar) in 248 aa overlap (1-248:1-248) 10 20 30 40 50 60 pF1KE3 MAPKAAKGAKPEPAPAPPPPGAKPEEDKKDGKEPSDKPQKAVQDHKEPSDKPQKAVQPKH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_653 MAPKAAKGAKPEPAPAPPPPGAKPEEDKKDGKEPSDKPQKAVQDHKEPSDKPQKAVQPKH 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 EVGTRRGCRRYRWELKDSNKEFWLLGHAEIKIRSLGCLIAAMILLSSLTVHPILRLIITM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_653 EVGTRRGCRRYRWELKDSNKEFWLLGHAEIKIRSLGCLIAAMILLSSLTVHPILRLIITM 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 EISFFSFFILLYSFAIHRYIPFILWPISDLFNDLIACAFLVGAVVFAVRSRRSMNLHYLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_653 EISFFSFFILLYSFAIHRYIPFILWPISDLFNDLIACAFLVGAVVFAVRSRRSMNLHYLL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 AVILIGAAGVFAFIDVCLQRNHFRGKKAKKHMLVPPPGKEKGPQQGKGPEPAKPPEPGKP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_653 AVILIGAAGVFAFIDVCLQRNHFRGKKAKKHMLVPPPGKEKGPQQGKGPEPAKPPEPGKP 190 200 210 220 230 240 pF1KE3 PGPAKGKK :::::::: NP_653 PGPAKGKK >>NP_001186246 (OMIM: 607885) CKLF-like MARVEL transmemb (195 aa) initn: 1360 init1: 695 opt: 695 Z-score: 533.5 bits: 105.9 E(85289): 5.6e-23 Smith-Waterman score: 1258; 78.6% identity (78.6% similar) in 248 aa overlap (1-248:1-195) 10 20 30 40 50 60 pF1KE3 MAPKAAKGAKPEPAPAPPPPGAKPEEDKKDGKEPSDKPQKAVQDHKEPSDKPQKAVQPKH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MAPKAAKGAKPEPAPAPPPPGAKPEEDKKDGKEPSDKPQKAVQDHKEPSDKPQKAVQPKH 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 EVGTRRGCRRYRWELKDSNKEFWLLGHAEIKIRSLGCLIAAMILLSSLTVHPILRLIITM ::::::::::::::::::::::::::::::::::: NP_001 EVGTRRGCRRYRWELKDSNKEFWLLGHAEIKIRSL------------------------- 70 80 90 130 140 150 160 170 180 pF1KE3 EISFFSFFILLYSFAIHRYIPFILWPISDLFNDLIACAFLVGAVVFAVRSRRSMNLHYLL :::::::::::::::::::::::::::::::: NP_001 ----------------------------DLFNDLIACAFLVGAVVFAVRSRRSMNLHYLL 100 110 120 190 200 210 220 230 240 pF1KE3 AVILIGAAGVFAFIDVCLQRNHFRGKKAKKHMLVPPPGKEKGPQQGKGPEPAKPPEPGKP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 AVILIGAAGVFAFIDVCLQRNHFRGKKAKKHMLVPPPGKEKGPQQGKGPEPAKPPEPGKP 130 140 150 160 170 180 pF1KE3 PGPAKGKK :::::::: NP_001 PGPAKGKK 190 >>NP_443725 (OMIM: 607884) CKLF-like MARVEL transmembran (286 aa) initn: 204 init1: 152 opt: 223 Z-score: 181.9 bits: 41.4 E(85289): 0.0021 Smith-Waterman score: 231; 23.3% identity (55.3% similar) in 253 aa overlap (3-234:38-285) 10 20 pF1KE3 MAPKAAKGAKPEPAPAPPPP--------GAKP ::: .. . . :: : .: NP_443 PESSEAPSGNLKQPETAAALASSGSVVSSVPKAQRNISAKTAPRKHPAVSIRSAQSAAAA 10 20 30 40 50 60 30 40 50 60 70 pF1KE3 EEDKKDGKEPSDK-----PQKAVQDHKEPSDKPQKAVQPKHEVGTR-RGCRRYRWELKDS . . ..: :: : : : . :: . .. . . . : .: . ....:: NP_443 RPQGSEGTAPSRKATTRPPPKPTLPPPTPSAHTESKLLNEMAIKERVEGRAKVPYKFRDS 70 80 90 100 110 120 80 90 100 110 120 130 pF1KE3 NKEFWLLGHAEIKIRSLGCLIAAMILLSSLTVHPILRLIITMEISFFSFFILLYSFAIHR :.: . . .:: :. ...:. . .. . : ..:: . ::::.: ...:. NP_443 LKRFSFSPTGMLKILRLSLILGALACFIITQANESFITITSLEICIVVFFILIYVLTLHH 130 140 150 160 170 180 140 150 160 170 180 190 pF1KE3 YIPFILWPISDLFNDLIACAFLVGAVVFAVRSRRSMNLHYLLAVILIGAAGVF---AFID . .. ::. :: :..:. .:: ....:.. .. .: :. . . . :. : ::. NP_443 LLTYLHWPLLDLTNSIITAVFLSVVAILAMQEKKRRHLLYVGGSLCLTAVIVCCIDAFVV 190 200 210 220 230 240 200 210 220 230 240 pF1KE3 VCLQRNH---FRGKKAKKHMLVPPPGKEKGPQQGKGPE-PAKPPEPGKPPGPAKGKK . .:.. : : ...... :.:. :. : :. : .: NP_443 TTKMRTNLKRFLGVEVERKL---SPAKDAYPETG--PDAPQRPA 250 260 270 280 248 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 00:33:33 2016 done: Mon Nov 7 00:33:34 2016 Total Scan time: 8.150 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]