FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3592, 248 aa 1>>>pF1KE3592 248 - 248 aa - 248 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.7251+/-0.00069; mu= 7.1260+/- 0.042 mean_var=176.8918+/-34.942, 0's: 0 Z-trim(117.7): 15 B-trim: 2 in 1/53 Lambda= 0.096432 statistics sampled from 18529 (18542) to 18529 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.834), E-opt: 0.2 (0.57), width: 16 Scan time: 2.740 The best scores are: opt bits E(32554) CCDS10814.1 CMTM2 gene_id:146225|Hs108|chr16 ( 248) 1718 249.6 1.4e-66 CCDS56001.1 CMTM2 gene_id:146225|Hs108|chr16 ( 195) 695 107.2 8.2e-24 >>CCDS10814.1 CMTM2 gene_id:146225|Hs108|chr16 (248 aa) initn: 1718 init1: 1718 opt: 1718 Z-score: 1308.7 bits: 249.6 E(32554): 1.4e-66 Smith-Waterman score: 1718; 100.0% identity (100.0% similar) in 248 aa overlap (1-248:1-248) 10 20 30 40 50 60 pF1KE3 MAPKAAKGAKPEPAPAPPPPGAKPEEDKKDGKEPSDKPQKAVQDHKEPSDKPQKAVQPKH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 MAPKAAKGAKPEPAPAPPPPGAKPEEDKKDGKEPSDKPQKAVQDHKEPSDKPQKAVQPKH 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 EVGTRRGCRRYRWELKDSNKEFWLLGHAEIKIRSLGCLIAAMILLSSLTVHPILRLIITM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 EVGTRRGCRRYRWELKDSNKEFWLLGHAEIKIRSLGCLIAAMILLSSLTVHPILRLIITM 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 EISFFSFFILLYSFAIHRYIPFILWPISDLFNDLIACAFLVGAVVFAVRSRRSMNLHYLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 EISFFSFFILLYSFAIHRYIPFILWPISDLFNDLIACAFLVGAVVFAVRSRRSMNLHYLL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 AVILIGAAGVFAFIDVCLQRNHFRGKKAKKHMLVPPPGKEKGPQQGKGPEPAKPPEPGKP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 AVILIGAAGVFAFIDVCLQRNHFRGKKAKKHMLVPPPGKEKGPQQGKGPEPAKPPEPGKP 190 200 210 220 230 240 pF1KE3 PGPAKGKK :::::::: CCDS10 PGPAKGKK >>CCDS56001.1 CMTM2 gene_id:146225|Hs108|chr16 (195 aa) initn: 1360 init1: 695 opt: 695 Z-score: 541.0 bits: 107.2 E(32554): 8.2e-24 Smith-Waterman score: 1258; 78.6% identity (78.6% similar) in 248 aa overlap (1-248:1-195) 10 20 30 40 50 60 pF1KE3 MAPKAAKGAKPEPAPAPPPPGAKPEEDKKDGKEPSDKPQKAVQDHKEPSDKPQKAVQPKH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 MAPKAAKGAKPEPAPAPPPPGAKPEEDKKDGKEPSDKPQKAVQDHKEPSDKPQKAVQPKH 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 EVGTRRGCRRYRWELKDSNKEFWLLGHAEIKIRSLGCLIAAMILLSSLTVHPILRLIITM ::::::::::::::::::::::::::::::::::: CCDS56 EVGTRRGCRRYRWELKDSNKEFWLLGHAEIKIRSL------------------------- 70 80 90 130 140 150 160 170 180 pF1KE3 EISFFSFFILLYSFAIHRYIPFILWPISDLFNDLIACAFLVGAVVFAVRSRRSMNLHYLL :::::::::::::::::::::::::::::::: CCDS56 ----------------------------DLFNDLIACAFLVGAVVFAVRSRRSMNLHYLL 100 110 120 190 200 210 220 230 240 pF1KE3 AVILIGAAGVFAFIDVCLQRNHFRGKKAKKHMLVPPPGKEKGPQQGKGPEPAKPPEPGKP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 AVILIGAAGVFAFIDVCLQRNHFRGKKAKKHMLVPPPGKEKGPQQGKGPEPAKPPEPGKP 130 140 150 160 170 180 pF1KE3 PGPAKGKK :::::::: CCDS56 PGPAKGKK 190 248 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 00:33:32 2016 done: Mon Nov 7 00:33:33 2016 Total Scan time: 2.740 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]