FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1392, 93 aa 1>>>pF1KE1392 93 - 93 aa - 93 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.8489+/-0.000256; mu= 11.3373+/- 0.016 mean_var=52.4440+/-10.550, 0's: 0 Z-trim(119.5): 4 B-trim: 1915 in 1/55 Lambda= 0.177103 statistics sampled from 33633 (33637) to 33633 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.787), E-opt: 0.2 (0.394), width: 16 Scan time: 4.370 The best scores are: opt bits E(85289) NP_473364 (OMIM: 600807,606531) secretoglobin fami ( 93) 582 155.4 1.2e-38 NP_443095 (OMIM: 606500) secretoglobin family 3A m ( 104) 195 56.6 7.6e-09 >>NP_473364 (OMIM: 600807,606531) secretoglobin family 3 (93 aa) initn: 582 init1: 582 opt: 582 Z-score: 814.9 bits: 155.4 E(85289): 1.2e-38 Smith-Waterman score: 582; 100.0% identity (100.0% similar) in 93 aa overlap (1-93:1-93) 10 20 30 40 50 60 pF1KE1 MKLVTIFLLVTISLCSYSATAFLINKVPLPVDKLAPLPLDNILPFMDPLKLLLKTLGISV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_473 MKLVTIFLLVTISLCSYSATAFLINKVPLPVDKLAPLPLDNILPFMDPLKLLLKTLGISV 10 20 30 40 50 60 70 80 90 pF1KE1 EHLVEGLRKCVNELGPEASEAVKKLLEALSHLV ::::::::::::::::::::::::::::::::: NP_473 EHLVEGLRKCVNELGPEASEAVKKLLEALSHLV 70 80 90 >>NP_443095 (OMIM: 606500) secretoglobin family 3A membe (104 aa) initn: 231 init1: 165 opt: 195 Z-score: 279.8 bits: 56.6 E(85289): 7.6e-09 Smith-Waterman score: 208; 45.5% identity (63.4% similar) in 101 aa overlap (1-92:1-100) 10 20 30 40 50 pF1KE1 MKLVTIFLLVTISLCSYSATAFLINK---VPLPVDKLAPLP------LDNILPFMDPLKL :::.... : . :: ::.:::... : :: : : : : ..:::: NP_443 MKLAALLGLCVALSCS-SAAAFLVGSAKPVAQPVAALESAAEAGAGTLANPLGTLNPLKL 10 20 30 40 50 60 70 80 90 pF1KE1 LLKTLGISVEHLVEGLRKCVNELGPEASEAVKKLLEALSHLV ::..::: :.::.:: .::: ::::.: ::: : :. : NP_443 LLSSLGIPVNHLIEGSQKCVAELGPQAVGAVKALKALLGALTVFG 60 70 80 90 100 93 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 00:34:07 2016 done: Mon Nov 7 00:34:07 2016 Total Scan time: 4.370 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]