FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4512, 540 aa 1>>>pF1KE4512 540 - 540 aa - 540 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 9.8067+/-0.000897; mu= -1.4918+/- 0.054 mean_var=258.9895+/-51.494, 0's: 0 Z-trim(115.3): 9 B-trim: 0 in 0/52 Lambda= 0.079695 statistics sampled from 15899 (15906) to 15899 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.801), E-opt: 0.2 (0.489), width: 16 Scan time: 3.710 The best scores are: opt bits E(32554) CCDS953.1 ECM1 gene_id:1893|Hs108|chr1 ( 540) 3915 463.2 3.4e-130 CCDS55632.1 ECM1 gene_id:1893|Hs108|chr1 ( 567) 3426 407.0 3e-113 CCDS954.1 ECM1 gene_id:1893|Hs108|chr1 ( 415) 1830 223.4 4e-58 >>CCDS953.1 ECM1 gene_id:1893|Hs108|chr1 (540 aa) initn: 3915 init1: 3915 opt: 3915 Z-score: 2450.9 bits: 463.2 E(32554): 3.4e-130 Smith-Waterman score: 3915; 99.6% identity (99.8% similar) in 540 aa overlap (1-540:1-540) 10 20 30 40 50 60 pF1KE4 MGTTARAALVLTYLAVASAASEGGFTATGQRQLRPEHFQEVGYAAPPSPPLSRSLPMDHP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS95 MGTTARAALVLTYLAVASAASEGGFTATGQRQLRPEHFQEVGYAAPPSPPLSRSLPMDHP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 DSSQHGPPFEGQSQVQPPPSQEATPLQQEKLLPAQLPAEKEVGPPLPQEAVPLQKELPSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS95 DSSQHGPPFEGQSQVQPPPSQEATPLQQEKLLPAQLPAEKEVGPPLPQEAVPLQKELPSL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 QHPNEQKEGMPAPFGDQSHPEPESWNAAQHCQQDRSQGGWGHRLDGFPPGRPSPDNLNQI ::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::: CCDS95 QHPNEQKEGTPAPFGDQSHPEPESWNAAQHCQQDRSQGGWGHRLDGFPPGRPSPDNLNQI 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 CLPNRQHVVYGPWNLPQSSYSHLTRQGETLNFLEIGYSRCCHCRSHTNRLECAKLVWEEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS95 CLPNRQHVVYGPWNLPQSSYSHLTRQGETLNFLEIGYSRCCHCRSHTNRLECAKLVWEEA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 MSRFCEAEFSVKTRPHWCCTRQGEARFSCFQEEAPQPHYQLRACPSHQPDISSGLELPFP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS95 MSRFCEAEFSVKTRPHWCCTRQGEARFSCFQEEAPQPHYQLRACPSHQPDISSGLELPFP 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE4 PGVPTLDNIKNICHLRRFRSVPRNLPATDPLQRELLALIQLEREFQRCCRQGNNHTCTWK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS95 PGVPTLDNIKNICHLRRFRSVPRNLPATDPLQRELLALIQLEREFQRCCRQGNNHTCTWK 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE4 AWEDTLDKYCDREYAVKTHHHLCCRHPPSPTRDECFARRAPYPNYDRDILTIDISRVTPN ::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::: CCDS95 AWEDTLDKYCDREYAVKTHHHLCCRHPPSPTRDECFARRAPYPNYDRDILTIDIGRVTPN 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE4 LMGHLCGNQRVLTKHKHIPGLIHNMTARCCDLPFPEQACCAEEEKLTFINDLCGPRRNIW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS95 LMGHLCGNQRVLTKHKHIPGLIHNMTARCCDLPFPEQACCAEEEKLTFINDLCGPRRNIW 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE4 RDPALCCYLSPGDEQVNCFNINYLRNVALVSGDTENAKGQGEQGSTGGTNISSTSEPKEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS95 RDPALCCYLSPGDEQVNCFNINYLRNVALVSGDTENAKGQGEQGSTGGTNISSTSEPKEE 490 500 510 520 530 540 >>CCDS55632.1 ECM1 gene_id:1893|Hs108|chr1 (567 aa) initn: 3417 init1: 3417 opt: 3426 Z-score: 2146.7 bits: 407.0 E(32554): 3e-113 Smith-Waterman score: 3842; 94.7% identity (94.9% similar) in 567 aa overlap (1-540:1-567) 10 20 30 40 50 60 pF1KE4 MGTTARAALVLTYLAVASAASEGGFTATGQRQLRPEHFQEVGYAAPPSPPLSRSLPMDHP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 MGTTARAALVLTYLAVASAASEGGFTATGQRQLRPEHFQEVGYAAPPSPPLSRSLPMDHP 10 20 30 40 50 60 70 80 90 pF1KE4 DSSQHGPPFEGQSQ---------------------------VQPPPSQEATPLQQEKLLP ::::::::::::: ::::::::::::::::::: CCDS55 DSSQHGPPFEGQSGKEGRGPRPHSQPWLGERVGCSHIPPSIVQPPPSQEATPLQQEKLLP 70 80 90 100 110 120 100 110 120 130 140 150 pF1KE4 AQLPAEKEVGPPLPQEAVPLQKELPSLQHPNEQKEGMPAPFGDQSHPEPESWNAAQHCQQ :::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::: CCDS55 AQLPAEKEVGPPLPQEAVPLQKELPSLQHPNEQKEGTPAPFGDQSHPEPESWNAAQHCQQ 130 140 150 160 170 180 160 170 180 190 200 210 pF1KE4 DRSQGGWGHRLDGFPPGRPSPDNLNQICLPNRQHVVYGPWNLPQSSYSHLTRQGETLNFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 DRSQGGWGHRLDGFPPGRPSPDNLNQICLPNRQHVVYGPWNLPQSSYSHLTRQGETLNFL 190 200 210 220 230 240 220 230 240 250 260 270 pF1KE4 EIGYSRCCHCRSHTNRLECAKLVWEEAMSRFCEAEFSVKTRPHWCCTRQGEARFSCFQEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 EIGYSRCCHCRSHTNRLECAKLVWEEAMSRFCEAEFSVKTRPHWCCTRQGEARFSCFQEE 250 260 270 280 290 300 280 290 300 310 320 330 pF1KE4 APQPHYQLRACPSHQPDISSGLELPFPPGVPTLDNIKNICHLRRFRSVPRNLPATDPLQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 APQPHYQLRACPSHQPDISSGLELPFPPGVPTLDNIKNICHLRRFRSVPRNLPATDPLQR 310 320 330 340 350 360 340 350 360 370 380 390 pF1KE4 ELLALIQLEREFQRCCRQGNNHTCTWKAWEDTLDKYCDREYAVKTHHHLCCRHPPSPTRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 ELLALIQLEREFQRCCRQGNNHTCTWKAWEDTLDKYCDREYAVKTHHHLCCRHPPSPTRD 370 380 390 400 410 420 400 410 420 430 440 450 pF1KE4 ECFARRAPYPNYDRDILTIDISRVTPNLMGHLCGNQRVLTKHKHIPGLIHNMTARCCDLP :::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::: CCDS55 ECFARRAPYPNYDRDILTIDIGRVTPNLMGHLCGNQRVLTKHKHIPGLIHNMTARCCDLP 430 440 450 460 470 480 460 470 480 490 500 510 pF1KE4 FPEQACCAEEEKLTFINDLCGPRRNIWRDPALCCYLSPGDEQVNCFNINYLRNVALVSGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 FPEQACCAEEEKLTFINDLCGPRRNIWRDPALCCYLSPGDEQVNCFNINYLRNVALVSGD 490 500 510 520 530 540 520 530 540 pF1KE4 TENAKGQGEQGSTGGTNISSTSEPKEE ::::::::::::::::::::::::::: CCDS55 TENAKGQGEQGSTGGTNISSTSEPKEE 550 560 >>CCDS954.1 ECM1 gene_id:1893|Hs108|chr1 (415 aa) initn: 1829 init1: 1791 opt: 1830 Z-score: 1156.9 bits: 223.4 E(32554): 4e-58 Smith-Waterman score: 2728; 76.5% identity (76.7% similar) in 540 aa overlap (1-540:1-415) 10 20 30 40 50 60 pF1KE4 MGTTARAALVLTYLAVASAASEGGFTATGQRQLRPEHFQEVGYAAPPSPPLSRSLPMDHP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS95 MGTTARAALVLTYLAVASAASEGGFTATGQRQLRPEHFQEVGYAAPPSPPLSRSLPMDHP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 DSSQHGPPFEGQSQVQPPPSQEATPLQQEKLLPAQLPAEKEVGPPLPQEAVPLQKELPSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS95 DSSQHGPPFEGQSQVQPPPSQEATPLQQEKLLPAQLPAEKEVGPPLPQEAVPLQKELPSL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 QHPNEQKEGMPAPFGDQSHPEPESWNAAQHCQQDRSQGGWGHRLDGFPPGRPSPDNLNQI ::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::: CCDS95 QHPNEQKEGTPAPFGDQSHPEPESWNAAQHCQQDRSQGGWGHRLDGFPPGRPSPDNLNQI 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 CLPNRQHVVYGPWNLPQSSYSHLTRQGETLNFLEIGYSRCCHCRSHTNRLECAKLVWEEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS95 CLPNRQHVVYGPWNLPQSSYSHLTRQGETLNFLEIGYSRCCHCRSHTNRLECAKLVWE-- 190 200 210 220 230 250 260 270 280 290 300 pF1KE4 MSRFCEAEFSVKTRPHWCCTRQGEARFSCFQEEAPQPHYQLRACPSHQPDISSGLELPFP CCDS95 ------------------------------------------------------------ 310 320 330 340 350 360 pF1KE4 PGVPTLDNIKNICHLRRFRSVPRNLPATDPLQRELLALIQLEREFQRCCRQGNNHTCTWK CCDS95 ------------------------------------------------------------ 370 380 390 400 410 420 pF1KE4 AWEDTLDKYCDREYAVKTHHHLCCRHPPSPTRDECFARRAPYPNYDRDILTIDISRVTPN :::::::::::::::::::::::::::::::::::::::::::::::::::.::::: CCDS95 ---DTLDKYCDREYAVKTHHHLCCRHPPSPTRDECFARRAPYPNYDRDILTIDIGRVTPN 240 250 260 270 280 290 430 440 450 460 470 480 pF1KE4 LMGHLCGNQRVLTKHKHIPGLIHNMTARCCDLPFPEQACCAEEEKLTFINDLCGPRRNIW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS95 LMGHLCGNQRVLTKHKHIPGLIHNMTARCCDLPFPEQACCAEEEKLTFINDLCGPRRNIW 300 310 320 330 340 350 490 500 510 520 530 540 pF1KE4 RDPALCCYLSPGDEQVNCFNINYLRNVALVSGDTENAKGQGEQGSTGGTNISSTSEPKEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS95 RDPALCCYLSPGDEQVNCFNINYLRNVALVSGDTENAKGQGEQGSTGGTNISSTSEPKEE 360 370 380 390 400 410 540 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 00:20:35 2016 done: Sun Nov 6 00:20:35 2016 Total Scan time: 3.710 Total Display time: 0.040 Function used was FASTA [36.3.4 Apr, 2011]