Result of FASTA (omim) for
pFN21AE4560
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4560, 685 aa
1>>>pF1KE4560 685 - 685 aa - 685 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1696+/-0.000487; mu= 20.4088+/- 0.030
mean_var=64.9178+/-13.245, 0's: 0 Z-trim(107.7): 33 B-trim: 785 in 2/49
Lambda= 0.159181
statistics sampled from 15778 (15801) to 15778 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.535), E-opt: 0.2 (0.185), width: 16
Scan time: 10.370
The best scores are: opt bits E(85289)
NP_000332 (OMIM: 104614,220100) neutral and basic ( 685) 4657 1079.1 0
XP_011531349 (OMIM: 104614,220100) PREDICTED: neut ( 564) 3698 858.9 0
NP_001013269 (OMIM: 158070) 4F2 cell-surface antig ( 529) 153 44.7 0.0011
NP_001012682 (OMIM: 158070) 4F2 cell-surface antig ( 568) 153 44.8 0.0011
NP_002385 (OMIM: 158070) 4F2 cell-surface antigen ( 630) 153 44.8 0.0012
NP_001012680 (OMIM: 158070) 4F2 cell-surface antig ( 631) 153 44.8 0.0012
>>NP_000332 (OMIM: 104614,220100) neutral and basic amin (685 aa)
initn: 4657 init1: 4657 opt: 4657 Z-score: 5775.9 bits: 1079.1 E(85289): 0
Smith-Waterman score: 4657; 99.9% identity (100.0% similar) in 685 aa overlap (1-685:1-685)
10 20 30 40 50 60
pF1KE4 MAEDKSKRDSIEMSMKGCQTNNGFVHNEDILEQTPDPGSSTDNLKHSTRGILGSQEPDFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MAEDKSKRDSIEMSMKGCQTNNGFVHNEDILEQTPDPGSSTDNLKHSTRGILGSQEPDFK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 GVQPYAGMPKEVLFQFSGQARYRIPREILFWLTVASVLVLIAATIAIIALSPKCLDWWQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 GVQPYAGMPKEVLFQFSGQARYRIPREILFWLTVASVLVLIAATIAIIALSPKCLDWWQE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 GPMYQIYPRSFKDSNKDGNGDLKGIQDKLDYITALNIKTVWITSFYKSSLKDFRYGVEDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 GPMYQIYPRSFKDSNKDGNGDLKGIQDKLDYITALNIKTVWITSFYKSSLKDFRYGVEDF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 REVDPIFGTMEDFENLVAAIHDKGLKLIIDFIPNHTSDKHIWFQLSRTRTGKYTDYYIWH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 REVDPIFGTMEDFENLVAAIHDKGLKLIIDFIPNHTSDKHIWFQLSRTRTGKYTDYYIWH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 DCTHENGKTIPPNNWLSVYGNSSWHFDEVRNQCYFHQFMKEQPDLNFRNPDVQEEIKEIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 DCTHENGKTIPPNNWLSVYGNSSWHFDEVRNQCYFHQFMKEQPDLNFRNPDVQEEIKEIL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 RFWLTKGVDGFSLDAVKFLLEAKHLRDEIQVNKTQIPDTVTQYSELYHDFTTTQVGMHDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 RFWLTKGVDGFSLDAVKFLLEAKHLRDEIQVNKTQIPDTVTQYSELYHDFTTTQVGMHDI
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE4 VRSFRQTMDQYSTEPGRYRFMGTEAYAESIDRTVMYYGLPFIQEADFPFNNYLSMLDTVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 VRSFRQTMDQYSTEPGRYRFMGTEAYAESIDRTVMYYGLPFIQEADFPFNNYLSMLDTVS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE4 GNSVYEVITSWMENMPEGKWPNWMIGGPDSSRLTSRLGNQYVNVMNMLLFTLPGTPITYY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 GNSVYEVITSWMENMPEGKWPNWMIGGPDSSRLTSRLGNQYVNVMNMLLFTLPGTPITYY
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE4 GEEIGMGNIVAANLNESYDINTLRSKSPMQWDNSSNAGFSEASNTWLPTNSDYHTVNVDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 GEEIGMGNIVAANLNESYDINTLRSKSPMQWDNSSNAGFSEASNTWLPTNSDYHTVNVDV
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE4 QKTQPRSALKLYQDLSLLHANELLLNRGWFCHLRNDSHYVVYTRELDGIDRIFIVVLNFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 QKTQPRSALKLYQDLSLLHANELLLNRGWFCHLRNDSHYVVYTRELDGIDRIFIVVLNFG
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE4 ESTLLNLHNMISGLPAKIRIRLSTNSADKGSKVDTSGIFLDKGEGLIFEHNTKNLLHRQT
:::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::
NP_000 ESTLLNLHNMISGLPAKMRIRLSTNSADKGSKVDTSGIFLDKGEGLIFEHNTKNLLHRQT
610 620 630 640 650 660
670 680
pF1KE4 AFRDRCFVSNRACYSSVLNILYTSC
:::::::::::::::::::::::::
NP_000 AFRDRCFVSNRACYSSVLNILYTSC
670 680
>>XP_011531349 (OMIM: 104614,220100) PREDICTED: neutral (564 aa)
initn: 3698 init1: 3698 opt: 3698 Z-score: 4586.9 bits: 858.9 E(85289): 0
Smith-Waterman score: 3698; 100.0% identity (100.0% similar) in 539 aa overlap (1-539:1-539)
10 20 30 40 50 60
pF1KE4 MAEDKSKRDSIEMSMKGCQTNNGFVHNEDILEQTPDPGSSTDNLKHSTRGILGSQEPDFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAEDKSKRDSIEMSMKGCQTNNGFVHNEDILEQTPDPGSSTDNLKHSTRGILGSQEPDFK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 GVQPYAGMPKEVLFQFSGQARYRIPREILFWLTVASVLVLIAATIAIIALSPKCLDWWQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GVQPYAGMPKEVLFQFSGQARYRIPREILFWLTVASVLVLIAATIAIIALSPKCLDWWQE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 GPMYQIYPRSFKDSNKDGNGDLKGIQDKLDYITALNIKTVWITSFYKSSLKDFRYGVEDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GPMYQIYPRSFKDSNKDGNGDLKGIQDKLDYITALNIKTVWITSFYKSSLKDFRYGVEDF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 REVDPIFGTMEDFENLVAAIHDKGLKLIIDFIPNHTSDKHIWFQLSRTRTGKYTDYYIWH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 REVDPIFGTMEDFENLVAAIHDKGLKLIIDFIPNHTSDKHIWFQLSRTRTGKYTDYYIWH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 DCTHENGKTIPPNNWLSVYGNSSWHFDEVRNQCYFHQFMKEQPDLNFRNPDVQEEIKEIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DCTHENGKTIPPNNWLSVYGNSSWHFDEVRNQCYFHQFMKEQPDLNFRNPDVQEEIKEIL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 RFWLTKGVDGFSLDAVKFLLEAKHLRDEIQVNKTQIPDTVTQYSELYHDFTTTQVGMHDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RFWLTKGVDGFSLDAVKFLLEAKHLRDEIQVNKTQIPDTVTQYSELYHDFTTTQVGMHDI
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE4 VRSFRQTMDQYSTEPGRYRFMGTEAYAESIDRTVMYYGLPFIQEADFPFNNYLSMLDTVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VRSFRQTMDQYSTEPGRYRFMGTEAYAESIDRTVMYYGLPFIQEADFPFNNYLSMLDTVS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE4 GNSVYEVITSWMENMPEGKWPNWMIGGPDSSRLTSRLGNQYVNVMNMLLFTLPGTPITYY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GNSVYEVITSWMENMPEGKWPNWMIGGPDSSRLTSRLGNQYVNVMNMLLFTLPGTPITYY
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE4 GEEIGMGNIVAANLNESYDINTLRSKSPMQWDNSSNAGFSEASNTWLPTNSDYHTVNVDV
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GEEIGMGNIVAANLNESYDINTLRSKSPMQWDNSSNAGFSEASNTWLPTNSDYHTVNVDS
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE4 QKTQPRSALKLYQDLSLLHANELLLNRGWFCHLRNDSHYVVYTRELDGIDRIFIVVLNFG
XP_011 CSVTHARVQWRDLGTLQPLLPGFK
550 560
>>NP_001013269 (OMIM: 158070) 4F2 cell-surface antigen h (529 aa)
initn: 339 init1: 123 opt: 153 Z-score: 187.5 bits: 44.7 E(85289): 0.0011
Smith-Waterman score: 420; 24.8% identity (50.8% similar) in 608 aa overlap (56-648:51-523)
30 40 50 60 70 80
pF1KE4 HNEDILEQTPDPGSSTDNLKHSTRGILGSQEPDFKGVQPYAGMPKEVLFQFSGQ---ARY
: . .. ..:. :: :.. .:. .:
NP_001 KQPMNAASGAAMSLAGAEKNGLVKIKVAEDEAEAAAAAKFTGLSKEELLKVAGSPGWVRT
30 40 50 60 70 80
90 100 110 120 130
pF1KE4 RIPREILFWLTVASVLVLIAATIAIIALSPKCLD-----WWQEGPMYQIYPRSFKDSNKD
: .:::: . : ..:....::. .:.: . ::. : .:.: ... .
NP_001 RWALLLLFWL---GWLGMLAGAVVIIVRAPRCRELPAQKWWHTGALYRI--GDLQAFQGH
90 100 110 120 130
140 150 160 170 180 190
pF1KE4 GNGDLKGIQDKLDYITALNIKTVWITSFYKSSLKDFRYGVEDFREVDPIFGTMEDFENLV
: :.: :.. .:::...:..: . . ..:.. : . :. ..:: ::. :::..:.
NP_001 GAGNLAGLKGRLDYLSSLKVKGLVLGPIHKNQKDD--VAQTDLLQIDPNFGSKEDFDSLL
140 150 160 170 180 190
200 210 220 230 240 250
pF1KE4 AAIHDKGLKLIIDFIPNHTSDKHIWFQLSRTRTGKYTDYYIWHDCTHENGKTIPPNNWLS
. . :....:.:. ::. .. :.:.:
NP_001 QSAKKKSIRVILDLTPNYRGE----------------------------------NSWFS
200 210
260 270 280 290 300 310
pF1KE4 VYGNSSWHFDEVRNQCYFHQFMKEQPDLNFRNPDVQEEIKEILRFWLTKGVDGFSLDAVK
. : : : ..:. :.::: :::::.. ..
NP_001 T-----------------------QVDT------VATKVKDALEFWLQAGVDGFQVRDIE
220 230 240 250
320 330 340 350 360 370
pF1KE4 FLLEAKHLRDEIQVNKTQIPDTVTQYSELYHDFTTTQVGMHDIVRSFRQTMDQYSTEPGR
: .:. . : : .:...: . :
NP_001 NLKDASSFLAEWQ----------------------------NITKGFSED---------R
260 270
380 390 400 410 420 430
pF1KE4 YRFMGTEAYAESIDRTVMYYGLPFIQEADFPFNNYLSMLDTVS-GNSVYEVITSWMENMP
. ::. : : . : .. . ..::: :. : :. . ..:... :
NP_001 LLIAGTN----SSDLQQILSLLESNKDLLLT-SSYLS--DSGSTGEHTKSLVTQYL-NAT
280 290 300 310 320
440 450 460 470 480 490
pF1KE4 EGKWPNWMIGGPDSSRLTSRLGNQYVNVMNMLLFTLPGTPITYYGEEIGMGNIVAANLNE
..: .: .. .. ::: : : . .....::::::::. ::.:::. .:: ..
NP_001 GNRWCSWSLS--QARLLTSFLPAQLLRLYQLMLFTLPGTPVFSYGDEIGLD--AAALPGQ
330 340 350 360 370 380
500 510 520 530 540 550
pF1KE4 SYDINTLRSKSPMQWDNSSNAGFSEASNTWLPTNSDYHTVNVDVQKTQPRSALKLYQDLS
.. . : ::.:: : . .: . . ..: :. .: : :.:.. ::
NP_001 PMEAPV------MLWDESS---FPD-----IPGAVSAN-MTVKGQSEDPGSLLSLFRRLS
390 400 410 420
560 570 580 590 600 610
pF1KE4 LLHANELLLNRGWFCHLRNDSHYVVYTRELDGIDRIFIVVLNFGESTL---LNLHNMISG
...: : .: : . : :. : .: :.::::::. : :. .. ..
NP_001 DQRSKERSLLHGDFHAFSAGPGLFSYIRHWDQNER-FLVVLNFGDVGLSAGLQASDLPAS
430 440 450 460 470 480
620 630 640 650 660 670
pF1KE4 --LPAKIRIRLSTNSA-DKGSKVDTSGIFLDKGEGLIFEHNTKNLLHRQTAFRDRCFVSN
:::: . :::. . ..:: .. . :. :::..
NP_001 ASLPAKADLLLSTQPGREEGSPLELERLKLEPHEGLLLRFPYAA
490 500 510 520
680
pF1KE4 RACYSSVLNILYTSC
>>NP_001012682 (OMIM: 158070) 4F2 cell-surface antigen h (568 aa)
initn: 339 init1: 123 opt: 153 Z-score: 187.0 bits: 44.8 E(85289): 0.0011
Smith-Waterman score: 420; 24.8% identity (50.8% similar) in 608 aa overlap (56-648:90-562)
30 40 50 60 70 80
pF1KE4 HNEDILEQTPDPGSSTDNLKHSTRGILGSQEPDFKGVQPYAGMPKEVLFQFSGQ---ARY
: . .. ..:. :: :.. .:. .:
NP_001 KQPMNAASGAAMSLAGAEKNGLVKIKVAEDEAEAAAAAKFTGLSKEELLKVAGSPGWVRT
60 70 80 90 100 110
90 100 110 120 130
pF1KE4 RIPREILFWLTVASVLVLIAATIAIIALSPKCLD-----WWQEGPMYQIYPRSFKDSNKD
: .:::: . : ..:....::. .:.: . ::. : .:.: ... .
NP_001 RWALLLLFWL---GWLGMLAGAVVIIVRAPRCRELPAQKWWHTGALYRI--GDLQAFQGH
120 130 140 150 160 170
140 150 160 170 180 190
pF1KE4 GNGDLKGIQDKLDYITALNIKTVWITSFYKSSLKDFRYGVEDFREVDPIFGTMEDFENLV
: :.: :.. .:::...:..: . . ..:.. : . :. ..:: ::. :::..:.
NP_001 GAGNLAGLKGRLDYLSSLKVKGLVLGPIHKNQKDD--VAQTDLLQIDPNFGSKEDFDSLL
180 190 200 210 220 230
200 210 220 230 240 250
pF1KE4 AAIHDKGLKLIIDFIPNHTSDKHIWFQLSRTRTGKYTDYYIWHDCTHENGKTIPPNNWLS
. . :....:.:. ::. .. :.:.:
NP_001 QSAKKKSIRVILDLTPNYRGE----------------------------------NSWFS
240 250
260 270 280 290 300 310
pF1KE4 VYGNSSWHFDEVRNQCYFHQFMKEQPDLNFRNPDVQEEIKEILRFWLTKGVDGFSLDAVK
. : : : ..:. :.::: :::::.. ..
NP_001 T-----------------------QVDT------VATKVKDALEFWLQAGVDGFQVRDIE
260 270 280
320 330 340 350 360 370
pF1KE4 FLLEAKHLRDEIQVNKTQIPDTVTQYSELYHDFTTTQVGMHDIVRSFRQTMDQYSTEPGR
: .:. . : : .:...: . :
NP_001 NLKDASSFLAEWQ----------------------------NITKGFSED---------R
290 300 310
380 390 400 410 420 430
pF1KE4 YRFMGTEAYAESIDRTVMYYGLPFIQEADFPFNNYLSMLDTVS-GNSVYEVITSWMENMP
. ::. : : . : .. . ..::: :. : :. . ..:... :
NP_001 LLIAGTN----SSDLQQILSLLESNKDLLLT-SSYLS--DSGSTGEHTKSLVTQYL-NAT
320 330 340 350 360
440 450 460 470 480 490
pF1KE4 EGKWPNWMIGGPDSSRLTSRLGNQYVNVMNMLLFTLPGTPITYYGEEIGMGNIVAANLNE
..: .: .. .. ::: : : . .....::::::::. ::.:::. .:: ..
NP_001 GNRWCSWSLS--QARLLTSFLPAQLLRLYQLMLFTLPGTPVFSYGDEIGLD--AAALPGQ
370 380 390 400 410 420
500 510 520 530 540 550
pF1KE4 SYDINTLRSKSPMQWDNSSNAGFSEASNTWLPTNSDYHTVNVDVQKTQPRSALKLYQDLS
.. . : ::.:: : . .: . . ..: :. .: : :.:.. ::
NP_001 PMEAPV------MLWDESS---FPD-----IPGAVSAN-MTVKGQSEDPGSLLSLFRRLS
430 440 450 460
560 570 580 590 600 610
pF1KE4 LLHANELLLNRGWFCHLRNDSHYVVYTRELDGIDRIFIVVLNFGESTL---LNLHNMISG
...: : .: : . : :. : .: :.::::::. : :. .. ..
NP_001 DQRSKERSLLHGDFHAFSAGPGLFSYIRHWDQNER-FLVVLNFGDVGLSAGLQASDLPAS
470 480 490 500 510 520
620 630 640 650 660 670
pF1KE4 --LPAKIRIRLSTNSA-DKGSKVDTSGIFLDKGEGLIFEHNTKNLLHRQTAFRDRCFVSN
:::: . :::. . ..:: .. . :. :::..
NP_001 ASLPAKADLLLSTQPGREEGSPLELERLKLEPHEGLLLRFPYAA
530 540 550 560
680
pF1KE4 RACYSSVLNILYTSC
>>NP_002385 (OMIM: 158070) 4F2 cell-surface antigen heav (630 aa)
initn: 339 init1: 123 opt: 153 Z-score: 186.4 bits: 44.8 E(85289): 0.0012
Smith-Waterman score: 420; 24.8% identity (50.8% similar) in 608 aa overlap (56-648:152-624)
30 40 50 60 70 80
pF1KE4 HNEDILEQTPDPGSSTDNLKHSTRGILGSQEPDFKGVQPYAGMPKEVLFQFSGQ---ARY
: . .. ..:. :: :.. .:. .:
NP_002 KQPMNAASGAAMSLAGAEKNGLVKIKVAEDEAEAAAAAKFTGLSKEELLKVAGSPGWVRT
130 140 150 160 170 180
90 100 110 120 130
pF1KE4 RIPREILFWLTVASVLVLIAATIAIIALSPKCLD-----WWQEGPMYQIYPRSFKDSNKD
: .:::: . : ..:....::. .:.: . ::. : .:.: ... .
NP_002 RWALLLLFWL---GWLGMLAGAVVIIVRAPRCRELPAQKWWHTGALYRI--GDLQAFQGH
190 200 210 220 230
140 150 160 170 180 190
pF1KE4 GNGDLKGIQDKLDYITALNIKTVWITSFYKSSLKDFRYGVEDFREVDPIFGTMEDFENLV
: :.: :.. .:::...:..: . . ..:.. : . :. ..:: ::. :::..:.
NP_002 GAGNLAGLKGRLDYLSSLKVKGLVLGPIHKNQKDD--VAQTDLLQIDPNFGSKEDFDSLL
240 250 260 270 280 290
200 210 220 230 240 250
pF1KE4 AAIHDKGLKLIIDFIPNHTSDKHIWFQLSRTRTGKYTDYYIWHDCTHENGKTIPPNNWLS
. . :....:.:. ::. .. :.:.:
NP_002 QSAKKKSIRVILDLTPNYRGE----------------------------------NSWFS
300 310 320
260 270 280 290 300 310
pF1KE4 VYGNSSWHFDEVRNQCYFHQFMKEQPDLNFRNPDVQEEIKEILRFWLTKGVDGFSLDAVK
. : : : ..:. :.::: :::::.. ..
NP_002 T-----------------------QVDT------VATKVKDALEFWLQAGVDGFQVRDIE
330 340 350
320 330 340 350 360 370
pF1KE4 FLLEAKHLRDEIQVNKTQIPDTVTQYSELYHDFTTTQVGMHDIVRSFRQTMDQYSTEPGR
: .:. . : : .:...: . :
NP_002 NLKDASSFLAEWQ----------------------------NITKGFSED---------R
360 370
380 390 400 410 420 430
pF1KE4 YRFMGTEAYAESIDRTVMYYGLPFIQEADFPFNNYLSMLDTVS-GNSVYEVITSWMENMP
. ::. : : . : .. . ..::: :. : :. . ..:... :
NP_002 LLIAGTN----SSDLQQILSLLESNKDLLLT-SSYLS--DSGSTGEHTKSLVTQYL-NAT
380 390 400 410 420
440 450 460 470 480 490
pF1KE4 EGKWPNWMIGGPDSSRLTSRLGNQYVNVMNMLLFTLPGTPITYYGEEIGMGNIVAANLNE
..: .: .. .. ::: : : . .....::::::::. ::.:::. .:: ..
NP_002 GNRWCSWSLS--QARLLTSFLPAQLLRLYQLMLFTLPGTPVFSYGDEIGLD--AAALPGQ
430 440 450 460 470 480
500 510 520 530 540 550
pF1KE4 SYDINTLRSKSPMQWDNSSNAGFSEASNTWLPTNSDYHTVNVDVQKTQPRSALKLYQDLS
.. . : ::.:: : . .: . . ..: :. .: : :.:.. ::
NP_002 PMEAPV------MLWDESS---FPD-----IPGAVSAN-MTVKGQSEDPGSLLSLFRRLS
490 500 510 520
560 570 580 590 600 610
pF1KE4 LLHANELLLNRGWFCHLRNDSHYVVYTRELDGIDRIFIVVLNFGESTL---LNLHNMISG
...: : .: : . : :. : .: :.::::::. : :. .. ..
NP_002 DQRSKERSLLHGDFHAFSAGPGLFSYIRHWDQNER-FLVVLNFGDVGLSAGLQASDLPAS
530 540 550 560 570 580
620 630 640 650 660 670
pF1KE4 --LPAKIRIRLSTNSA-DKGSKVDTSGIFLDKGEGLIFEHNTKNLLHRQTAFRDRCFVSN
:::: . :::. . ..:: .. . :. :::..
NP_002 ASLPAKADLLLSTQPGREEGSPLELERLKLEPHEGLLLRFPYAA
590 600 610 620 630
680
pF1KE4 RACYSSVLNILYTSC
>>NP_001012680 (OMIM: 158070) 4F2 cell-surface antigen h (631 aa)
initn: 339 init1: 123 opt: 153 Z-score: 186.3 bits: 44.8 E(85289): 0.0012
Smith-Waterman score: 420; 24.8% identity (50.8% similar) in 608 aa overlap (56-648:153-625)
30 40 50 60 70 80
pF1KE4 HNEDILEQTPDPGSSTDNLKHSTRGILGSQEPDFKGVQPYAGMPKEVLFQFSGQ---ARY
: . .. ..:. :: :.. .:. .:
NP_001 KQPMNAASGAAMSLAGAEKNGLVKIKVAEDEAEAAAAAKFTGLSKEELLKVAGSPGWVRT
130 140 150 160 170 180
90 100 110 120 130
pF1KE4 RIPREILFWLTVASVLVLIAATIAIIALSPKCLD-----WWQEGPMYQIYPRSFKDSNKD
: .:::: . : ..:....::. .:.: . ::. : .:.: ... .
NP_001 RWALLLLFWL---GWLGMLAGAVVIIVRAPRCRELPAQKWWHTGALYRI--GDLQAFQGH
190 200 210 220 230
140 150 160 170 180 190
pF1KE4 GNGDLKGIQDKLDYITALNIKTVWITSFYKSSLKDFRYGVEDFREVDPIFGTMEDFENLV
: :.: :.. .:::...:..: . . ..:.. : . :. ..:: ::. :::..:.
NP_001 GAGNLAGLKGRLDYLSSLKVKGLVLGPIHKNQKDD--VAQTDLLQIDPNFGSKEDFDSLL
240 250 260 270 280 290
200 210 220 230 240 250
pF1KE4 AAIHDKGLKLIIDFIPNHTSDKHIWFQLSRTRTGKYTDYYIWHDCTHENGKTIPPNNWLS
. . :....:.:. ::. .. :.:.:
NP_001 QSAKKKSIRVILDLTPNYRGE----------------------------------NSWFS
300 310 320
260 270 280 290 300 310
pF1KE4 VYGNSSWHFDEVRNQCYFHQFMKEQPDLNFRNPDVQEEIKEILRFWLTKGVDGFSLDAVK
. : : : ..:. :.::: :::::.. ..
NP_001 T-----------------------QVDT------VATKVKDALEFWLQAGVDGFQVRDIE
330 340 350
320 330 340 350 360 370
pF1KE4 FLLEAKHLRDEIQVNKTQIPDTVTQYSELYHDFTTTQVGMHDIVRSFRQTMDQYSTEPGR
: .:. . : : .:...: . :
NP_001 NLKDASSFLAEWQ----------------------------NITKGFSED---------R
360 370
380 390 400 410 420 430
pF1KE4 YRFMGTEAYAESIDRTVMYYGLPFIQEADFPFNNYLSMLDTVS-GNSVYEVITSWMENMP
. ::. : : . : .. . ..::: :. : :. . ..:... :
NP_001 LLIAGTN----SSDLQQILSLLESNKDLLLT-SSYLS--DSGSTGEHTKSLVTQYL-NAT
380 390 400 410 420
440 450 460 470 480 490
pF1KE4 EGKWPNWMIGGPDSSRLTSRLGNQYVNVMNMLLFTLPGTPITYYGEEIGMGNIVAANLNE
..: .: .. .. ::: : : . .....::::::::. ::.:::. .:: ..
NP_001 GNRWCSWSLS--QARLLTSFLPAQLLRLYQLMLFTLPGTPVFSYGDEIGLD--AAALPGQ
430 440 450 460 470 480
500 510 520 530 540 550
pF1KE4 SYDINTLRSKSPMQWDNSSNAGFSEASNTWLPTNSDYHTVNVDVQKTQPRSALKLYQDLS
.. . : ::.:: : . .: . . ..: :. .: : :.:.. ::
NP_001 PMEAPV------MLWDESS---FPD-----IPGAVSAN-MTVKGQSEDPGSLLSLFRRLS
490 500 510 520
560 570 580 590 600 610
pF1KE4 LLHANELLLNRGWFCHLRNDSHYVVYTRELDGIDRIFIVVLNFGESTL---LNLHNMISG
...: : .: : . : :. : .: :.::::::. : :. .. ..
NP_001 DQRSKERSLLHGDFHAFSAGPGLFSYIRHWDQNER-FLVVLNFGDVGLSAGLQASDLPAS
530 540 550 560 570 580
620 630 640 650 660 670
pF1KE4 --LPAKIRIRLSTNSA-DKGSKVDTSGIFLDKGEGLIFEHNTKNLLHRQTAFRDRCFVSN
:::: . :::. . ..:: .. . :. :::..
NP_001 ASLPAKADLLLSTQPGREEGSPLELERLKLEPHEGLLLRFPYAA
590 600 610 620 630
680
pF1KE4 RACYSSVLNILYTSC
685 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 23:55:46 2016 done: Sat Nov 5 23:55:48 2016
Total Scan time: 10.370 Total Display time: 0.060
Function used was FASTA [36.3.4 Apr, 2011]