FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4560, 685 aa 1>>>pF1KE4560 685 - 685 aa - 685 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.5483+/-0.00123; mu= 17.9351+/- 0.074 mean_var=62.5653+/-12.473, 0's: 0 Z-trim(100.5): 25 B-trim: 39 in 1/48 Lambda= 0.162146 statistics sampled from 6120 (6131) to 6120 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.543), E-opt: 0.2 (0.188), width: 16 Scan time: 3.040 The best scores are: opt bits E(32554) CCDS1819.1 SLC3A1 gene_id:6519|Hs108|chr2 ( 685) 4657 1098.8 0 >>CCDS1819.1 SLC3A1 gene_id:6519|Hs108|chr2 (685 aa) initn: 4657 init1: 4657 opt: 4657 Z-score: 5882.2 bits: 1098.8 E(32554): 0 Smith-Waterman score: 4657; 99.9% identity (100.0% similar) in 685 aa overlap (1-685:1-685) 10 20 30 40 50 60 pF1KE4 MAEDKSKRDSIEMSMKGCQTNNGFVHNEDILEQTPDPGSSTDNLKHSTRGILGSQEPDFK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS18 MAEDKSKRDSIEMSMKGCQTNNGFVHNEDILEQTPDPGSSTDNLKHSTRGILGSQEPDFK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 GVQPYAGMPKEVLFQFSGQARYRIPREILFWLTVASVLVLIAATIAIIALSPKCLDWWQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS18 GVQPYAGMPKEVLFQFSGQARYRIPREILFWLTVASVLVLIAATIAIIALSPKCLDWWQE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 GPMYQIYPRSFKDSNKDGNGDLKGIQDKLDYITALNIKTVWITSFYKSSLKDFRYGVEDF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS18 GPMYQIYPRSFKDSNKDGNGDLKGIQDKLDYITALNIKTVWITSFYKSSLKDFRYGVEDF 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 REVDPIFGTMEDFENLVAAIHDKGLKLIIDFIPNHTSDKHIWFQLSRTRTGKYTDYYIWH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS18 REVDPIFGTMEDFENLVAAIHDKGLKLIIDFIPNHTSDKHIWFQLSRTRTGKYTDYYIWH 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 DCTHENGKTIPPNNWLSVYGNSSWHFDEVRNQCYFHQFMKEQPDLNFRNPDVQEEIKEIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS18 DCTHENGKTIPPNNWLSVYGNSSWHFDEVRNQCYFHQFMKEQPDLNFRNPDVQEEIKEIL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE4 RFWLTKGVDGFSLDAVKFLLEAKHLRDEIQVNKTQIPDTVTQYSELYHDFTTTQVGMHDI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS18 RFWLTKGVDGFSLDAVKFLLEAKHLRDEIQVNKTQIPDTVTQYSELYHDFTTTQVGMHDI 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE4 VRSFRQTMDQYSTEPGRYRFMGTEAYAESIDRTVMYYGLPFIQEADFPFNNYLSMLDTVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS18 VRSFRQTMDQYSTEPGRYRFMGTEAYAESIDRTVMYYGLPFIQEADFPFNNYLSMLDTVS 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE4 GNSVYEVITSWMENMPEGKWPNWMIGGPDSSRLTSRLGNQYVNVMNMLLFTLPGTPITYY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS18 GNSVYEVITSWMENMPEGKWPNWMIGGPDSSRLTSRLGNQYVNVMNMLLFTLPGTPITYY 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE4 GEEIGMGNIVAANLNESYDINTLRSKSPMQWDNSSNAGFSEASNTWLPTNSDYHTVNVDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS18 GEEIGMGNIVAANLNESYDINTLRSKSPMQWDNSSNAGFSEASNTWLPTNSDYHTVNVDV 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE4 QKTQPRSALKLYQDLSLLHANELLLNRGWFCHLRNDSHYVVYTRELDGIDRIFIVVLNFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS18 QKTQPRSALKLYQDLSLLHANELLLNRGWFCHLRNDSHYVVYTRELDGIDRIFIVVLNFG 550 560 570 580 590 600 610 620 630 640 650 660 pF1KE4 ESTLLNLHNMISGLPAKIRIRLSTNSADKGSKVDTSGIFLDKGEGLIFEHNTKNLLHRQT :::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::: CCDS18 ESTLLNLHNMISGLPAKMRIRLSTNSADKGSKVDTSGIFLDKGEGLIFEHNTKNLLHRQT 610 620 630 640 650 660 670 680 pF1KE4 AFRDRCFVSNRACYSSVLNILYTSC ::::::::::::::::::::::::: CCDS18 AFRDRCFVSNRACYSSVLNILYTSC 670 680 685 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 23:55:46 2016 done: Sat Nov 5 23:55:46 2016 Total Scan time: 3.040 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]