(Circular) (Six-base) MAPSORT of: pFN21AE1336.seq Check: 1469 from: 1 to: 5455 pFN21AE1336 5455 bp With 182 enzymes: SgfI * August 16, 2010 14:45 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 2328 2328 Size: 5455 AatII G_ACGT'C Cuts at: 278 331 414 600 1536 2061 3265 278 Size: 53 83 186 936 525 1204 2468 Fragments arranged by size: 2468 1204 936 525 186 83 53 AccI GT'mk_AC Cuts at: 1937 2798 1937 Size: 861 4594 Acc65I G'GTAC_C Cuts at: 2776 2776 Size: 5455 AclI AA'CG_TT Cuts at: 1563 3582 3955 1563 Size: 2019 373 3063 Fragments arranged by size: 3063 2019 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2186 3518 4902 5170 1632 Size: 554 1332 1384 268 1917 Fragments arranged by size: 1917 1384 1332 554 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5258 AflIII A'CryG_T Cuts at: 1203 4354 5331 1203 Size: 3151 977 1327 Fragments arranged by size: 3151 1327 977 AgeI A'CCGG_T Cuts at: 4286 4286 Size: 5455 AhdI GACnn_n'nnGTC Cuts at: 4184 4184 Size: 5455 AleI CACnn'nnGTG Cuts at: 1166 2297 1166 Size: 1131 4324 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5455 AlwNI CAG_nnn'CTG Cuts at: 3198 4770 3198 Size: 1572 3883 ApaI G_GGCC'C Cuts at: 2163 2163 Size: 5455 ApaLI G'TGCA_C Cuts at: 3512 4668 3512 Size: 1156 4299 ApoI r'AATT_y Cuts at: 1493 2378 2764 2990 3142 5251 1493 Size: 885 386 226 152 2109 1697 Fragments arranged by size: 2109 1697 885 386 226 152 AseI AT'TA_AT Cuts at: 160 1032 4009 160 Size: 872 2977 1606 Fragments arranged by size: 2977 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5455 AvaI C'yCGr_G Cuts at: 1870 1943 2780 1870 Size: 73 837 4545 Fragments arranged by size: 4545 837 73 BamHI G'GATC_C Cuts at: 2785 3152 2785 Size: 367 5088 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2299 2776 4231 618 Size: 325 217 627 512 477 1455 1842 Fragments arranged by size: 1842 1455 627 512 477 325 217 BanII G_rGCy'C Cuts at: 1391 2163 2253 2774 1391 Size: 772 90 521 4072 Fragments arranged by size: 4072 772 521 90 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 928 Size: 971 4484 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3646 3680 1903 Size: 34 1709 34 3678 Fragments arranged by size: 3678 1709 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3347 4557 3347 Size: 1210 4245 BclI T'GATC_A Cuts at: 1548 1548 Size: 5455 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 4066 136 Size: 107 122 71 631 605 2394 1525 Fragments arranged by size: 2394 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5450 5450 Size: 5455 BlpI GC'TnA_GC Cuts at: 2872 2872 Size: 5455 Bme1580I G_kGCm'C Cuts at: 1790 2163 2304 2622 3516 4672 1790 Size: 373 141 318 894 1156 2573 Fragments arranged by size: 2573 1156 894 373 318 141 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5455 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 3186 4144 442 Size: 416 53 83 399 24 1769 958 1753 Fragments arranged by size: 1769 1753 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 2429 1056 Size: 1373 4082 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2582 4115 1239 Size: 1343 1533 2579 Fragments arranged by size: 2579 1533 1343 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3580 4445 4743 3580 Size: 865 298 4292 Fragments arranged by size: 4292 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 4118 882 Size: 617 2619 2219 Fragments arranged by size: 2619 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 3246 493 Size: 711 2042 2702 Fragments arranged by size: 2702 2042 711 BsaBI GATnn'nnATC Cuts at: 5449 5449 Size: 5455 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 2058 2081 3262 3644 Size: 53 83 186 936 525 23 1181 382 Cuts at: 3644 4279 275 Size: 635 1451 Fragments arranged by size: 1451 1181 936 635 525 382 186 83 53 23 BsaWI w'CCGG_w Cuts at: 3888 4286 4560 4707 5118 3888 Size: 398 274 147 411 4225 Fragments arranged by size: 4225 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 2336 2366 1178 Size: 30 165 30 933 30 4267 Fragments arranged by size: 4267 933 165 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2384 1186 Size: 1198 4257 BseYI C'CCAG_C Cuts at: 2580 2661 4658 5154 2580 Size: 81 1997 496 2881 Fragments arranged by size: 2881 1997 496 81 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 2096 1163 Size: 573 360 4522 Fragments arranged by size: 4522 573 360 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2905 3666 4694 1540 Size: 275 186 904 761 1028 2301 Fragments arranged by size: 2301 1028 904 761 275 186 BsiHKAI G_wGCw'C Cuts at: 2253 3516 3601 4672 2253 Size: 1263 85 1071 3036 Fragments arranged by size: 3036 1263 1071 85 BsmI GAATG_Cn' Cuts at: 2966 3059 2966 Size: 93 5362 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2163 2253 2304 2622 2774 3516 3601 Size: 399 373 90 51 318 152 742 85 Cuts at: 3601 4672 1391 Size: 1071 2174 Fragments arranged by size: 2174 1071 742 399 373 318 152 90 85 51 BspEI T'CCGG_A Cuts at: 5118 5118 Size: 5455 BspHI T'CATG_A Cuts at: 3344 5074 3344 Size: 1730 3725 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2160 2328 2810 844 Size: 1316 168 482 3489 Fragments arranged by size: 3489 1316 482 168 BsrBI CCG'CTC Cuts at: 1394 1823 3342 1394 Size: 429 1519 3507 Fragments arranged by size: 3507 1519 429 BsrDI GCAATG_nn' Cuts at: 65 1248 2547 3950 4124 65 Size: 1183 1299 1403 174 1396 Fragments arranged by size: 1403 1396 1299 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 4099 4286 1700 Size: 110 2289 187 2869 Fragments arranged by size: 2869 2289 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5455 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5455 BssSI C'ACGA_G Cuts at: 2609 3515 4527 2609 Size: 906 1012 3537 Fragments arranged by size: 3537 1012 906 BstAPI GCAn_nnn'nTGC Cuts at: 794 2566 794 Size: 1772 3683 BstBI TT'CG_AA Cuts at: 4259 4259 Size: 5455 BstEII G'GTnAC_C Cuts at: 1184 2626 1184 Size: 1442 4013 BstYI r'GATC_y Cuts at: 1972 2280 2785 3152 3537 3554 5006 5092 5104 Size: 308 505 367 385 17 1452 86 12 Cuts at: 5104 5450 1972 Size: 346 1977 Fragments arranged by size: 1977 1452 505 385 367 346 308 86 17 12 Bsu36I CC'TnA_GG Cuts at: 2735 2735 Size: 5455 BtgI C'CryG_G Cuts at: 513 1065 2064 2551 513 Size: 552 999 487 3417 Fragments arranged by size: 3417 999 552 487 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4716 Fragments arranged by size: 4716 683 56 BtsI GCAGTG_nn' Cuts at: 2971 3765 3785 2971 Size: 794 20 4641 Fragments arranged by size: 4641 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5455 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5420 DraI TTT'AAA Cuts at: 2759 2759 Size: 5455 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4462 809 Size: 507 3146 1802 Fragments arranged by size: 3146 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2902 3791 5420 Size: 54 1425 50 275 18 1072 889 1629 Cuts at: 5420 8 Size: 43 Fragments arranged by size: 1629 1425 1072 889 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2902 1537 Size: 275 1090 4090 Fragments arranged by size: 4090 1090 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2258 2361 2448 3385 1353 Size: 905 103 87 937 3423 Fragments arranged by size: 3423 937 905 103 87 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 4042 4416 4562 387 Size: 1064 138 2453 374 146 1280 Fragments arranged by size: 2453 1280 1064 374 146 138 EcoICRI GAG'CTC Cuts at: 2251 2251 Size: 5455 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2186 2582 3518 4115 4902 5170 1239 Size: 393 554 396 936 597 787 268 1524 Fragments arranged by size: 1524 936 787 597 554 396 393 268 EcoO109I rG'GnC_Cy Cuts at: 2159 2160 2159 Size: 1 5454 EcoRI G'AATT_C Cuts at: 2764 3142 2764 Size: 378 5077 FspI TGC'GCA Cuts at: 3961 3961 Size: 5455 HaeII r_GCGC'y Cuts at: 1678 4602 1678 Size: 2924 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2128 2160 2578 2610 4096 Size: 32 135 32 556 32 418 32 1486 Cuts at: 4096 4128 4170 4202 1373 Size: 32 42 32 2626 Fragments arranged by size: 2626 1486 556 418 135 42 32 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2128 2799 3045 669 Size: 988 281 190 671 246 3079 Fragments arranged by size: 3079 988 671 281 246 190 HindIII A'AGCT_T Cuts at: 748 748 Size: 5455 HpaI GTT'AAC Cuts at: 2128 3045 2128 Size: 917 4538 KpnI G_GTAC'C Cuts at: 2780 2780 Size: 5455 MfeI C'AATT_G Cuts at: 3054 3054 Size: 5455 MluI A'CGCG_T Cuts at: 5331 5331 Size: 5455 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 2385 4569 4753 1305 Size: 1080 2184 184 2007 Fragments arranged by size: 2184 2007 1080 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 3633 Fragments arranged by size: 3633 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2297 2528 2613 3413 3772 3931 518 Size: 648 1131 231 85 800 359 159 2042 Fragments arranged by size: 2042 1131 800 648 359 231 159 85 MspA1I CmG'CkG Cuts at: 1606 2041 2553 2584 2871 3548 4696 4941 1606 Size: 435 512 31 287 677 1148 245 2120 Fragments arranged by size: 2120 1148 677 512 435 287 245 31 NcoI C'CATG_G Cuts at: 513 1065 513 Size: 552 4903 NdeI CA'TA_TG Cuts at: 387 387 Size: 5455 NheI G'CTAG_C Cuts at: 1052 2425 1052 Size: 1373 4082 NotI GC'GGCC_GC Cuts at: 2902 2902 Size: 5455 NspI r_CATG'y Cuts at: 1132 1229 2560 2813 4358 1132 Size: 97 1331 253 1545 2229 Fragments arranged by size: 2229 1545 1331 253 97 PasI CC'CwG_GG Cuts at: 1348 2507 2622 1348 Size: 1159 115 4181 Fragments arranged by size: 4181 1159 115 PciI A'CATG_T Cuts at: 4354 4354 Size: 5455 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5455 PfoI T'CCnGG_A Cuts at: 2244 2244 Size: 5455 PmeI GTTT'AAAC Cuts at: 2759 2759 Size: 5455 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3524 3556 5037 5069 3524 Size: 32 1481 32 3910 Fragments arranged by size: 3910 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 2441 1613 Size: 828 4627 PsiI TTA'TAA Cuts at: 3025 3025 Size: 5455 PspOMI G'GGCC_C Cuts at: 2159 2159 Size: 5455 PstI C_TGCA'G Cuts at: 830 2496 2807 830 Size: 1666 311 3478 Fragments arranged by size: 3478 1666 311 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5455 SacI G_AGCT'C Cuts at: 2253 2253 Size: 5455 SacII CC_GC'GG Cuts at: 2554 2554 Size: 5455 SalI G'TCGA_C Cuts at: 1936 2797 1936 Size: 861 4594 SapI GCTCTTCn'nnn_ Cuts at: 2258 2258 Size: 5455 SbfI CC_TGCA'GG Cuts at: 2807 2807 Size: 5455 ScaI AGT'ACT Cuts at: 3703 5415 3703 Size: 1712 3743 SfcI C'TryA_G Cuts at: 826 1045 2492 2803 3938 4619 4810 826 Size: 219 1447 311 1135 681 191 1471 Fragments arranged by size: 1471 1447 1135 681 311 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5455 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5455 SmaI CCC'GGG Cuts at: 1872 2782 1872 Size: 910 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 3559 4460 4722 820 Size: 197 926 1616 901 262 1553 Fragments arranged by size: 1616 1553 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 3246 493 Size: 2753 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5455 SphI G_CATG'C Cuts at: 1132 2560 2813 1132 Size: 1428 253 3774 Fragments arranged by size: 3774 1428 253 SspI AAT'ATT Cuts at: 5 52 3379 5 Size: 47 3327 2081 Fragments arranged by size: 3327 2081 47 StuI AGG'CCT Cuts at: 1517 2396 1517 Size: 879 4576 StyI C'CwwG_G Cuts at: 513 1065 2646 2894 513 Size: 552 1581 248 3074 Fragments arranged by size: 3074 1581 552 248 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 3482 3499 3652 3837 4282 325 Size: 1255 1902 17 153 185 445 1498 Fragments arranged by size: 1902 1498 1255 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3701 5413 96 Size: 274 80 33 51 1443 1724 1712 138 Fragments arranged by size: 1724 1712 1443 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 2336 2368 5415 5447 2336 Size: 32 3047 32 2344 Fragments arranged by size: 3047 2344 32 32 Tth111I GACn'n_nGTC Cuts at: 1316 2011 1316 Size: 695 4760 XbaI T'CTAG_A Cuts at: 2791 2791 Size: 5455 XcmI CCAnnnn_n'nnnnTGG Cuts at: 2446 2446 Size: 5455 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5455 XmaI C'CCGG_G Cuts at: 1870 2780 1870 Size: 910 4545 XmnI GAAnn'nnTTC Cuts at: 3584 3584 Size: 5455 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 2059 3263 276 Size: 53 83 186 936 525 1204 2468 Fragments arranged by size: 2468 1204 936 525 186 83 53 Enzymes that do cut: AarI AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI Bsu36I BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoO109I EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PfoI PmeI PpiI PshAI PsiI PspOMI PstI PvuI SacI SacII SalI SapI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AfeI AloI AscI AvrII BaeI BbeI BbvCI BfrBI BplI Bpu10I BsiWI BsmBI BstXI BstZ17I DraIII EcoNI EcoRV FalI FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PmlI PpuMI PspXI PsrI PvuII RsrII SanDI SexAI SfiI SfoI SrfI SwaI