FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1336, 250 aa 1>>>pF1KE1336 250 - 250 aa - 250 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.5457+/-0.000317; mu= 13.2412+/- 0.020 mean_var=65.6880+/-13.038, 0's: 0 Z-trim(117.0): 9 B-trim: 0 in 0/50 Lambda= 0.158245 statistics sampled from 28569 (28571) to 28569 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.72), E-opt: 0.2 (0.335), width: 16 Scan time: 7.120 The best scores are: opt bits E(85289) NP_006323 (OMIM: 604664) gamma-interferon-inducibl ( 250) 1719 400.8 1.2e-111 >>NP_006323 (OMIM: 604664) gamma-interferon-inducible ly (250 aa) initn: 1719 init1: 1719 opt: 1719 Z-score: 2125.4 bits: 400.8 E(85289): 1.2e-111 Smith-Waterman score: 1719; 100.0% identity (100.0% similar) in 250 aa overlap (1-250:1-250) 10 20 30 40 50 60 pF1KE1 MTLSPLLLFLPPLLLLLDVPTAAVQASPLQALDFFGNGPPVNYKTGNLYLRGPLKKSNAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 MTLSPLLLFLPPLLLLLDVPTAAVQASPLQALDFFGNGPPVNYKTGNLYLRGPLKKSNAP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 LVNVTLYYEALCGGCRAFLIRELFPTWLLVMEILNVTLVPYGNAQEQNVSGRWEFKCQHG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 LVNVTLYYEALCGGCRAFLIRELFPTWLLVMEILNVTLVPYGNAQEQNVSGRWEFKCQHG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 EEECKFNKVEACVLDELDMELAFLTIVCMEEFEDMERSLPLCLQLYAPGLSPDTIMECAM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 EEECKFNKVEACVLDELDMELAFLTIVCMEEFEDMERSLPLCLQLYAPGLSPDTIMECAM 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 GDRGMQLMHANAQRTDALQPPHEYVPWVTVNGKPLEDQTQLLTLVCQLYQGKKPDVCPSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 GDRGMQLMHANAQRTDALQPPHEYVPWVTVNGKPLEDQTQLLTLVCQLYQGKKPDVCPSS 190 200 210 220 230 240 250 pF1KE1 TSSLRSVCFK :::::::::: NP_006 TSSLRSVCFK 250 250 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 00:41:47 2016 done: Mon Nov 7 00:41:48 2016 Total Scan time: 7.120 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]