FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1336, 250 aa
  1>>>pF1KE1336 250 - 250 aa - 250 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4048+/-0.000678; mu= 14.0357+/- 0.041
 mean_var=64.7192+/-12.898, 0's: 0 Z-trim(110.4): 9  B-trim: 50 in 1/48
 Lambda= 0.159426
 statistics sampled from 11580 (11584) to 11580 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.736), E-opt: 0.2 (0.356), width:  16
 Scan time:  2.370

The best scores are:                                      opt bits E(32554)
CCDS46015.1 IFI30 gene_id:10437|Hs108|chr19        ( 250) 1719 403.5 6.8e-113


>>CCDS46015.1 IFI30 gene_id:10437|Hs108|chr19             (250 aa)
 initn: 1719 init1: 1719 opt: 1719  Z-score: 2140.3  bits: 403.5 E(32554): 6.8e-113
Smith-Waterman score: 1719; 100.0% identity (100.0% similar) in 250 aa overlap (1-250:1-250)

               10        20        30        40        50        60
pF1KE1 MTLSPLLLFLPPLLLLLDVPTAAVQASPLQALDFFGNGPPVNYKTGNLYLRGPLKKSNAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MTLSPLLLFLPPLLLLLDVPTAAVQASPLQALDFFGNGPPVNYKTGNLYLRGPLKKSNAP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 LVNVTLYYEALCGGCRAFLIRELFPTWLLVMEILNVTLVPYGNAQEQNVSGRWEFKCQHG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LVNVTLYYEALCGGCRAFLIRELFPTWLLVMEILNVTLVPYGNAQEQNVSGRWEFKCQHG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 EEECKFNKVEACVLDELDMELAFLTIVCMEEFEDMERSLPLCLQLYAPGLSPDTIMECAM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 EEECKFNKVEACVLDELDMELAFLTIVCMEEFEDMERSLPLCLQLYAPGLSPDTIMECAM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 GDRGMQLMHANAQRTDALQPPHEYVPWVTVNGKPLEDQTQLLTLVCQLYQGKKPDVCPSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 GDRGMQLMHANAQRTDALQPPHEYVPWVTVNGKPLEDQTQLLTLVCQLYQGKKPDVCPSS
              190       200       210       220       230       240

              250
pF1KE1 TSSLRSVCFK
       ::::::::::
CCDS46 TSSLRSVCFK
              250




250 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 00:41:46 2016 done: Mon Nov  7 00:41:46 2016
 Total Scan time:  2.370 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]