FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5226, 176 aa 1>>>pF1KE5226 176 - 176 aa - 176 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.0007+/-0.000343; mu= 13.8288+/- 0.021 mean_var=59.8142+/-12.213, 0's: 0 Z-trim(114.3): 13 B-trim: 312 in 1/50 Lambda= 0.165833 statistics sampled from 24057 (24065) to 24057 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.677), E-opt: 0.2 (0.282), width: 16 Scan time: 4.980 The best scores are: opt bits E(85289) NP_115990 (OMIM: 251120,608419) methylmalonyl-CoA ( 176) 1131 278.7 3.4e-75 XP_005264670 (OMIM: 251120,608419) PREDICTED: meth ( 122) 459 117.8 6.3e-27 >>NP_115990 (OMIM: 251120,608419) methylmalonyl-CoA epim (176 aa) initn: 1131 init1: 1131 opt: 1131 Z-score: 1470.9 bits: 278.7 E(85289): 3.4e-75 Smith-Waterman score: 1131; 99.4% identity (99.4% similar) in 176 aa overlap (1-176:1-176) 10 20 30 40 50 60 pF1KE5 MARVLKAAAANAVGLFSRLQAPIPTVRASSTSQPLDQVTGSVWNLGRLNHVAIAVPDLEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_115 MARVLKAAAANAVGLFSRLQAPIPTVRASSTSQPLDQVTGSVWNLGRLNHVAIAVPDLEK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 AAAFYKNILGAQVSEAVPLPEHGVSVVFVNLGNTKMELLHPLGLDSPIAGFLQKNKAGGM ::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::: NP_115 AAAFYKNILGAQVSEAVPLPEHGVSVVFVNLGNTKMELLHPLGRDSPIAGFLQKNKAGGM 70 80 90 100 110 120 130 140 150 160 170 pF1KE5 HHICIEVDNINAAVMDLKKKKIRSLSEEVKIGAHGKPVIFLHPKDCGGVLVELEQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_115 HHICIEVDNINAAVMDLKKKKIRSLSEEVKIGAHGKPVIFLHPKDCGGVLVELEQA 130 140 150 160 170 >>XP_005264670 (OMIM: 251120,608419) PREDICTED: methylma (122 aa) initn: 503 init1: 457 opt: 459 Z-score: 604.4 bits: 117.8 E(85289): 6.3e-27 Smith-Waterman score: 657; 69.3% identity (69.3% similar) in 176 aa overlap (1-176:1-122) 10 20 30 40 50 60 pF1KE5 MARVLKAAAANAVGLFSRLQAPIPTVRASSTSQPLDQVTGSVWNLGRLNHVAIAVPDLEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MARVLKAAAANAVGLFSRLQAPIPTVRASSTSQPLDQVTGSVWNLGRLNHVAIAVPDLEK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 AAAFYKNILGAQVSEAVPLPEHGVSVVFVNLGNTKMELLHPLGLDSPIAGFLQKNKAGGM ::::::::::::: XP_005 AAAFYKNILGAQV----------------------------------------------- 70 130 140 150 160 170 pF1KE5 HHICIEVDNINAAVMDLKKKKIRSLSEEVKIGAHGKPVIFLHPKDCGGVLVELEQA ::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 -------DNINAAVMDLKKKKIRSLSEEVKIGAHGKPVIFLHPKDCGGVLVELEQA 80 90 100 110 120 176 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 22:41:11 2016 done: Mon Nov 7 22:41:12 2016 Total Scan time: 4.980 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]