FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6220, 288 aa 1>>>pF1KE6220 288 - 288 aa - 288 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.5102+/-0.000364; mu= 3.9112+/- 0.023 mean_var=287.2767+/-59.577, 0's: 0 Z-trim(123.3): 134 B-trim: 1870 in 2/59 Lambda= 0.075670 statistics sampled from 42733 (42982) to 42733 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.801), E-opt: 0.2 (0.504), width: 16 Scan time: 5.680 The best scores are: opt bits E(85289) NP_775628 (OMIM: 604973,613860) ficolin-3 isoform ( 288) 2086 240.2 3.5e-63 NP_003656 (OMIM: 604973,613860) ficolin-3 isoform ( 299) 1622 189.6 6.3e-48 XP_011516694 (OMIM: 601624) PREDICTED: ficolin-2 i ( 302) 956 116.9 4.9e-26 NP_004099 (OMIM: 601624) ficolin-2 isoform a precu ( 313) 956 116.9 5e-26 NP_056652 (OMIM: 601624) ficolin-2 isoform b precu ( 275) 950 116.2 7.3e-26 XP_006717078 (OMIM: 601624) PREDICTED: ficolin-2 i ( 264) 949 116.0 7.6e-26 NP_001994 (OMIM: 601252) ficolin-1 precursor [Homo ( 326) 925 113.5 5.4e-25 NP_001315564 (OMIM: 601995) tenascin-R isoform 2 [ (1025) 708 90.4 1.5e-17 XP_011508251 (OMIM: 601995) PREDICTED: tenascin-R (1199) 708 90.5 1.7e-17 NP_003276 (OMIM: 601995) tenascin-R isoform 1 prec (1358) 708 90.6 1.8e-17 XP_016857708 (OMIM: 601995) PREDICTED: tenascin-R (1358) 708 90.6 1.8e-17 XP_016857707 (OMIM: 601995) PREDICTED: tenascin-R (1358) 708 90.6 1.8e-17 NP_036230 (OMIM: 605001) angiopoietin-related prot ( 493) 677 86.7 9.9e-17 NP_002395 (OMIM: 600596) microfibril-associated gl ( 255) 671 85.7 1e-16 NP_001185624 (OMIM: 600596) microfibril-associated ( 279) 671 85.7 1.1e-16 NP_114123 (OMIM: 609336) angiopoietin-related prot ( 470) 668 85.6 1.9e-16 XP_011526649 (OMIM: 609336) PREDICTED: angiopoieti ( 470) 668 85.6 1.9e-16 XP_016882836 (OMIM: 609336) PREDICTED: angiopoieti ( 470) 668 85.6 1.9e-16 XP_011526652 (OMIM: 609336) PREDICTED: angiopoieti ( 470) 668 85.6 1.9e-16 NP_001308340 (OMIM: 609336) angiopoietin-related p ( 470) 668 85.6 1.9e-16 XP_011526650 (OMIM: 609336) PREDICTED: angiopoieti ( 537) 668 85.7 2.1e-16 XP_011526651 (OMIM: 609336) PREDICTED: angiopoieti ( 537) 668 85.7 2.1e-16 XP_005260148 (OMIM: 609336) PREDICTED: angiopoieti ( 551) 668 85.7 2.1e-16 NP_116232 (OMIM: 613357) fibrinogen C domain-conta ( 461) 639 82.5 1.7e-15 NP_001138578 (OMIM: 613357) fibrinogen C domain-co ( 461) 639 82.5 1.7e-15 XP_005245634 (OMIM: 603874) PREDICTED: angiopoieti ( 491) 637 82.3 2e-15 NP_004664 (OMIM: 603874) angiopoietin-related prot ( 491) 637 82.3 2e-15 XP_005252032 (OMIM: 187380,615629) PREDICTED: tena (1564) 638 83.0 4e-15 XP_005252031 (OMIM: 187380,615629) PREDICTED: tena (1655) 638 83.0 4.1e-15 XP_006717164 (OMIM: 187380,615629) PREDICTED: tena (1655) 638 83.0 4.1e-15 XP_011516931 (OMIM: 187380,615629) PREDICTED: tena (1746) 638 83.0 4.3e-15 XP_011516930 (OMIM: 187380,615629) PREDICTED: tena (1746) 638 83.0 4.3e-15 XP_005252030 (OMIM: 187380,615629) PREDICTED: tena (1837) 638 83.1 4.4e-15 XP_011516928 (OMIM: 187380,615629) PREDICTED: tena (1929) 638 83.1 4.6e-15 XP_011516927 (OMIM: 187380,615629) PREDICTED: tena (2019) 638 83.1 4.7e-15 XP_006717161 (OMIM: 187380,615629) PREDICTED: tena (2019) 638 83.1 4.7e-15 XP_016870170 (OMIM: 187380,615629) PREDICTED: tena (2020) 638 83.1 4.7e-15 XP_005252029 (OMIM: 187380,615629) PREDICTED: tena (2110) 638 83.1 4.8e-15 XP_006717160 (OMIM: 187380,615629) PREDICTED: tena (2110) 638 83.1 4.8e-15 NP_002151 (OMIM: 187380,615629) tenascin precursor (2201) 638 83.2 5e-15 XP_016870169 (OMIM: 187380,615629) PREDICTED: tena (2292) 638 83.2 5.1e-15 XP_016870168 (OMIM: 187380,615629) PREDICTED: tena (2293) 638 83.2 5.1e-15 XP_006717159 (OMIM: 187380,615629) PREDICTED: tena (2293) 638 83.2 5.1e-15 XP_016870167 (OMIM: 187380,615629) PREDICTED: tena (2384) 638 83.2 5.2e-15 NP_115859 (OMIM: 600985,606408,615963) tenascin-X ( 673) 603 78.7 3.3e-14 NP_001300980 (OMIM: 601667) angiopoietin-1 isoform ( 298) 582 76.0 9.5e-14 NP_061978 (OMIM: 600985,606408,615963) tenascin-X (4242) 603 79.7 1.1e-13 NP_001186788 (OMIM: 601667) angiopoietin-1 isoform ( 497) 582 76.3 1.3e-13 NP_001137 (OMIM: 601667) angiopoietin-1 isoform 1 ( 498) 582 76.3 1.3e-13 XP_016868807 (OMIM: 601922) PREDICTED: angiopoieti ( 443) 575 75.5 2.1e-13 >>NP_775628 (OMIM: 604973,613860) ficolin-3 isoform 2 pr (288 aa) initn: 2086 init1: 2086 opt: 2086 Z-score: 1255.3 bits: 240.2 E(85289): 3.5e-63 Smith-Waterman score: 2086; 100.0% identity (100.0% similar) in 288 aa overlap (1-288:1-288) 10 20 30 40 50 60 pF1KE6 MDLLWILPSLWLLLLGGPACLKTQEHPSCPGPRELEASKVVLLPSCPGAPGSPGEKGAPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_775 MDLLWILPSLWLLLLGGPACLKTQEHPSCPGPRELEASKVVLLPSCPGAPGSPGEKGAPG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 PQGPPGPPGKMGPKGEPGPRNCRELLSQGATLSGWYHLCLPEGRALPVFCDMDTEGGGWL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_775 PQGPPGPPGKMGPKGEPGPRNCRELLSQGATLSGWYHLCLPEGRALPVFCDMDTEGGGWL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 VFQRRQDGSVDFFRSWSSYRAGFGNQESEFWLGNENLHQLTLQGNWELRVELEDFNGNRT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_775 VFQRRQDGSVDFFRSWSSYRAGFGNQESEFWLGNENLHQLTLQGNWELRVELEDFNGNRT 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 FAHYATFRLLGEVDHYQLALGKFSEGTAGDSLSLHSGRPFTTYDADHDSSNSNCAVIVHG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_775 FAHYATFRLLGEVDHYQLALGKFSEGTAGDSLSLHSGRPFTTYDADHDSSNSNCAVIVHG 190 200 210 220 230 240 250 260 270 280 pF1KE6 AWWYASCYRSNLNGRYAVSEAAAHKYGIDWASGRGVGHPYRRVRMMLR :::::::::::::::::::::::::::::::::::::::::::::::: NP_775 AWWYASCYRSNLNGRYAVSEAAAHKYGIDWASGRGVGHPYRRVRMMLR 250 260 270 280 >>NP_003656 (OMIM: 604973,613860) ficolin-3 isoform 1 pr (299 aa) initn: 1506 init1: 1506 opt: 1622 Z-score: 981.4 bits: 189.6 E(85289): 6.3e-48 Smith-Waterman score: 2054; 96.3% identity (96.3% similar) in 299 aa overlap (1-288:1-299) 10 20 30 40 50 60 pF1KE6 MDLLWILPSLWLLLLGGPACLKTQEHPSCPGPRELEASKVVLLPSCPGAPGSPGEKGAPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 MDLLWILPSLWLLLLGGPACLKTQEHPSCPGPRELEASKVVLLPSCPGAPGSPGEKGAPG 10 20 30 40 50 60 70 80 90 100 pF1KE6 PQGPPGPPGKMGPKGEPG-----------PRNCRELLSQGATLSGWYHLCLPEGRALPVF :::::::::::::::::: ::::::::::::::::::::::::::::::: NP_003 PQGPPGPPGKMGPKGEPGDPVNLLRCQEGPRNCRELLSQGATLSGWYHLCLPEGRALPVF 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE6 CDMDTEGGGWLVFQRRQDGSVDFFRSWSSYRAGFGNQESEFWLGNENLHQLTLQGNWELR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 CDMDTEGGGWLVFQRRQDGSVDFFRSWSSYRAGFGNQESEFWLGNENLHQLTLQGNWELR 130 140 150 160 170 180 170 180 190 200 210 220 pF1KE6 VELEDFNGNRTFAHYATFRLLGEVDHYQLALGKFSEGTAGDSLSLHSGRPFTTYDADHDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 VELEDFNGNRTFAHYATFRLLGEVDHYQLALGKFSEGTAGDSLSLHSGRPFTTYDADHDS 190 200 210 220 230 240 230 240 250 260 270 280 pF1KE6 SNSNCAVIVHGAWWYASCYRSNLNGRYAVSEAAAHKYGIDWASGRGVGHPYRRVRMMLR ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 SNSNCAVIVHGAWWYASCYRSNLNGRYAVSEAAAHKYGIDWASGRGVGHPYRRVRMMLR 250 260 270 280 290 >>XP_011516694 (OMIM: 601624) PREDICTED: ficolin-2 isofo (302 aa) initn: 971 init1: 831 opt: 956 Z-score: 588.4 bits: 116.9 E(85289): 4.9e-26 Smith-Waterman score: 991; 50.2% identity (73.7% similar) in 281 aa overlap (28-288:20-300) 10 20 30 40 50 pF1KE6 MDLLWILPSLWLLLLGGPACLKTQEHPSCPGPRE--LEAS-KVVLLPSCPGAPGSPGEKG .:: . ::.: :...: .::: ::.:: :: XP_011 MGPALLALSFLWTMALTEDTCPEVKMVGLEGSDKLTILRGCPGLPGAPGPKG 10 20 30 40 50 60 70 80 90 100 pF1KE6 APGP------QGPPGPPGKMGPKG------EP-----GPRNCRELLSQGATLSGWYHLCL : .:::::::: :: : :: :::.:..::..: ::::. . : XP_011 EAGTNGKRGERGPPGPPGKAGPPGPNGAPGEPQPCLTGPRTCKDLLDRGHFLSGWHTIYL 60 70 80 90 100 110 110 120 130 140 150 160 pF1KE6 PEGRALPVFCDMDTEGGGWLVFQRRQDGSVDFFRSWSSYRAGFGNQESEFWLGNENLHQL :. : : :.:::::.:::: ::::: ::::::.:.:..:. :::.. .::::::.:.: : XP_011 PDCRPLTVLCDMDTDGGGWTVFQRRVDGSVDFYRDWATYKQGFGSRLGEFWLGNDNIHAL 120 130 140 150 160 170 170 180 190 200 210 220 pF1KE6 TLQGNWELRVELEDFNGNRTFAHYATFRLLGEVDHYQLALGKFSEGTAGDSLSLHSGRPF : ::. ::::.: ::. : ::.: .:.. :...:.:.:: : ::.:::::..:... : XP_011 TAQGTSELRVDLVDFEDNYQFAKYRSFKVADEAEKYNLVLGAFVEGSAGDSLTFHNNQSF 180 190 200 210 220 230 230 240 250 260 270 280 pF1KE6 TTYDADHDSSNSNCAVIVHGAWWYASCYRSNLNGRYAVSEAAAHKYGIDWASGRGVGHPY .: : :.: ...::::. .::::: .:. ::::::: . .. ::.: ::.: .. : XP_011 STKDQDNDLNTGNCAVMFQGAWWYKNCHVSNLNGRYLRGTHGSFANGINWKSGKGYNYSY 240 250 260 270 280 290 pF1KE6 RRVRMMLR . .: .: XP_011 KVSEMKVRPA 300 >>NP_004099 (OMIM: 601624) ficolin-2 isoform a precursor (313 aa) initn: 971 init1: 831 opt: 956 Z-score: 588.2 bits: 116.9 E(85289): 5e-26 Smith-Waterman score: 998; 48.7% identity (72.3% similar) in 300 aa overlap (9-288:14-311) 10 20 30 40 50 pF1KE6 MDLLWILPSLWLLLLGGPACLKTQEHPSCPGPRE--LEAS-KVVLLPSCPGAPGS .: : .:: :.. . .:: . ::.: :...: .::: ::. NP_004 MELDRAVGVLGAATLLLSFLGMAWALQAAD--TCPEVKMVGLEGSDKLTILRGCPGLPGA 10 20 30 40 50 60 70 80 90 pF1KE6 PGEKGAPGP------QGPPGPPGKMGPKG------EP-----GPRNCRELLSQGATLSGW :: :: : .:::::::: :: : :: :::.:..::..: :::: NP_004 PGPKGEAGTNGKRGERGPPGPPGKAGPPGPNGAPGEPQPCLTGPRTCKDLLDRGHFLSGW 60 70 80 90 100 110 100 110 120 130 140 150 pF1KE6 YHLCLPEGRALPVFCDMDTEGGGWLVFQRRQDGSVDFFRSWSSYRAGFGNQESEFWLGNE . . ::. : : :.:::::.:::: ::::: ::::::.:.:..:. :::.. .::::::. NP_004 HTIYLPDCRPLTVLCDMDTDGGGWTVFQRRVDGSVDFYRDWATYKQGFGSRLGEFWLGND 120 130 140 150 160 170 160 170 180 190 200 210 pF1KE6 NLHQLTLQGNWELRVELEDFNGNRTFAHYATFRLLGEVDHYQLALGKFSEGTAGDSLSLH :.: :: ::. ::::.: ::. : ::.: .:.. :...:.:.:: : ::.:::::..: NP_004 NIHALTAQGTSELRVDLVDFEDNYQFAKYRSFKVADEAEKYNLVLGAFVEGSAGDSLTFH 180 190 200 210 220 230 220 230 240 250 260 270 pF1KE6 SGRPFTTYDADHDSSNSNCAVIVHGAWWYASCYRSNLNGRYAVSEAAAHKYGIDWASGRG ... :.: : :.: ...::::. .::::: .:. ::::::: . .. ::.: ::.: NP_004 NNQSFSTKDQDNDLNTGNCAVMFQGAWWYKNCHVSNLNGRYLRGTHGSFANGINWKSGKG 240 250 260 270 280 290 280 pF1KE6 VGHPYRRVRMMLR .. :. .: .: NP_004 YNYSYKVSEMKVRPA 300 310 >>NP_056652 (OMIM: 601624) ficolin-2 isoform b precursor (275 aa) initn: 956 init1: 831 opt: 950 Z-score: 585.3 bits: 116.2 E(85289): 7.3e-26 Smith-Waterman score: 950; 52.2% identity (75.9% similar) in 245 aa overlap (49-288:29-273) 20 30 40 50 60 70 pF1KE6 ACLKTQEHPSCPGPRELEASKVVLLPSCPGAPGSPGEKGAPGPQGPPGPPGKMGPKGEP- : :::.: ::: : :::: : ::: NP_056 MELDRAVGVLGAATLLLSFLGMAWALQAADTCPGERGPPGPPGKAGPPGPNGAPGEPQ 10 20 30 40 50 80 90 100 110 120 130 pF1KE6 ----GPRNCRELLSQGATLSGWYHLCLPEGRALPVFCDMDTEGGGWLVFQRRQDGSVDFF :::.:..::..: ::::. . ::. : : :.:::::.:::: ::::: ::::::. NP_056 PCLTGPRTCKDLLDRGHFLSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRVDGSVDFY 60 70 80 90 100 110 140 150 160 170 180 190 pF1KE6 RSWSSYRAGFGNQESEFWLGNENLHQLTLQGNWELRVELEDFNGNRTFAHYATFRLLGEV :.:..:. :::.. .::::::.:.: :: ::. ::::.: ::. : ::.: .:.. :. NP_056 RDWATYKQGFGSRLGEFWLGNDNIHALTAQGTSELRVDLVDFEDNYQFAKYRSFKVADEA 120 130 140 150 160 170 200 210 220 230 240 250 pF1KE6 DHYQLALGKFSEGTAGDSLSLHSGRPFTTYDADHDSSNSNCAVIVHGAWWYASCYRSNLN ..:.:.:: : ::.:::::..:... :.: : :.: ...::::. .::::: .:. :::: NP_056 EKYNLVLGAFVEGSAGDSLTFHNNQSFSTKDQDNDLNTGNCAVMFQGAWWYKNCHVSNLN 180 190 200 210 220 230 260 270 280 pF1KE6 GRYAVSEAAAHKYGIDWASGRGVGHPYRRVRMMLR ::: . .. ::.: ::.: .. :. .: .: NP_056 GRYLRGTHGSFANGINWKSGKGYNYSYKVSEMKVRPA 240 250 260 270 >>XP_006717078 (OMIM: 601624) PREDICTED: ficolin-2 isofo (264 aa) initn: 955 init1: 831 opt: 949 Z-score: 584.9 bits: 116.0 E(85289): 7.6e-26 Smith-Waterman score: 949; 52.7% identity (76.8% similar) in 241 aa overlap (53-288:22-262) 30 40 50 60 70 pF1KE6 TQEHPSCPGPRELEASKVVLLPSCPGAPGSPGEKGAPGPQGPPGPPGKMGPKGEP----- :::.: ::: : :::: : ::: XP_006 MGPALLALSFLWTMALTEDTCPGERGPPGPPGKAGPPGPNGAPGEPQPCLT 10 20 30 40 50 80 90 100 110 120 130 pF1KE6 GPRNCRELLSQGATLSGWYHLCLPEGRALPVFCDMDTEGGGWLVFQRRQDGSVDFFRSWS :::.:..::..: ::::. . ::. : : :.:::::.:::: ::::: ::::::.:.:. XP_006 GPRTCKDLLDRGHFLSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRVDGSVDFYRDWA 60 70 80 90 100 110 140 150 160 170 180 190 pF1KE6 SYRAGFGNQESEFWLGNENLHQLTLQGNWELRVELEDFNGNRTFAHYATFRLLGEVDHYQ .:. :::.. .::::::.:.: :: ::. ::::.: ::. : ::.: .:.. :...:. XP_006 TYKQGFGSRLGEFWLGNDNIHALTAQGTSELRVDLVDFEDNYQFAKYRSFKVADEAEKYN 120 130 140 150 160 170 200 210 220 230 240 250 pF1KE6 LALGKFSEGTAGDSLSLHSGRPFTTYDADHDSSNSNCAVIVHGAWWYASCYRSNLNGRYA :.:: : ::.:::::..:... :.: : :.: ...::::. .::::: .:. ::::::: XP_006 LVLGAFVEGSAGDSLTFHNNQSFSTKDQDNDLNTGNCAVMFQGAWWYKNCHVSNLNGRYL 180 190 200 210 220 230 260 270 280 pF1KE6 VSEAAAHKYGIDWASGRGVGHPYRRVRMMLR . .. ::.: ::.: .. :. .: .: XP_006 RGTHGSFANGINWKSGKGYNYSYKVSEMKVRPA 240 250 260 >>NP_001994 (OMIM: 601252) ficolin-1 precursor [Homo sap (326 aa) initn: 1422 init1: 823 opt: 925 Z-score: 569.7 bits: 113.5 E(85289): 5.4e-25 Smith-Waterman score: 937; 45.7% identity (67.2% similar) in 317 aa overlap (4-288:12-324) 10 20 30 40 pF1KE6 MDLLWILPSLWLLLLGGPACLKTQEHPSCPGPRE--LEAS-KVVLLPSCPGA : .: :.: . . :: : .:: . ::.: :...: .::: NP_001 MELSGATMARGLAVLLVLFLHIKNLPA----QAADTCPEVKVVGLEGSDKLTILRGCPGL 10 20 30 40 50 50 60 70 80 pF1KE6 PGSPGEKG---------------APGPQGPPGPPGKMGPKG--------------EPGPR ::.:: :: ::: :: :: : : :: ::: NP_001 PGAPGPKGEAGVIGERGERGLPGAPGKAGPVGPKGDRGEKGMRGEKGDAGQSQSCATGPR 60 70 80 90 100 110 90 100 110 120 130 140 pF1KE6 NCRELLSQGATLSGWYHLCLPEGRALPVFCDMDTEGGGWLVFQRRQDGSVDFFRSWSSYR ::..::..: ::::. . ::. : : :.:::::.:::: :::::.::::::.:.:..:. NP_001 NCKDLLDRGYFLSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRMDGSVDFYRDWAAYK 120 130 140 150 160 170 150 160 170 180 190 200 pF1KE6 AGFGNQESEFWLGNENLHQLTLQGNWELRVELEDFNGNRTFAHYATFRLLGEVDHYQLAL :::.: .::::::.:.: :: ::. ::::.: ::.::. ::.: .:.. :...:.:.: NP_001 QGFGSQLGEFWLGNDNIHALTAQGSSELRVDLVDFEGNHQFAKYKSFKVADEAEKYKLVL 180 190 200 210 220 230 210 220 230 240 250 260 pF1KE6 GKFSEGTAGDSLSLHSGRPFTTYDADHDSSNSNCAVIVHGAWWYASCYRSNLNGRYAVSE : : :.::.::. :.. :.: : :.: :.:::: .::::::.:. ::::: : .. NP_001 GAFVGGSAGNSLTGHNNNFFSTKDQDNDVSSSNCAEKFQGAWWYADCHASNLNGLYLMGP 240 250 260 270 280 290 270 280 pF1KE6 AAAHKYGIDWASGRGVGHPYRRVRMMLR .. ::.:....: . :. .: .: NP_001 HESYANGINWSAAKGYKYSYKVSEMKVRPA 300 310 320 >>NP_001315564 (OMIM: 601995) tenascin-R isoform 2 [Homo (1025 aa) initn: 578 init1: 338 opt: 708 Z-score: 435.9 bits: 90.4 E(85289): 1.5e-17 Smith-Waterman score: 708; 47.5% identity (72.6% similar) in 219 aa overlap (72-288:795-1008) 50 60 70 80 90 100 pF1KE6 LLPSCPGAPGSPGEKGAPGPQGPPGPPGKMGPKGEPGPRNCRELLSQGATLSGWYHLCL- : . : :..: . : .: :::: : . : NP_001 GLLENTDYTVLLQAAQDTTWSSITSTAFTTGGRVFPHPQDCAQHLMNGDTLSGVYPIFLN 770 780 790 800 810 820 110 120 130 140 150 pF1KE6 -PEGRALPVFCDMDTEGGGWLVFQRRQDGSVDFFRSWSSYRAGFGNQESEFWLGNENLHQ .. : :.::: :.::::.::::::.:..::::.:..::.:::: :.::::: .:.:. NP_001 GELSQKLQVYCDMTTDGGGWIVFQRRQNGQTDFFRKWADYRVGFGNVEDEFWLGLDNIHR 830 840 850 860 870 880 160 170 180 190 200 210 pF1KE6 LTLQGNWELRVELEDFNGNRTFAHYATFRLLGEVDHYQLALGKFSEGTAGDSLSLHSGRP .: :: .::::...: . . .:: : : . . :.: .:... :::::::: :.::: NP_001 ITSQGRYELRVDMRD-GQEAAFASYDRFSVEDSRNLYKLRIGSYN-GTAGDSLSYHQGRP 890 900 910 920 930 940 220 230 240 250 260 270 pF1KE6 FTTYDADHDSSNSNCAVIVHGAWWYASCYRSNLNGRYAVSEAAAHKYGIDWASGRGVGHP :.: : :.: . .:::. .::::: .:.:.::::.:. :. :. ::.: .: NP_001 FSTEDRDNDVAVTNCAMSYKGAWWYKNCHRTNLNGKYGESR---HSQGINWYHWKGHEFS 950 960 970 980 990 280 pF1KE6 YRRVRMMLR :.: .: NP_001 IPFVEMKMRPYNHRLMAGRKRQSLQF 1000 1010 1020 >>XP_011508251 (OMIM: 601995) PREDICTED: tenascin-R isof (1199 aa) initn: 578 init1: 338 opt: 708 Z-score: 435.2 bits: 90.5 E(85289): 1.7e-17 Smith-Waterman score: 708; 47.5% identity (72.6% similar) in 219 aa overlap (72-288:969-1182) 50 60 70 80 90 100 pF1KE6 LLPSCPGAPGSPGEKGAPGPQGPPGPPGKMGPKGEPGPRNCRELLSQGATLSGWYHLCL- : . : :..: . : .: :::: : . : XP_011 GLLENTDYTVLLQAAQDTTWSSITSTAFTTGGRVFPHPQDCAQHLMNGDTLSGVYPIFLN 940 950 960 970 980 990 110 120 130 140 150 pF1KE6 -PEGRALPVFCDMDTEGGGWLVFQRRQDGSVDFFRSWSSYRAGFGNQESEFWLGNENLHQ .. : :.::: :.::::.::::::.:..::::.:..::.:::: :.::::: .:.:. XP_011 GELSQKLQVYCDMTTDGGGWIVFQRRQNGQTDFFRKWADYRVGFGNVEDEFWLGLDNIHR 1000 1010 1020 1030 1040 1050 160 170 180 190 200 210 pF1KE6 LTLQGNWELRVELEDFNGNRTFAHYATFRLLGEVDHYQLALGKFSEGTAGDSLSLHSGRP .: :: .::::...: . . .:: : : . . :.: .:... :::::::: :.::: XP_011 ITSQGRYELRVDMRD-GQEAAFASYDRFSVEDSRNLYKLRIGSYN-GTAGDSLSYHQGRP 1060 1070 1080 1090 1100 1110 220 230 240 250 260 270 pF1KE6 FTTYDADHDSSNSNCAVIVHGAWWYASCYRSNLNGRYAVSEAAAHKYGIDWASGRGVGHP :.: : :.: . .:::. .::::: .:.:.::::.:. :. :. ::.: .: XP_011 FSTEDRDNDVAVTNCAMSYKGAWWYKNCHRTNLNGKYGESR---HSQGINWYHWKGHEFS 1120 1130 1140 1150 1160 1170 280 pF1KE6 YRRVRMMLR :.: .: XP_011 IPFVEMKMRPYNHRLMAGRKRQSLQF 1180 1190 >>NP_003276 (OMIM: 601995) tenascin-R isoform 1 precurso (1358 aa) initn: 578 init1: 338 opt: 708 Z-score: 434.5 bits: 90.6 E(85289): 1.8e-17 Smith-Waterman score: 708; 47.5% identity (72.6% similar) in 219 aa overlap (72-288:1128-1341) 50 60 70 80 90 100 pF1KE6 LLPSCPGAPGSPGEKGAPGPQGPPGPPGKMGPKGEPGPRNCRELLSQGATLSGWYHLCL- : . : :..: . : .: :::: : . : NP_003 GLLENTDYTVLLQAAQDTTWSSITSTAFTTGGRVFPHPQDCAQHLMNGDTLSGVYPIFLN 1100 1110 1120 1130 1140 1150 110 120 130 140 150 pF1KE6 -PEGRALPVFCDMDTEGGGWLVFQRRQDGSVDFFRSWSSYRAGFGNQESEFWLGNENLHQ .. : :.::: :.::::.::::::.:..::::.:..::.:::: :.::::: .:.:. NP_003 GELSQKLQVYCDMTTDGGGWIVFQRRQNGQTDFFRKWADYRVGFGNVEDEFWLGLDNIHR 1160 1170 1180 1190 1200 1210 160 170 180 190 200 210 pF1KE6 LTLQGNWELRVELEDFNGNRTFAHYATFRLLGEVDHYQLALGKFSEGTAGDSLSLHSGRP .: :: .::::...: . . .:: : : . . :.: .:... :::::::: :.::: NP_003 ITSQGRYELRVDMRD-GQEAAFASYDRFSVEDSRNLYKLRIGSYN-GTAGDSLSYHQGRP 1220 1230 1240 1250 1260 1270 220 230 240 250 260 270 pF1KE6 FTTYDADHDSSNSNCAVIVHGAWWYASCYRSNLNGRYAVSEAAAHKYGIDWASGRGVGHP :.: : :.: . .:::. .::::: .:.:.::::.:. :. :. ::.: .: NP_003 FSTEDRDNDVAVTNCAMSYKGAWWYKNCHRTNLNGKYGESR---HSQGINWYHWKGHEFS 1280 1290 1300 1310 1320 1330 280 pF1KE6 YRRVRMMLR :.: .: NP_003 IPFVEMKMRPYNHRLMAGRKRQSLQF 1340 1350 288 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 11:12:13 2016 done: Tue Nov 8 11:12:14 2016 Total Scan time: 5.680 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]