FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1447, 292 aa 1>>>pF1KE1447 292 - 292 aa - 292 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.0335+/-0.00036; mu= 16.8760+/- 0.022 mean_var=63.2514+/-12.583, 0's: 0 Z-trim(113.0): 18 B-trim: 44 in 1/48 Lambda= 0.161265 statistics sampled from 22088 (22094) to 22088 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.636), E-opt: 0.2 (0.259), width: 16 Scan time: 6.970 The best scores are: opt bits E(85289) NP_008826 (OMIM: 600807,605238,616739) histamine N ( 292) 1945 461.1 1.1e-129 XP_016859437 (OMIM: 600807,605238,616739) PREDICTE ( 258) 1630 387.8 1.2e-107 XP_011509366 (OMIM: 600807,605238,616739) PREDICTE ( 166) 1123 269.7 2.7e-72 XP_016859438 (OMIM: 600807,605238,616739) PREDICTE ( 161) 942 227.6 1.2e-59 NP_001019246 (OMIM: 600807,605238,616739) histamin ( 126) 419 105.8 4.3e-23 NP_001019245 (OMIM: 600807,605238,616739) histamin ( 51) 316 81.6 3.4e-16 >>NP_008826 (OMIM: 600807,605238,616739) histamine N-met (292 aa) initn: 1945 init1: 1945 opt: 1945 Z-score: 2449.0 bits: 461.1 E(85289): 1.1e-129 Smith-Waterman score: 1945; 99.7% identity (100.0% similar) in 292 aa overlap (1-292:1-292) 10 20 30 40 50 60 pF1KE1 MASSMRSLFSDHGKYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_008 MASSMRSLFSDHGKYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 GGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_008 GGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 SEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_008 SEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWD 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 KLWKKYGSRFPQDDLCQYITSDDLTQMLDNLGLKYECYDLLSTMDISDCFIDGDENGDLL :::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::: NP_008 KLWKKYGSRFPQDDLCQYITSDDLTQMLDNLGLKYECYDLLSTMDISDCFIDGNENGDLL 190 200 210 220 230 240 250 260 270 280 290 pF1KE1 WDFLTETCNFNATAPPDLRAELGKDLQEPEFSAKKEGKVLFNNTLSFIVIEA :::::::::::::::::::::::::::::::::::::::::::::::::::: NP_008 WDFLTETCNFNATAPPDLRAELGKDLQEPEFSAKKEGKVLFNNTLSFIVIEA 250 260 270 280 290 >>XP_016859437 (OMIM: 600807,605238,616739) PREDICTED: h (258 aa) initn: 1630 init1: 1630 opt: 1630 Z-score: 2053.7 bits: 387.8 E(85289): 1.2e-107 Smith-Waterman score: 1630; 97.2% identity (98.8% similar) in 253 aa overlap (40-292:6-258) 10 20 30 40 50 60 pF1KE1 SDHGKYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQ : . . .::::::::::::::::::::::: XP_016 MAETLLSAWMTEIGDTKSEIKILSIGGGAGEIDLQ 10 20 30 70 80 90 100 110 120 pF1KE1 ILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 ILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLE 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE1 KKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 KKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSR 100 110 120 130 140 150 190 200 210 220 230 240 pF1KE1 FPQDDLCQYITSDDLTQMLDNLGLKYECYDLLSTMDISDCFIDGDENGDLLWDFLTETCN ::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::: XP_016 FPQDDLCQYITSDDLTQMLDNLGLKYECYDLLSTMDISDCFIDGNENGDLLWDFLTETCN 160 170 180 190 200 210 250 260 270 280 290 pF1KE1 FNATAPPDLRAELGKDLQEPEFSAKKEGKVLFNNTLSFIVIEA ::::::::::::::::::::::::::::::::::::::::::: XP_016 FNATAPPDLRAELGKDLQEPEFSAKKEGKVLFNNTLSFIVIEA 220 230 240 250 >>XP_011509366 (OMIM: 600807,605238,616739) PREDICTED: h (166 aa) initn: 1123 init1: 1123 opt: 1123 Z-score: 1419.0 bits: 269.7 E(85289): 2.7e-72 Smith-Waterman score: 1123; 99.4% identity (100.0% similar) in 166 aa overlap (127-292:1-166) 100 110 120 130 140 150 pF1KE1 KYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLK :::::::::::::::::::::::::::::: XP_011 MLEKKELQKWDFIHMIQMLYYVKDIPATLK 10 20 30 160 170 180 190 200 210 pF1KE1 FFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDNLGLKYE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 FFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDNLGLKYE 40 50 60 70 80 90 220 230 240 250 260 270 pF1KE1 CYDLLSTMDISDCFIDGDENGDLLWDFLTETCNFNATAPPDLRAELGKDLQEPEFSAKKE :::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::: XP_011 CYDLLSTMDISDCFIDGNENGDLLWDFLTETCNFNATAPPDLRAELGKDLQEPEFSAKKE 100 110 120 130 140 150 280 290 pF1KE1 GKVLFNNTLSFIVIEA :::::::::::::::: XP_011 GKVLFNNTLSFIVIEA 160 >>XP_016859438 (OMIM: 600807,605238,616739) PREDICTED: h (161 aa) initn: 942 init1: 942 opt: 942 Z-score: 1191.6 bits: 227.6 E(85289): 1.2e-59 Smith-Waterman score: 942; 99.3% identity (100.0% similar) in 144 aa overlap (1-144:1-144) 10 20 30 40 50 60 pF1KE1 MASSMRSLFSDHGKYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MASSMRSLFSDHGKYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 GGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 SEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWD :::::::::::::::::::::::. XP_016 SEYQSRMLEKKELQKWDFIHMIQVNENLLISNFTSDHDLPK 130 140 150 160 >>NP_001019246 (OMIM: 600807,605238,616739) histamine N- (126 aa) initn: 419 init1: 419 opt: 419 Z-score: 535.5 bits: 105.8 E(85289): 4.3e-23 Smith-Waterman score: 419; 100.0% identity (100.0% similar) in 63 aa overlap (1-63:1-63) 10 20 30 40 50 60 pF1KE1 MASSMRSLFSDHGKYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MASSMRSLFSDHGKYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 GGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETS ::: NP_001 GGADCLIRGSSRVLKRNSCFILCSTRQKDKPGMRIHDERSSELPFGAARLESKSAFPSFL 70 80 90 100 110 120 >>NP_001019245 (OMIM: 600807,605238,616739) histamine N- (51 aa) initn: 316 init1: 316 opt: 316 Z-score: 411.8 bits: 81.6 E(85289): 3.4e-16 Smith-Waterman score: 316; 100.0% identity (100.0% similar) in 46 aa overlap (1-46:1-46) 10 20 30 40 50 60 pF1KE1 MASSMRSLFSDHGKYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIG :::::::::::::::::::::::::::::::::::::::::::::: NP_001 MASSMRSLFSDHGKYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGRYQNCC 10 20 30 40 50 70 80 90 100 110 120 pF1KE1 GGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETS 292 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 00:43:25 2016 done: Mon Nov 7 00:43:26 2016 Total Scan time: 6.970 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]