FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1447, 292 aa 1>>>pF1KE1447 292 - 292 aa - 292 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3779+/-0.000853; mu= 14.8813+/- 0.051 mean_var=64.0365+/-12.613, 0's: 0 Z-trim(106.0): 14 B-trim: 0 in 0/49 Lambda= 0.160273 statistics sampled from 8755 (8758) to 8755 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.647), E-opt: 0.2 (0.269), width: 16 Scan time: 2.380 The best scores are: opt bits E(32554) CCDS2181.1 HNMT gene_id:3176|Hs108|chr2 ( 292) 1945 458.3 2.9e-129 CCDS33296.1 HNMT gene_id:3176|Hs108|chr2 ( 126) 419 105.3 2.4e-23 CCDS33297.1 HNMT gene_id:3176|Hs108|chr2 ( 51) 316 81.3 1.6e-16 >>CCDS2181.1 HNMT gene_id:3176|Hs108|chr2 (292 aa) initn: 1945 init1: 1945 opt: 1945 Z-score: 2434.0 bits: 458.3 E(32554): 2.9e-129 Smith-Waterman score: 1945; 99.7% identity (100.0% similar) in 292 aa overlap (1-292:1-292) 10 20 30 40 50 60 pF1KE1 MASSMRSLFSDHGKYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS21 MASSMRSLFSDHGKYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 GGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS21 GGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 SEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS21 SEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWD 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 KLWKKYGSRFPQDDLCQYITSDDLTQMLDNLGLKYECYDLLSTMDISDCFIDGDENGDLL :::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::: CCDS21 KLWKKYGSRFPQDDLCQYITSDDLTQMLDNLGLKYECYDLLSTMDISDCFIDGNENGDLL 190 200 210 220 230 240 250 260 270 280 290 pF1KE1 WDFLTETCNFNATAPPDLRAELGKDLQEPEFSAKKEGKVLFNNTLSFIVIEA :::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS21 WDFLTETCNFNATAPPDLRAELGKDLQEPEFSAKKEGKVLFNNTLSFIVIEA 250 260 270 280 290 >>CCDS33296.1 HNMT gene_id:3176|Hs108|chr2 (126 aa) initn: 419 init1: 419 opt: 419 Z-score: 532.7 bits: 105.3 E(32554): 2.4e-23 Smith-Waterman score: 419; 100.0% identity (100.0% similar) in 63 aa overlap (1-63:1-63) 10 20 30 40 50 60 pF1KE1 MASSMRSLFSDHGKYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 MASSMRSLFSDHGKYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 GGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETS ::: CCDS33 GGADCLIRGSSRVLKRNSCFILCSTRQKDKPGMRIHDERSSELPFGAARLESKSAFPSFL 70 80 90 100 110 120 >>CCDS33297.1 HNMT gene_id:3176|Hs108|chr2 (51 aa) initn: 316 init1: 316 opt: 316 Z-score: 410.1 bits: 81.3 E(32554): 1.6e-16 Smith-Waterman score: 316; 100.0% identity (100.0% similar) in 46 aa overlap (1-46:1-46) 10 20 30 40 50 60 pF1KE1 MASSMRSLFSDHGKYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIG :::::::::::::::::::::::::::::::::::::::::::::: CCDS33 MASSMRSLFSDHGKYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGRYQNCC 10 20 30 40 50 70 80 90 100 110 120 pF1KE1 GGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETS 292 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 00:43:24 2016 done: Mon Nov 7 00:43:24 2016 Total Scan time: 2.380 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]