Result of FASTA (ccds) for
pFN21AE1488
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1488, 285 aa
1>>>pF1KE1488 285 - 285 aa - 285 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8391+/-0.000673; mu= 13.5537+/- 0.041
mean_var=80.3040+/-16.018, 0's: 0 Z-trim(111.3): 17 B-trim: 0 in 0/52
Lambda= 0.143122
statistics sampled from 12254 (12269) to 12254 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.746), E-opt: 0.2 (0.377), width: 16
Scan time: 2.670
The best scores are: opt bits E(32554)
CCDS9509.1 TNFSF13B gene_id:10673|Hs108|chr13 ( 285) 1847 390.3 8.5e-109
CCDS45067.1 TNFSF13B gene_id:10673|Hs108|chr13 ( 266) 906 196.0 2.5e-50
CCDS11111.1 TNFSF13 gene_id:8741|Hs108|chr17 ( 250) 308 72.5 3.5e-13
CCDS11108.1 TNFSF13 gene_id:407977|Hs108|chr17 ( 330) 303 71.5 8.9e-13
CCDS42256.1 TNFSF13 gene_id:8741|Hs108|chr17 ( 247) 299 70.6 1.2e-12
CCDS73957.1 TNFSF13 gene_id:8741|Hs108|chr17 ( 223) 297 70.2 1.5e-12
CCDS56019.1 TNFSF13 gene_id:8741|Hs108|chr17 ( 205) 296 70.0 1.6e-12
CCDS56018.1 TNFSF13 gene_id:8741|Hs108|chr17 ( 222) 296 70.0 1.7e-12
CCDS11112.1 TNFSF13 gene_id:8741|Hs108|chr17 ( 234) 284 67.5 1e-11
>>CCDS9509.1 TNFSF13B gene_id:10673|Hs108|chr13 (285 aa)
initn: 1847 init1: 1847 opt: 1847 Z-score: 2066.7 bits: 390.3 E(32554): 8.5e-109
Smith-Waterman score: 1847; 100.0% identity (100.0% similar) in 285 aa overlap (1-285:1-285)
10 20 30 40 50 60
pF1KE1 MDDSTEREQSRLTSCLKKREEMKLKECVSILPRKESPSVRSSKDGKLLAATLLLALLSCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 MDDSTEREQSRLTSCLKKREEMKLKECVSILPRKESPSVRSSKDGKLLAATLLLALLSCC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 LTVVSFYQVAALQGDLASLRAELQGHHAEKLPAGAGAPKAGLEEAPAVTAGLKIFEPPAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 LTVVSFYQVAALQGDLASLRAELQGHHAEKLPAGAGAPKAGLEEAPAVTAGLKIFEPPAP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 GEGNSSQNSRNKRAVQGPEETVTQDCLQLIADSETPTIQKGSYTFVPWLLSFKRGSALEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 GEGNSSQNSRNKRAVQGPEETVTQDCLQLIADSETPTIQKGSYTFVPWLLSFKRGSALEE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 KENKILVKETGYFFIYGQVLYTDKTYAMGHLIQRKKVHVFGDELSLVTLFRCIQNMPETL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 KENKILVKETGYFFIYGQVLYTDKTYAMGHLIQRKKVHVFGDELSLVTLFRCIQNMPETL
190 200 210 220 230 240
250 260 270 280
pF1KE1 PNNSCYSAGIAKLEEGDELQLAIPRENAQISLDGDVTFFGALKLL
:::::::::::::::::::::::::::::::::::::::::::::
CCDS95 PNNSCYSAGIAKLEEGDELQLAIPRENAQISLDGDVTFFGALKLL
250 260 270 280
>>CCDS45067.1 TNFSF13B gene_id:10673|Hs108|chr13 (266 aa)
initn: 924 init1: 906 opt: 906 Z-score: 1017.1 bits: 196.0 E(32554): 2.5e-50
Smith-Waterman score: 1677; 93.3% identity (93.3% similar) in 285 aa overlap (1-285:1-266)
10 20 30 40 50 60
pF1KE1 MDDSTEREQSRLTSCLKKREEMKLKECVSILPRKESPSVRSSKDGKLLAATLLLALLSCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MDDSTEREQSRLTSCLKKREEMKLKECVSILPRKESPSVRSSKDGKLLAATLLLALLSCC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 LTVVSFYQVAALQGDLASLRAELQGHHAEKLPAGAGAPKAGLEEAPAVTAGLKIFEPPAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LTVVSFYQVAALQGDLASLRAELQGHHAEKLPAGAGAPKAGLEEAPAVTAGLKIFEPPAP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 GEGNSSQNSRNKRAVQGPEETVTQDCLQLIADSETPTIQKGSYTFVPWLLSFKRGSALEE
::::::::::::::::::::: ::::::::::::::::::::
CCDS45 GEGNSSQNSRNKRAVQGPEET-------------------GSYTFVPWLLSFKRGSALEE
130 140 150 160
190 200 210 220 230 240
pF1KE1 KENKILVKETGYFFIYGQVLYTDKTYAMGHLIQRKKVHVFGDELSLVTLFRCIQNMPETL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 KENKILVKETGYFFIYGQVLYTDKTYAMGHLIQRKKVHVFGDELSLVTLFRCIQNMPETL
170 180 190 200 210 220
250 260 270 280
pF1KE1 PNNSCYSAGIAKLEEGDELQLAIPRENAQISLDGDVTFFGALKLL
:::::::::::::::::::::::::::::::::::::::::::::
CCDS45 PNNSCYSAGIAKLEEGDELQLAIPRENAQISLDGDVTFFGALKLL
230 240 250 260
>>CCDS11111.1 TNFSF13 gene_id:8741|Hs108|chr17 (250 aa)
initn: 298 init1: 135 opt: 308 Z-score: 350.2 bits: 72.5 E(32554): 3.5e-13
Smith-Waterman score: 320; 31.3% identity (62.2% similar) in 217 aa overlap (73-284:52-250)
50 60 70 80 90 100
pF1KE1 KDGKLLAATLLLALLSCCLTVVSFYQVAALQGDLASLRAELQGHHAEKLPA--GAGAPKA
: .: ::: :.. .. :. : : :
CCDS11 VREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRREVSRLQGTGGPSQNGEGYPWQ
30 40 50 60 70 80
110 120 130 140 150 160
pF1KE1 GLEEAPAVTAGLKIFEPPAPGEGNSSQNSRNKRAVQGPEETVTQDCLQLIADSETPTIQK
.: : . .:. .: ... ::..::: .. .. :.:. . : . .
CCDS11 SLPEQS--SDALEAWE--------NGERSRKRRAVLTQKQKKQHSVLHLVPINAT-SKDD
90 100 110 120 130
170 180 190 200 210 220
pF1KE1 GSYTFVPWLLSFKRGSALEEKENKILVKETGYFFIYGQVLYTDKTYAMGHLIQRKKVHVF
.. : : : ...:: .:. . . ....: ...:.:::. : :..::....:.
CCDS11 SDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQVVSRE-----
140 150 160 170 180
230 240 250 260 270
pF1KE1 GDELSLVTLFRCIQNMPETLPN---NSCYSAGIAKLEEGDELQLAIPRENAQISLDGDVT
. ::::::..:: . :. :::::::. .:..:: :.. ::: :...:. :
CCDS11 -GQGRQETLFRCIRSMP-SHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSPHGT
190 200 210 220 230 240
280
pF1KE1 FFGALKLL
:.: .::
CCDS11 FLGFVKL
250
>>CCDS11108.1 TNFSF13 gene_id:407977|Hs108|chr17 (330 aa)
initn: 278 init1: 135 opt: 303 Z-score: 342.8 bits: 71.5 E(32554): 8.9e-13
Smith-Waterman score: 303; 33.1% identity (67.5% similar) in 163 aa overlap (125-284:176-330)
100 110 120 130 140 150
pF1KE1 AGAPKAGLEEAPAVTAGLKIFEPPAPGEGNSSQNSRNKRAVQGPEETVTQDCLQLIADSE
... ::..::: .. .. :.:. .
CCDS11 YNRQIGEFIVTRAGLYYLYCQSSDALEAWENGERSRKRRAVLTQKQKKQHSVLHLVPINA
150 160 170 180 190 200
160 170 180 190 200 210
pF1KE1 TPTIQKGSYTFVPWLLSFKRGSALEEKENKILVKETGYFFIYGQVLYTDKTYAMGHLIQR
: . . .. : : : ...:: .:. . . ....: ...:.:::. : :..::....:
CCDS11 T-SKDDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQVVSR
210 220 230 240 250 260
220 230 240 250 260 270
pF1KE1 KKVHVFGDELSLVTLFRCIQNMPETLPN---NSCYSAGIAKLEEGDELQLAIPRENAQIS
. . ::::::..:: . :. :::::::. .:..:: :.. ::: :...
CCDS11 E------GQGRQETLFRCIRSMP-SHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLN
270 280 290 300 310
280
pF1KE1 LDGDVTFFGALKLL
:. ::.: .::
CCDS11 LSPHGTFLGFVKL
320 330
>>CCDS42256.1 TNFSF13 gene_id:8741|Hs108|chr17 (247 aa)
initn: 289 init1: 126 opt: 299 Z-score: 340.2 bits: 70.6 E(32554): 1.2e-12
Smith-Waterman score: 311; 31.0% identity (62.0% similar) in 213 aa overlap (73-280:52-246)
50 60 70 80 90 100
pF1KE1 KDGKLLAATLLLALLSCCLTVVSFYQVAALQGDLASLRAELQGHHAEKLPA--GAGAPKA
: .: ::: :.. .. :. : : :
CCDS42 VREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRREVSRLQGTGGPSQNGEGYPWQ
30 40 50 60 70 80
110 120 130 140 150 160
pF1KE1 GLEEAPAVTAGLKIFEPPAPGEGNSSQNSRNKRAVQGPEETVTQDCLQLIADSETPTIQK
.: : . .:. .: ... ::..::: .. .. :.:. . : . .
CCDS42 SLPEQS--SDALEAWE--------NGERSRKRRAVLTQKQKKQHSVLHLVPINAT-SKDD
90 100 110 120 130
170 180 190 200 210 220
pF1KE1 GSYTFVPWLLSFKRGSALEEKENKILVKETGYFFIYGQVLYTDKTYAMGHLIQRKKVHVF
.. : : : ...:: .:. . . ....: ...:.:::. : :..::....:.
CCDS42 SDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQVVSRE-----
140 150 160 170 180
230 240 250 260 270
pF1KE1 GDELSLVTLFRCIQNMPETLPN---NSCYSAGIAKLEEGDELQLAIPRENAQISLDGDVT
. ::::::..:: . :. :::::::. .:..:: :.. ::: :...:. :
CCDS42 -GQGRQETLFRCIRSMP-SHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSPHGT
190 200 210 220 230 240
280
pF1KE1 FFGALKLL
:.:
CCDS42 FLGL
>>CCDS73957.1 TNFSF13 gene_id:8741|Hs108|chr17 (223 aa)
initn: 295 init1: 135 opt: 297 Z-score: 338.7 bits: 70.2 E(32554): 1.5e-12
Smith-Waterman score: 297; 33.5% identity (66.5% similar) in 167 aa overlap (121-284:67-223)
100 110 120 130 140 150
pF1KE1 LPAGAGAPKAGLEEAPAVTAGLKIFEPPAPGEGNSSQNSRNKRAVQGPEETVTQDCLQLI
: :. :::... . ::. .. :.:.
CCDS73 AALGAVACAMALLTQQTELQSLRREVSRLQGTGGPSQNGEGYPWQSLPEQ--QHSVLHLV
40 50 60 70 80 90
160 170 180 190 200 210
pF1KE1 ADSETPTIQKGSYTFVPWLLSFKRGSALEEKENKILVKETGYFFIYGQVLYTDKTYAMGH
. : . . .. : : : ...:: .:. . . ....: ...:.:::. : :..::.
CCDS73 PINAT-SKDDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQ
100 110 120 130 140 150
220 230 240 250 260
pF1KE1 LIQRKKVHVFGDELSLVTLFRCIQNMPETLPN---NSCYSAGIAKLEEGDELQLAIPREN
...:. . ::::::..:: . :. :::::::. .:..:: :.. :::
CCDS73 VVSRE------GQGRQETLFRCIRSMP-SHPDRAYNSCYSAGVFHLHQGDILSVIIPRAR
160 170 180 190 200
270 280
pF1KE1 AQISLDGDVTFFGALKLL
:...:. ::.: .::
CCDS73 AKLNLSPHGTFLGFVKL
210 220
>>CCDS56019.1 TNFSF13 gene_id:8741|Hs108|chr17 (205 aa)
initn: 295 init1: 135 opt: 296 Z-score: 338.1 bits: 70.0 E(32554): 1.6e-12
Smith-Waterman score: 296; 33.5% identity (66.5% similar) in 167 aa overlap (121-284:50-205)
100 110 120 130 140 150
pF1KE1 LPAGAGAPKAGLEEAPAVTAGLKIFEPPAPGEGNSSQNSRNKRAVQGPEETVTQDCLQLI
: :. :::... . ::. .. :.:.
CCDS56 AALGAVACAMALLTQQTELQSLRREVSRLQGTGGPSQNGEGYPWQSLPEQ---HSVLHLV
20 30 40 50 60 70
160 170 180 190 200 210
pF1KE1 ADSETPTIQKGSYTFVPWLLSFKRGSALEEKENKILVKETGYFFIYGQVLYTDKTYAMGH
. : . . .. : : : ...:: .:. . . ....: ...:.:::. : :..::.
CCDS56 PINAT-SKDDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQ
80 90 100 110 120 130
220 230 240 250 260
pF1KE1 LIQRKKVHVFGDELSLVTLFRCIQNMPETLPN---NSCYSAGIAKLEEGDELQLAIPREN
...:. . ::::::..:: . :. :::::::. .:..:: :.. :::
CCDS56 VVSRE------GQGRQETLFRCIRSMP-SHPDRAYNSCYSAGVFHLHQGDILSVIIPRAR
140 150 160 170 180
270 280
pF1KE1 AQISLDGDVTFFGALKLL
:...:. ::.: .::
CCDS56 AKLNLSPHGTFLGFVKL
190 200
>>CCDS56018.1 TNFSF13 gene_id:8741|Hs108|chr17 (222 aa)
initn: 295 init1: 135 opt: 296 Z-score: 337.6 bits: 70.0 E(32554): 1.7e-12
Smith-Waterman score: 296; 33.5% identity (66.5% similar) in 167 aa overlap (121-284:67-222)
100 110 120 130 140 150
pF1KE1 LPAGAGAPKAGLEEAPAVTAGLKIFEPPAPGEGNSSQNSRNKRAVQGPEETVTQDCLQLI
: :. :::... . ::. .. :.:.
CCDS56 AALGAVACAMALLTQQTELQSLRREVSRLQGTGGPSQNGEGYPWQSLPEQ---HSVLHLV
40 50 60 70 80 90
160 170 180 190 200 210
pF1KE1 ADSETPTIQKGSYTFVPWLLSFKRGSALEEKENKILVKETGYFFIYGQVLYTDKTYAMGH
. : . . .. : : : ...:: .:. . . ....: ...:.:::. : :..::.
CCDS56 PINAT-SKDDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQ
100 110 120 130 140 150
220 230 240 250 260
pF1KE1 LIQRKKVHVFGDELSLVTLFRCIQNMPETLPN---NSCYSAGIAKLEEGDELQLAIPREN
...:. . ::::::..:: . :. :::::::. .:..:: :.. :::
CCDS56 VVSRE------GQGRQETLFRCIRSMP-SHPDRAYNSCYSAGVFHLHQGDILSVIIPRAR
160 170 180 190 200
270 280
pF1KE1 AQISLDGDVTFFGALKLL
:...:. ::.: .::
CCDS56 AKLNLSPHGTFLGFVKL
210 220
>>CCDS11112.1 TNFSF13 gene_id:8741|Hs108|chr17 (234 aa)
initn: 315 init1: 135 opt: 284 Z-score: 323.9 bits: 67.5 E(32554): 1e-11
Smith-Waterman score: 287; 31.8% identity (59.4% similar) in 217 aa overlap (73-284:52-234)
50 60 70 80 90 100
pF1KE1 KDGKLLAATLLLALLSCCLTVVSFYQVAALQGDLASLRAELQGHHAEKLPA--GAGAPKA
: .: ::: :.. .. :. : : :
CCDS11 VREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRREVSRLQGTGGPSQNGEGYPWQ
30 40 50 60 70 80
110 120 130 140 150 160
pF1KE1 GLEEAPAVTAGLKIFEPPAPGEGNSSQNSRNKRAVQGPEETVTQDCLQLIADSETPTIQK
.: : . .:. .: ... ::..::: .:: . ::..
CCDS11 SLPEQS--SDALEAWE--------NGERSRKRRAV------LTQ---KQKNDSDV-----
90 100 110
170 180 190 200 210 220
pF1KE1 GSYTFVPWLLSFKRGSALEEKENKILVKETGYFFIYGQVLYTDKTYAMGHLIQRKKVHVF
: : : ...:: .:. . . ....: ...:.:::. : :..::....:.
CCDS11 ---TEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQVVSRE-----
120 130 140 150 160
230 240 250 260 270
pF1KE1 GDELSLVTLFRCIQNMPETLPN---NSCYSAGIAKLEEGDELQLAIPRENAQISLDGDVT
. ::::::..:: . :. :::::::. .:..:: :.. ::: :...:. :
CCDS11 -GQGRQETLFRCIRSMP-SHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSPHGT
170 180 190 200 210 220
280
pF1KE1 FFGALKLL
:.: .::
CCDS11 FLGFVKL
230
285 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 00:43:55 2016 done: Mon Nov 7 00:43:55 2016
Total Scan time: 2.670 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]