FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1572, 860 aa 1>>>pF1KE1572 860 - 860 aa - 860 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.7084+/-0.00105; mu= 18.1383+/- 0.063 mean_var=65.8408+/-13.213, 0's: 0 Z-trim(103.3): 22 B-trim: 0 in 0/46 Lambda= 0.158062 statistics sampled from 7342 (7352) to 7342 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.585), E-opt: 0.2 (0.226), width: 16 Scan time: 3.910 The best scores are: opt bits E(32554) CCDS2067.1 TGFBRAP1 gene_id:9392|Hs108|chr2 ( 860) 5694 1308.0 0 >>CCDS2067.1 TGFBRAP1 gene_id:9392|Hs108|chr2 (860 aa) initn: 5694 init1: 5694 opt: 5694 Z-score: 7009.0 bits: 1308.0 E(32554): 0 Smith-Waterman score: 5694; 100.0% identity (100.0% similar) in 860 aa overlap (1-860:1-860) 10 20 30 40 50 60 pF1KE1 MMSIKAFTLVSAVERELLMGDKERVNIECVECCGRDLYVGTNDCFVYHFLLEERPVPAGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS20 MMSIKAFTLVSAVERELLMGDKERVNIECVECCGRDLYVGTNDCFVYHFLLEERPVPAGP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 ATFTATKQLQRHLGFKKPVNELRAASALNRLLVLCDNSISLVNMLNLEPVPSGARIKGAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS20 ATFTATKQLQRHLGFKKPVNELRAASALNRLLVLCDNSISLVNMLNLEPVPSGARIKGAA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 TFALNENPVSGDPFCVEVCIISVKRRTIQMFLVYEDRVQIVKEVSTAEQPLAVAVDGHFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS20 TFALNENPVSGDPFCVEVCIISVKRRTIQMFLVYEDRVQIVKEVSTAEQPLAVAVDGHFL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 CLALTTQYIIHNYSTGVSQDLFPYCSEERPPIVKRIGRQEFLLAGPGGLGMFATVAGISQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS20 CLALTTQYIIHNYSTGVSQDLFPYCSEERPPIVKRIGRQEFLLAGPGGLGMFATVAGISQ 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 RAPVHWSENVIGAAVSFPYVIALDDEFITVHSMLDQQQKQTLPFKEGHILQDFEGRVIVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS20 RAPVHWSENVIGAAVSFPYVIALDDEFITVHSMLDQQQKQTLPFKEGHILQDFEGRVIVA 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 TSKGVYILVPLPLEKQIQDLLASRRVEEALVLAKGARRNIPKEKFQVMYRRILQQAGFIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS20 TSKGVYILVPLPLEKQIQDLLASRRVEEALVLAKGARRNIPKEKFQVMYRRILQQAGFIQ 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE1 FAQLQFLEAKELFRSGQLDVRELISLYPFLLPTSSSFTRSHPPLHEYADLNQLTQGDQEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS20 FAQLQFLEAKELFRSGQLDVRELISLYPFLLPTSSSFTRSHPPLHEYADLNQLTQGDQEK 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE1 MAKCKRFLMSYLNEVRSTEVANGYKEDIDTALLKLYAEADHDSLLDLLVTENFCLLTDSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS20 MAKCKRFLMSYLNEVRSTEVANGYKEDIDTALLKLYAEADHDSLLDLLVTENFCLLTDSA 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE1 AWLEKHKKYFALGLLYHYNNQDAAAVQLWVNIVNGDVQDSTRSDLYEYIVDFLTYCLDEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS20 AWLEKHKKYFALGLLYHYNNQDAAAVQLWVNIVNGDVQDSTRSDLYEYIVDFLTYCLDEE 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE1 LVWAYADWVLQKSEEVGVQVFTKRPLDEQQKNSFNPDDIINCLKKYPKALVKYLEHLVID :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS20 LVWAYADWVLQKSEEVGVQVFTKRPLDEQQKNSFNPDDIINCLKKYPKALVKYLEHLVID 550 560 570 580 590 600 610 620 630 640 650 660 pF1KE1 KRLQKEEYHTHLAVLYLEEVLLQRASASGKGAEATETQAKLRRLLQKSDLYRVHFLLERL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS20 KRLQKEEYHTHLAVLYLEEVLLQRASASGKGAEATETQAKLRRLLQKSDLYRVHFLLERL 610 620 630 640 650 660 670 680 690 700 710 720 pF1KE1 QGAGLPMESAILHGKLGEHEKALHILVHELQDFAAAEDYCLWCSEGRDPPHRQQLFHTLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS20 QGAGLPMESAILHGKLGEHEKALHILVHELQDFAAAEDYCLWCSEGRDPPHRQQLFHTLL 670 680 690 700 710 720 730 740 750 760 770 780 pF1KE1 AIYLHAGPTAHELAVAAVDLLNRHATEFDAAQVLQMLPDTWSVQLLCPFLMGAMRDSIHA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS20 AIYLHAGPTAHELAVAAVDLLNRHATEFDAAQVLQMLPDTWSVQLLCPFLMGAMRDSIHA 730 740 750 760 770 780 790 800 810 820 830 840 pF1KE1 RRTMQVALGLARSENLIYTYDKMKLKGSSIQLSDKKLCQICQNPFCEPVFVRYPNGGLVH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS20 RRTMQVALGLARSENLIYTYDKMKLKGSSIQLSDKKLCQICQNPFCEPVFVRYPNGGLVH 790 800 810 820 830 840 850 860 pF1KE1 THCAASRHTNPSSSSPGTRT :::::::::::::::::::: CCDS20 THCAASRHTNPSSSSPGTRT 850 860 860 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 00:45:38 2016 done: Mon Nov 7 00:45:39 2016 Total Scan time: 3.910 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]