FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6112, 135 aa 1>>>pF1KE6112 135 - 135 aa - 135 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9140+/-0.000369; mu= 12.7482+/- 0.023 mean_var=55.4814+/-11.361, 0's: 0 Z-trim(112.1): 34 B-trim: 1021 in 2/50 Lambda= 0.172187 statistics sampled from 20810 (20844) to 20810 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.639), E-opt: 0.2 (0.244), width: 16 Scan time: 2.600 The best scores are: opt bits E(85289) NP_001435 (OMIM: 605168) fatty acid-binding protei ( 135) 896 230.4 6.6e-61 NP_002668 (OMIM: 170715) myelin P2 protein [Homo s ( 132) 499 131.8 3.2e-31 NP_001433 (OMIM: 600434) fatty acid-binding protei ( 132) 468 124.1 6.6e-29 NP_004093 (OMIM: 134651) fatty acid-binding protei ( 133) 438 116.7 1.2e-26 XP_011539309 (OMIM: 134651) PREDICTED: fatty acid- ( 126) 398 106.7 1.1e-23 NP_001437 (OMIM: 602965) fatty acid-binding protei ( 132) 397 106.5 1.3e-23 NP_001305968 (OMIM: 602965) fatty acid-binding pro ( 166) 371 100.1 1.4e-21 NP_001307925 (OMIM: 134651) fatty acid-binding pro ( 144) 339 92.1 3.1e-19 NP_001305971 (OMIM: 602965) fatty acid-binding pro ( 128) 321 87.6 6.3e-18 NP_001186652 (OMIM: 180231) cellular retinoic acid ( 138) 280 77.4 7.8e-15 NP_001869 (OMIM: 180231) cellular retinoic acid-bi ( 138) 280 77.4 7.8e-15 XP_016855832 (OMIM: 180231) PREDICTED: cellular re ( 138) 280 77.4 7.8e-15 NP_004369 (OMIM: 180230) cellular retinoic acid-bi ( 137) 277 76.7 1.3e-14 NP_001305970 (OMIM: 602965) fatty acid-binding pro ( 97) 262 72.9 1.3e-13 NP_002890 (OMIM: 180260) retinol-binding protein 1 ( 197) 234 66.1 2.9e-11 NP_113679 (OMIM: 611866) retinol-binding protein 5 ( 135) 220 62.5 2.4e-10 NP_443192 (OMIM: 608604) retinoid-binding protein ( 134) 205 58.8 3.1e-09 NP_001124465 (OMIM: 180260) retinol-binding protei ( 153) 193 55.8 2.7e-08 NP_001124464 (OMIM: 180260) retinol-binding protei ( 157) 186 54.1 9.3e-08 NP_000125 (OMIM: 134640) fatty acid-binding protei ( 132) 184 53.6 1.1e-07 NP_004155 (OMIM: 180280) retinol-binding protein 2 ( 134) 184 53.6 1.2e-07 XP_016875491 (OMIM: 611866) PREDICTED: retinol-bin ( 126) 167 49.3 2e-06 >>NP_001435 (OMIM: 605168) fatty acid-binding protein, e (135 aa) initn: 896 init1: 896 opt: 896 Z-score: 1214.4 bits: 230.4 E(85289): 6.6e-61 Smith-Waterman score: 896; 100.0% identity (100.0% similar) in 135 aa overlap (1-135:1-135) 10 20 30 40 50 60 pF1KE6 MATVQQLEGRWRLVDSKGFDEYMKELGVGIALRKMGAMAKPDCIITCDGKNLTIKTESTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MATVQQLEGRWRLVDSKGFDEYMKELGVGIALRKMGAMAKPDCIITCDGKNLTIKTESTL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 KTTQFSCTLGEKFEETTADGRKTQTVCNFTDGALVQHQEWDGKESTITRKLKDGKLVVEC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KTTQFSCTLGEKFEETTADGRKTQTVCNFTDGALVQHQEWDGKESTITRKLKDGKLVVEC 70 80 90 100 110 120 130 pF1KE6 VMNNVTCTRIYEKVE ::::::::::::::: NP_001 VMNNVTCTRIYEKVE 130 >>NP_002668 (OMIM: 170715) myelin P2 protein [Homo sapie (132 aa) initn: 499 init1: 499 opt: 499 Z-score: 681.6 bits: 131.8 E(85289): 3.2e-31 Smith-Waterman score: 499; 58.7% identity (84.1% similar) in 126 aa overlap (9-134:7-132) 10 20 30 40 50 60 pF1KE6 MATVQQLEGRWRLVDSKGFDEYMKELGVGIALRKMGAMAKPDCIITCDGKNLTIKTESTL : :.::.:..::.::: ::::.: ::.: .::: ::. : .::.::::. NP_002 MSNKFLGTWKLVSSENFDDYMKALGVGLATRKLGNLAKPTVIISKKGDIITIRTESTF 10 20 30 40 50 70 80 90 100 110 120 pF1KE6 KTTQFSCTLGEKFEETTADGRKTQTVCNFTDGALVQHQEWDGKESTITRKLKDGKLVVEC :.:..: ::..:::::::.:::... .. :.: : :.:::::.:: ::: .::.:.:: NP_002 KNTEISFKLGQEFEETTADNRKTKSIVTLQRGSLNQVQRWDGKETTIKRKLVNGKMVAEC 60 70 80 90 100 110 130 pF1KE6 VMNNVTCTRIYEKVE :..:.:::::::: NP_002 KMKGVVCTRIYEKV 120 130 >>NP_001433 (OMIM: 600434) fatty acid-binding protein, a (132 aa) initn: 467 init1: 443 opt: 468 Z-score: 640.0 bits: 124.1 E(85289): 6.6e-29 Smith-Waterman score: 468; 55.2% identity (85.6% similar) in 125 aa overlap (9-133:7-131) 10 20 30 40 50 60 pF1KE6 MATVQQLEGRWRLVDSKGFDEYMKELGVGIALRKMGAMAKPDCIITCDGKNLTIKTESTL : :.::.:..::.::::.:::.: ::...::::. ::. .: .:::.:::. NP_001 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDVITIKSESTF 10 20 30 40 50 70 80 90 100 110 120 pF1KE6 KTTQFSCTLGEKFEETTADGRKTQTVCNFTDGALVQHQEWDGKESTITRKLKDGKLVVEC :.:..: ::..:.:.::: ::.... .. :.::. :.:::: .:: :: .: :::::: NP_001 KNTEISFILGQEFDEVTADDRKVKSTITLDGGVLVHVQKWDGKSTTIKRKREDDKLVVEC 60 70 80 90 100 110 130 pF1KE6 VMNNVTCTRIYEKVE ::..:: ::.::. NP_001 VMKGVTSTRVYERA 120 130 >>NP_004093 (OMIM: 134651) fatty acid-binding protein, h (133 aa) initn: 438 init1: 438 opt: 438 Z-score: 599.6 bits: 116.7 E(85289): 1.2e-26 Smith-Waterman score: 438; 50.0% identity (80.8% similar) in 130 aa overlap (4-133:2-131) 10 20 30 40 50 60 pF1KE6 MATVQQLEGRWRLVDSKGFDEYMKELGVGIALRKMGAMAKPDCIITCDGKNLTIKTESTL :. . : :.:::::.::.::: ::::.: :....:.:: :: .: ::.::.::. NP_004 MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTF 10 20 30 40 50 70 80 90 100 110 120 pF1KE6 KTTQFSCTLGEKFEETTADGRKTQTVCNFTDGALVQHQEWDGKESTITRKLKDGKLVVEC :.:..: :: .:.::::: ::.... .. : ::. :.:::.:.:..:.: ::::.. NP_004 KNTEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDGKLILTL 60 70 80 90 100 110 130 pF1KE6 VMNNVTCTRIYEKVE . ....::: ::: NP_004 THGTAVCTRTYEKEA 120 130 >>XP_011539309 (OMIM: 134651) PREDICTED: fatty acid-bind (126 aa) initn: 403 init1: 371 opt: 398 Z-score: 546.3 bits: 106.7 E(85289): 1.1e-23 Smith-Waterman score: 398; 51.3% identity (81.7% similar) in 115 aa overlap (4-118:2-116) 10 20 30 40 50 60 pF1KE6 MATVQQLEGRWRLVDSKGFDEYMKELGVGIALRKMGAMAKPDCIITCDGKNLTIKTESTL :. . : :.:::::.::.::: ::::.: :....:.:: :: .: ::.::.::. XP_011 MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTF 10 20 30 40 50 70 80 90 100 110 120 pF1KE6 KTTQFSCTLGEKFEETTADGRKTQTVCNFTDGALVQHQEWDGKESTITRKLKDGKLVVEC :.:..: :: .:.::::: ::.... .. : ::. :.:::.:.:..:.: ::::.. XP_011 KNTEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDGKLILME 60 70 80 90 100 110 130 pF1KE6 VMNNVTCTRIYEKVE XP_011 KLQLRNVK 120 >>NP_001437 (OMIM: 602965) fatty acid-binding protein, b (132 aa) initn: 397 init1: 397 opt: 397 Z-score: 544.6 bits: 106.5 E(85289): 1.3e-23 Smith-Waterman score: 397; 45.4% identity (80.8% similar) in 130 aa overlap (4-133:2-131) 10 20 30 40 50 60 pF1KE6 MATVQQLEGRWRLVDSKGFDEYMKELGVGIALRKMGAMAKPDCIITCDGKNLTIKTESTL :. . . :.:..:..:::::: ::::.: :..: ..:: ::. .: ...:.: ::. NP_001 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTF 10 20 30 40 50 70 80 90 100 110 120 pF1KE6 KTTQFSCTLGEKFEETTADGRKTQTVCNFTDGALVQHQEWDGKESTITRKLKDGKLVVEC :.:..: :::.:.::::: :. ..: .. ::. :.:::::....:..::::.:. NP_001 KNTEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTL 60 70 80 90 100 110 130 pF1KE6 VMNNVTCTRIYEKVE ....:. .: ::: NP_001 TFGDVVAVRHYEKA 120 130 >>NP_001305968 (OMIM: 602965) fatty acid-binding protein (166 aa) initn: 368 init1: 336 opt: 371 Z-score: 508.2 bits: 100.1 E(85289): 1.4e-21 Smith-Waterman score: 371; 47.0% identity (81.7% similar) in 115 aa overlap (4-118:2-116) 10 20 30 40 50 60 pF1KE6 MATVQQLEGRWRLVDSKGFDEYMKELGVGIALRKMGAMAKPDCIITCDGKNLTIKTESTL :. . . :.:..:..:::::: ::::.: :..: ..:: ::. .: ...:.: ::. NP_001 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTF 10 20 30 40 50 70 80 90 100 110 120 pF1KE6 KTTQFSCTLGEKFEETTADGRKTQTVCNFTDGALVQHQEWDGKESTITRKLKDGKLVVEC :.:..: :::.:.::::: :. ..: .. ::. :.:::::....:..::::.:. NP_001 KNTEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMVS 60 70 80 90 100 110 130 pF1KE6 VMNNVTCTRIYEKVE NP_001 NDNSPFFLVFFSSPHTSHLLPSSSLLLPFFLLPSFFNNTSLARFFNYM 120 130 140 150 160 >>NP_001307925 (OMIM: 134651) fatty acid-binding protein (144 aa) initn: 424 init1: 339 opt: 339 Z-score: 466.2 bits: 92.1 E(85289): 3.1e-19 Smith-Waterman score: 406; 46.1% identity (74.5% similar) in 141 aa overlap (4-133:2-142) 10 20 30 40 pF1KE6 MATVQQLEGRWRLVDSKGFDEYMKEL-----------GVGIALRKMGAMAKPDCIITCDG :. . : :.:::::.::.::: : :::.: :....:.:: :: .: NP_001 MVDAFLGTWKLVDSKNFDDYMKSLAHILITFPLPSGVGFATRQVASMTKPTTIIEKNG 10 20 30 40 50 50 60 70 80 90 100 pF1KE6 KNLTIKTESTLKTTQFSCTLGEKFEETTADGRKTQTVCNFTDGALVQHQEWDGKESTITR ::.::.::.:.:..: :: .:.::::: ::.... .. : ::. :.:::.:.:..: NP_001 DILTLKTHSTFKNTEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVR 60 70 80 90 100 110 110 120 130 pF1KE6 KLKDGKLVVECVMNNVTCTRIYEKVE .: ::::.. . ....::: ::: NP_001 ELIDGKLILTLTHGTAVCTRTYEKEA 120 130 140 >>NP_001305971 (OMIM: 602965) fatty acid-binding protein (128 aa) initn: 316 init1: 316 opt: 321 Z-score: 442.8 bits: 87.6 E(85289): 6.3e-18 Smith-Waterman score: 321; 40.8% identity (73.1% similar) in 130 aa overlap (4-133:1-127) 10 20 30 40 50 60 pF1KE6 MATVQQLEGRWRLVDSKGFDEYMKELGVGIALRKMGAMAKPDCIITCDGKNLTIKTESTL .: : :: : . .. :::.: :..: ..:: ::. .: ...:.: ::. NP_001 MQLKEKDWR---SALIKTANQQKGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTF 10 20 30 40 50 70 80 90 100 110 120 pF1KE6 KTTQFSCTLGEKFEETTADGRKTQTVCNFTDGALVQHQEWDGKESTITRKLKDGKLVVEC :.:..: :::.:.::::: :. ..: .. ::. :.:::::....:..::::.:. NP_001 KNTEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTL 60 70 80 90 100 110 130 pF1KE6 VMNNVTCTRIYEKVE ....:. .: ::: NP_001 TFGDVVAVRHYEKA 120 >>NP_001186652 (OMIM: 180231) cellular retinoic acid-bin (138 aa) initn: 206 init1: 120 opt: 280 Z-score: 387.3 bits: 77.4 E(85289): 7.8e-15 Smith-Waterman score: 280; 35.4% identity (73.1% similar) in 130 aa overlap (9-131:6-135) 10 20 30 40 50 pF1KE6 MATVQQLEGRWRLVDSKGFDEYMKELGVGIALRKMG--AMAKPDCIITCDGKNLTIKTES : :... :..:.: .: :::.. :::.. : .:: : .: .. ::: . NP_001 MPNFSGNWKIIRSENFEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKTST 10 20 30 40 50 60 70 80 90 100 110 pF1KE6 TLKTTQFSCTLGEKFEETTADGRKTQTVCNF-TDGALVQHQEW---DGKESTITRKL-KD :..::... .::.::: :.::: ... .. ... .: .:. .: ... ::.: .: NP_001 TVRTTEINFKVGEEFEEQTVDGRPCKSLVKWESENKMVCEQKLLKGEGPKTSWTRELTND 60 70 80 90 100 110 120 130 pF1KE6 GKLVVECVMNNVTCTRIYEKVE :.:.. . ..:.:::.: NP_001 GELILTMTADDVVCTRVYVRE 120 130 135 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 09:32:56 2016 done: Tue Nov 8 09:32:57 2016 Total Scan time: 2.600 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]