FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5205, 240 aa 1>>>pF1KE5205 240 - 240 aa - 240 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.5668+/-0.000321; mu= 1.0639+/- 0.020 mean_var=201.0454+/-40.525, 0's: 0 Z-trim(123.3): 39 B-trim: 1438 in 1/59 Lambda= 0.090454 statistics sampled from 42776 (42816) to 42776 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.809), E-opt: 0.2 (0.502), width: 16 Scan time: 6.310 The best scores are: opt bits E(85289) NP_004485 (OMIM: 600339) hepatoma-derived growth f ( 240) 1621 222.9 3.9e-58 NP_001119522 (OMIM: 600339) hepatoma-derived growt ( 256) 1413 195.8 6e-50 NP_001119523 (OMIM: 600339) hepatoma-derived growt ( 233) 1408 195.1 8.8e-50 NP_001306117 (OMIM: 600339) hepatoma-derived growt ( 208) 1387 192.3 5.4e-49 NP_001306116 (OMIM: 600339) hepatoma-derived growt ( 208) 1387 192.3 5.4e-49 XP_011507757 (OMIM: 600339) PREDICTED: hepatoma-de ( 208) 1387 192.3 5.4e-49 XP_011507755 (OMIM: 600339) PREDICTED: hepatoma-de ( 208) 1387 192.3 5.4e-49 XP_011507756 (OMIM: 600339) PREDICTED: hepatoma-de ( 208) 1387 192.3 5.4e-49 NP_001306115 (OMIM: 600339) hepatoma-derived growt ( 263) 1389 192.7 5.4e-49 NP_057157 (OMIM: 616643) hepatoma-derived growth f ( 203) 624 92.8 5e-19 XP_006720617 (OMIM: 616643) PREDICTED: hepatoma-de ( 212) 624 92.8 5.2e-19 NP_001304829 (OMIM: 603620) PC4 and SFRS1-interact ( 324) 601 89.9 5.7e-18 NP_001304827 (OMIM: 603620) PC4 and SFRS1-interact ( 329) 576 86.6 5.6e-17 NP_066967 (OMIM: 603620) PC4 and SFRS1-interacting ( 333) 576 86.6 5.6e-17 NP_001121689 (OMIM: 603620) PC4 and SFRS1-interact ( 530) 576 86.8 8.1e-17 NP_150091 (OMIM: 603620) PC4 and SFRS1-interacting ( 530) 576 86.8 8.1e-17 >>NP_004485 (OMIM: 600339) hepatoma-derived growth facto (240 aa) initn: 1621 init1: 1621 opt: 1621 Z-score: 1164.7 bits: 222.9 E(85289): 3.9e-58 Smith-Waterman score: 1621; 100.0% identity (100.0% similar) in 240 aa overlap (1-240:1-240) 10 20 30 40 50 60 pF1KE5 MSRSNRQKEYKCGDLVFAKMKGYPHWPARIDEMPEAAVKSTANKYQVFFFGTHETAFLGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 MSRSNRQKEYKCGDLVFAKMKGYPHWPARIDEMPEAAVKSTANKYQVFFFGTHETAFLGP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 KDLFPYEESKEKFGKPNKRKGFSEGLWEIENNPTVKASGYQSSQKKSCVEEPEPEPEAAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 KDLFPYEESKEKFGKPNKRKGFSEGLWEIENNPTVKASGYQSSQKKSCVEEPEPEPEAAE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 GDGDKKGNAEGSSDEEGKLVIDEPAKEKNEKGALKRRAGDLLEDSPKRPKEAENPEGEEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 GDGDKKGNAEGSSDEEGKLVIDEPAKEKNEKGALKRRAGDLLEDSPKRPKEAENPEGEEK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 EAATLEVERPLPMEVEKNSTPSEPGSGRGPPQEEEEEEDEEEEATKEDAEAPGIRDHESL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 EAATLEVERPLPMEVEKNSTPSEPGSGRGPPQEEEEEEDEEEEATKEDAEAPGIRDHESL 190 200 210 220 230 240 >>NP_001119522 (OMIM: 600339) hepatoma-derived growth fa (256 aa) initn: 1413 init1: 1413 opt: 1413 Z-score: 1017.7 bits: 195.8 E(85289): 6e-50 Smith-Waterman score: 1413; 99.1% identity (99.1% similar) in 214 aa overlap (27-240:43-256) 10 20 30 40 50 pF1KE5 MSRSNRQKEYKCGDLVFAKMKGYPHWPARIDEMPEAAVKSTANKYQVFFFGTHETA : ::::::::::::::::::::::::::: NP_001 LGHLLATKLKRFLLSKGGRRAQIPDVSRATPHTIDEMPEAAVKSTANKYQVFFFGTHETA 20 30 40 50 60 70 60 70 80 90 100 110 pF1KE5 FLGPKDLFPYEESKEKFGKPNKRKGFSEGLWEIENNPTVKASGYQSSQKKSCVEEPEPEP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 FLGPKDLFPYEESKEKFGKPNKRKGFSEGLWEIENNPTVKASGYQSSQKKSCVEEPEPEP 80 90 100 110 120 130 120 130 140 150 160 170 pF1KE5 EAAEGDGDKKGNAEGSSDEEGKLVIDEPAKEKNEKGALKRRAGDLLEDSPKRPKEAENPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EAAEGDGDKKGNAEGSSDEEGKLVIDEPAKEKNEKGALKRRAGDLLEDSPKRPKEAENPE 140 150 160 170 180 190 180 190 200 210 220 230 pF1KE5 GEEKEAATLEVERPLPMEVEKNSTPSEPGSGRGPPQEEEEEEDEEEEATKEDAEAPGIRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GEEKEAATLEVERPLPMEVEKNSTPSEPGSGRGPPQEEEEEEDEEEEATKEDAEAPGIRD 200 210 220 230 240 250 240 pF1KE5 HESL :::: NP_001 HESL >>NP_001119523 (OMIM: 600339) hepatoma-derived growth fa (233 aa) initn: 1408 init1: 1408 opt: 1408 Z-score: 1014.7 bits: 195.1 E(85289): 8.8e-50 Smith-Waterman score: 1408; 99.5% identity (99.5% similar) in 213 aa overlap (28-240:21-233) 10 20 30 40 50 60 pF1KE5 MSRSNRQKEYKCGDLVFAKMKGYPHWPARIDEMPEAAVKSTANKYQVFFFGTHETAFLGP : ::::::::::::::::::::::::::::::: NP_001 MEQRAGGNRVQTSTLNCAGAAVIDEMPEAAVKSTANKYQVFFFGTHETAFLGP 10 20 30 40 50 70 80 90 100 110 120 pF1KE5 KDLFPYEESKEKFGKPNKRKGFSEGLWEIENNPTVKASGYQSSQKKSCVEEPEPEPEAAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KDLFPYEESKEKFGKPNKRKGFSEGLWEIENNPTVKASGYQSSQKKSCVEEPEPEPEAAE 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE5 GDGDKKGNAEGSSDEEGKLVIDEPAKEKNEKGALKRRAGDLLEDSPKRPKEAENPEGEEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GDGDKKGNAEGSSDEEGKLVIDEPAKEKNEKGALKRRAGDLLEDSPKRPKEAENPEGEEK 120 130 140 150 160 170 190 200 210 220 230 240 pF1KE5 EAATLEVERPLPMEVEKNSTPSEPGSGRGPPQEEEEEEDEEEEATKEDAEAPGIRDHESL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EAATLEVERPLPMEVEKNSTPSEPGSGRGPPQEEEEEEDEEEEATKEDAEAPGIRDHESL 180 190 200 210 220 230 >>NP_001306117 (OMIM: 600339) hepatoma-derived growth fa (208 aa) initn: 1387 init1: 1387 opt: 1387 Z-score: 1000.6 bits: 192.3 E(85289): 5.4e-49 Smith-Waterman score: 1387; 100.0% identity (100.0% similar) in 208 aa overlap (33-240:1-208) 10 20 30 40 50 60 pF1KE5 RSNRQKEYKCGDLVFAKMKGYPHWPARIDEMPEAAVKSTANKYQVFFFGTHETAFLGPKD :::::::::::::::::::::::::::::: NP_001 MPEAAVKSTANKYQVFFFGTHETAFLGPKD 10 20 30 70 80 90 100 110 120 pF1KE5 LFPYEESKEKFGKPNKRKGFSEGLWEIENNPTVKASGYQSSQKKSCVEEPEPEPEAAEGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LFPYEESKEKFGKPNKRKGFSEGLWEIENNPTVKASGYQSSQKKSCVEEPEPEPEAAEGD 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE5 GDKKGNAEGSSDEEGKLVIDEPAKEKNEKGALKRRAGDLLEDSPKRPKEAENPEGEEKEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GDKKGNAEGSSDEEGKLVIDEPAKEKNEKGALKRRAGDLLEDSPKRPKEAENPEGEEKEA 100 110 120 130 140 150 190 200 210 220 230 240 pF1KE5 ATLEVERPLPMEVEKNSTPSEPGSGRGPPQEEEEEEDEEEEATKEDAEAPGIRDHESL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ATLEVERPLPMEVEKNSTPSEPGSGRGPPQEEEEEEDEEEEATKEDAEAPGIRDHESL 160 170 180 190 200 >>NP_001306116 (OMIM: 600339) hepatoma-derived growth fa (208 aa) initn: 1387 init1: 1387 opt: 1387 Z-score: 1000.6 bits: 192.3 E(85289): 5.4e-49 Smith-Waterman score: 1387; 100.0% identity (100.0% similar) in 208 aa overlap (33-240:1-208) 10 20 30 40 50 60 pF1KE5 RSNRQKEYKCGDLVFAKMKGYPHWPARIDEMPEAAVKSTANKYQVFFFGTHETAFLGPKD :::::::::::::::::::::::::::::: NP_001 MPEAAVKSTANKYQVFFFGTHETAFLGPKD 10 20 30 70 80 90 100 110 120 pF1KE5 LFPYEESKEKFGKPNKRKGFSEGLWEIENNPTVKASGYQSSQKKSCVEEPEPEPEAAEGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LFPYEESKEKFGKPNKRKGFSEGLWEIENNPTVKASGYQSSQKKSCVEEPEPEPEAAEGD 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE5 GDKKGNAEGSSDEEGKLVIDEPAKEKNEKGALKRRAGDLLEDSPKRPKEAENPEGEEKEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GDKKGNAEGSSDEEGKLVIDEPAKEKNEKGALKRRAGDLLEDSPKRPKEAENPEGEEKEA 100 110 120 130 140 150 190 200 210 220 230 240 pF1KE5 ATLEVERPLPMEVEKNSTPSEPGSGRGPPQEEEEEEDEEEEATKEDAEAPGIRDHESL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ATLEVERPLPMEVEKNSTPSEPGSGRGPPQEEEEEEDEEEEATKEDAEAPGIRDHESL 160 170 180 190 200 >>XP_011507757 (OMIM: 600339) PREDICTED: hepatoma-derive (208 aa) initn: 1387 init1: 1387 opt: 1387 Z-score: 1000.6 bits: 192.3 E(85289): 5.4e-49 Smith-Waterman score: 1387; 100.0% identity (100.0% similar) in 208 aa overlap (33-240:1-208) 10 20 30 40 50 60 pF1KE5 RSNRQKEYKCGDLVFAKMKGYPHWPARIDEMPEAAVKSTANKYQVFFFGTHETAFLGPKD :::::::::::::::::::::::::::::: XP_011 MPEAAVKSTANKYQVFFFGTHETAFLGPKD 10 20 30 70 80 90 100 110 120 pF1KE5 LFPYEESKEKFGKPNKRKGFSEGLWEIENNPTVKASGYQSSQKKSCVEEPEPEPEAAEGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 LFPYEESKEKFGKPNKRKGFSEGLWEIENNPTVKASGYQSSQKKSCVEEPEPEPEAAEGD 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE5 GDKKGNAEGSSDEEGKLVIDEPAKEKNEKGALKRRAGDLLEDSPKRPKEAENPEGEEKEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GDKKGNAEGSSDEEGKLVIDEPAKEKNEKGALKRRAGDLLEDSPKRPKEAENPEGEEKEA 100 110 120 130 140 150 190 200 210 220 230 240 pF1KE5 ATLEVERPLPMEVEKNSTPSEPGSGRGPPQEEEEEEDEEEEATKEDAEAPGIRDHESL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 ATLEVERPLPMEVEKNSTPSEPGSGRGPPQEEEEEEDEEEEATKEDAEAPGIRDHESL 160 170 180 190 200 >>XP_011507755 (OMIM: 600339) PREDICTED: hepatoma-derive (208 aa) initn: 1387 init1: 1387 opt: 1387 Z-score: 1000.6 bits: 192.3 E(85289): 5.4e-49 Smith-Waterman score: 1387; 100.0% identity (100.0% similar) in 208 aa overlap (33-240:1-208) 10 20 30 40 50 60 pF1KE5 RSNRQKEYKCGDLVFAKMKGYPHWPARIDEMPEAAVKSTANKYQVFFFGTHETAFLGPKD :::::::::::::::::::::::::::::: XP_011 MPEAAVKSTANKYQVFFFGTHETAFLGPKD 10 20 30 70 80 90 100 110 120 pF1KE5 LFPYEESKEKFGKPNKRKGFSEGLWEIENNPTVKASGYQSSQKKSCVEEPEPEPEAAEGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 LFPYEESKEKFGKPNKRKGFSEGLWEIENNPTVKASGYQSSQKKSCVEEPEPEPEAAEGD 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE5 GDKKGNAEGSSDEEGKLVIDEPAKEKNEKGALKRRAGDLLEDSPKRPKEAENPEGEEKEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GDKKGNAEGSSDEEGKLVIDEPAKEKNEKGALKRRAGDLLEDSPKRPKEAENPEGEEKEA 100 110 120 130 140 150 190 200 210 220 230 240 pF1KE5 ATLEVERPLPMEVEKNSTPSEPGSGRGPPQEEEEEEDEEEEATKEDAEAPGIRDHESL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 ATLEVERPLPMEVEKNSTPSEPGSGRGPPQEEEEEEDEEEEATKEDAEAPGIRDHESL 160 170 180 190 200 >>XP_011507756 (OMIM: 600339) PREDICTED: hepatoma-derive (208 aa) initn: 1387 init1: 1387 opt: 1387 Z-score: 1000.6 bits: 192.3 E(85289): 5.4e-49 Smith-Waterman score: 1387; 100.0% identity (100.0% similar) in 208 aa overlap (33-240:1-208) 10 20 30 40 50 60 pF1KE5 RSNRQKEYKCGDLVFAKMKGYPHWPARIDEMPEAAVKSTANKYQVFFFGTHETAFLGPKD :::::::::::::::::::::::::::::: XP_011 MPEAAVKSTANKYQVFFFGTHETAFLGPKD 10 20 30 70 80 90 100 110 120 pF1KE5 LFPYEESKEKFGKPNKRKGFSEGLWEIENNPTVKASGYQSSQKKSCVEEPEPEPEAAEGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 LFPYEESKEKFGKPNKRKGFSEGLWEIENNPTVKASGYQSSQKKSCVEEPEPEPEAAEGD 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE5 GDKKGNAEGSSDEEGKLVIDEPAKEKNEKGALKRRAGDLLEDSPKRPKEAENPEGEEKEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GDKKGNAEGSSDEEGKLVIDEPAKEKNEKGALKRRAGDLLEDSPKRPKEAENPEGEEKEA 100 110 120 130 140 150 190 200 210 220 230 240 pF1KE5 ATLEVERPLPMEVEKNSTPSEPGSGRGPPQEEEEEEDEEEEATKEDAEAPGIRDHESL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 ATLEVERPLPMEVEKNSTPSEPGSGRGPPQEEEEEEDEEEEATKEDAEAPGIRDHESL 160 170 180 190 200 >>NP_001306115 (OMIM: 600339) hepatoma-derived growth fa (263 aa) initn: 925 init1: 925 opt: 1389 Z-score: 1000.6 bits: 192.7 E(85289): 5.4e-49 Smith-Waterman score: 1389; 95.9% identity (95.9% similar) in 221 aa overlap (27-240:43-263) 10 20 30 40 50 pF1KE5 MSRSNRQKEYKCGDLVFAKMKGYPHWPARIDEMPEAAVKSTANKYQVFFFGTHETA : ::::::::::::::::::::::::::: NP_001 LGHLLATKLKRFLLSKGGRRAQIPDVSRATPHTIDEMPEAAVKSTANKYQVFFFGTHETA 20 30 40 50 60 70 60 70 80 90 100 pF1KE5 FLGPKDLFPYEESKEKFGKPNKRKGFSEGLWEIENNPTVKASGYQ-------SSQKKSCV ::::::::::::::::::::::::::::::::::::::::::::: :::::::: NP_001 FLGPKDLFPYEESKEKFGKPNKRKGFSEGLWEIENNPTVKASGYQPVLSLLQSSQKKSCV 80 90 100 110 120 130 110 120 130 140 150 160 pF1KE5 EEPEPEPEAAEGDGDKKGNAEGSSDEEGKLVIDEPAKEKNEKGALKRRAGDLLEDSPKRP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EEPEPEPEAAEGDGDKKGNAEGSSDEEGKLVIDEPAKEKNEKGALKRRAGDLLEDSPKRP 140 150 160 170 180 190 170 180 190 200 210 220 pF1KE5 KEAENPEGEEKEAATLEVERPLPMEVEKNSTPSEPGSGRGPPQEEEEEEDEEEEATKEDA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KEAENPEGEEKEAATLEVERPLPMEVEKNSTPSEPGSGRGPPQEEEEEEDEEEEATKEDA 200 210 220 230 240 250 230 240 pF1KE5 EAPGIRDHESL ::::::::::: NP_001 EAPGIRDHESL 260 >>NP_057157 (OMIM: 616643) hepatoma-derived growth facto (203 aa) initn: 636 init1: 576 opt: 624 Z-score: 462.6 bits: 92.8 E(85289): 5e-19 Smith-Waterman score: 661; 51.5% identity (69.6% similar) in 227 aa overlap (1-225:1-203) 10 20 30 40 50 60 pF1KE5 MSRSNRQKEYKCGDLVFAKMKGYPHWPARIDEMPEAAVKSTANKYQVFFFGTHETAFLGP :.: : .::: ::::::::::::::::::::.::.::: :::: .::::::::::::: NP_057 MARP-RPREYKAGDLVFAKMKGYPHWPARIDELPEGAVKPPANKYPIFFFGTHETAFLGP 10 20 30 40 50 70 80 90 100 110 120 pF1KE5 KDLFPYEESKEKFGKPNKRKGFSEGLWEIENNPTVKASGYQSSQKKSCVEEPEPEPEAAE ::::::.: :.:::: ::::::.:::::::::: :: .:::. :..: : .: NP_057 KDLFPYKEYKDKFGKSNKRKGFNEGLWEIENNPGVKFTGYQAIQQQSSSE--------TE 60 70 80 90 100 110 130 140 150 160 170 pF1KE5 GDGDKKGN-AEGSSDEEGKLVI-DEPAKEKNEKGALKRRAGDLLEDSPKRPKEAENPEGE :.: :: :..::.::: : : .:.::::.. ::. . : : :.... :. NP_057 GEG---GNTADASSEEEGDRVEEDGKGKRKNEKAGSKRKKS---YTSKKSSKQSRKSPGD 120 130 140 150 160 180 190 200 210 220 230 pF1KE5 EKEAATLEVERPLPMEVEKNSTPSEPGSGRGPPQEEEEEEDEEEEATKEDAEAPGIRDHE : . : :.:.. :: :.. . .. . .. :.: NP_057 EDDKDCKE---------EENKSSSEGGDAGNDTRNTTSDLQKTSEGT 170 180 190 200 240 pF1KE5 SL 240 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 07:22:47 2016 done: Tue Nov 8 07:22:48 2016 Total Scan time: 6.310 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]