Result of FASTA (omim) for
pFN21AE1421
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1421, 482 aa
1>>>pF1KE1421 482 - 482 aa - 482 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.9242+/-0.000314; mu= 16.4514+/- 0.020
mean_var=94.3540+/-18.989, 0's: 0 Z-trim(118.3): 13 B-trim: 498 in 2/55
Lambda= 0.132036
statistics sampled from 31090 (31103) to 31090 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.715), E-opt: 0.2 (0.365), width: 16
Scan time: 10.360
The best scores are: opt bits E(85289)
NP_001944 (OMIM: 131222,603041) thymidine phosphor ( 482) 3163 612.5 8.1e-175
NP_001107227 (OMIM: 131222,603041) thymidine phosp ( 482) 3163 612.5 8.1e-175
NP_001107228 (OMIM: 131222,603041) thymidine phosp ( 482) 3163 612.5 8.1e-175
NP_001244917 (OMIM: 131222,603041) thymidine phosp ( 482) 3163 612.5 8.1e-175
NP_001244918 (OMIM: 131222,603041) thymidine phosp ( 487) 3143 608.7 1.1e-173
>>NP_001944 (OMIM: 131222,603041) thymidine phosphorylas (482 aa)
initn: 3163 init1: 3163 opt: 3163 Z-score: 3259.5 bits: 612.5 E(85289): 8.1e-175
Smith-Waterman score: 3163; 100.0% identity (100.0% similar) in 482 aa overlap (1-482:1-482)
10 20 30 40 50 60
pF1KE1 MAALMTPGTGAPPAPGDFSGEGSQGLPDPSPEPKQLPELIRMKRDGGRLSEADIRGFVAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAALMTPGTGAPPAPGDFSGEGSQGLPDPSPEPKQLPELIRMKRDGGRLSEADIRGFVAA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 VVNGSAQGAQIGAMLMAIRLRGMDLEETSVLTQALAQSGQQLEWPEAWRQQLVDKHSTGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VVNGSAQGAQIGAMLMAIRLRGMDLEETSVLTQALAQSGQQLEWPEAWRQQLVDKHSTGG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 VGDKVSLVLAPALAACGCKVPMISGRGLGHTGGTLDKLESIPGFNVIQSPEQMQVLLDQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VGDKVSLVLAPALAACGCKVPMISGRGLGHTGGTLDKLESIPGFNVIQSPEQMQVLLDQA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 GCCIVGQSEQLVPADGILYAARDVTATVDSLPLITASILSKKLVEGLSALVVDVKFGGAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GCCIVGQSEQLVPADGILYAARDVTATVDSLPLITASILSKKLVEGLSALVVDVKFGGAA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 VFPNQEQARELAKTLVGVGASLGLRVAAALTAMDKPLGRCVGHALEVEEALLCMDGAGPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VFPNQEQARELAKTLVGVGASLGLRVAAALTAMDKPLGRCVGHALEVEEALLCMDGAGPP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 DLRDLVTTLGGALLWLSGHAGTQAQGAARVAAALDDGSALGRFERMLAAQGVDPGLARAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DLRDLVTTLGGALLWLSGHAGTQAQGAARVAAALDDGSALGRFERMLAAQGVDPGLARAL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 CSGSPAERRQLLPRAREQEELLAPADGTVELVRALPLALVLHELGAGRSRAGEPLRLGVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CSGSPAERRQLLPRAREQEELLAPADGTVELVRALPLALVLHELGAGRSRAGEPLRLGVG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE1 AELLVDVGQRLRRGTPWLRVHRDGPALSGPQSRALQEALVLSDRAPFAAPSPFAELVLPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AELLVDVGQRLRRGTPWLRVHRDGPALSGPQSRALQEALVLSDRAPFAAPSPFAELVLPP
430 440 450 460 470 480
pF1KE1 QQ
::
NP_001 QQ
>>NP_001107227 (OMIM: 131222,603041) thymidine phosphory (482 aa)
initn: 3163 init1: 3163 opt: 3163 Z-score: 3259.5 bits: 612.5 E(85289): 8.1e-175
Smith-Waterman score: 3163; 100.0% identity (100.0% similar) in 482 aa overlap (1-482:1-482)
10 20 30 40 50 60
pF1KE1 MAALMTPGTGAPPAPGDFSGEGSQGLPDPSPEPKQLPELIRMKRDGGRLSEADIRGFVAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAALMTPGTGAPPAPGDFSGEGSQGLPDPSPEPKQLPELIRMKRDGGRLSEADIRGFVAA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 VVNGSAQGAQIGAMLMAIRLRGMDLEETSVLTQALAQSGQQLEWPEAWRQQLVDKHSTGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VVNGSAQGAQIGAMLMAIRLRGMDLEETSVLTQALAQSGQQLEWPEAWRQQLVDKHSTGG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 VGDKVSLVLAPALAACGCKVPMISGRGLGHTGGTLDKLESIPGFNVIQSPEQMQVLLDQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VGDKVSLVLAPALAACGCKVPMISGRGLGHTGGTLDKLESIPGFNVIQSPEQMQVLLDQA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 GCCIVGQSEQLVPADGILYAARDVTATVDSLPLITASILSKKLVEGLSALVVDVKFGGAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GCCIVGQSEQLVPADGILYAARDVTATVDSLPLITASILSKKLVEGLSALVVDVKFGGAA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 VFPNQEQARELAKTLVGVGASLGLRVAAALTAMDKPLGRCVGHALEVEEALLCMDGAGPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VFPNQEQARELAKTLVGVGASLGLRVAAALTAMDKPLGRCVGHALEVEEALLCMDGAGPP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 DLRDLVTTLGGALLWLSGHAGTQAQGAARVAAALDDGSALGRFERMLAAQGVDPGLARAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DLRDLVTTLGGALLWLSGHAGTQAQGAARVAAALDDGSALGRFERMLAAQGVDPGLARAL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 CSGSPAERRQLLPRAREQEELLAPADGTVELVRALPLALVLHELGAGRSRAGEPLRLGVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CSGSPAERRQLLPRAREQEELLAPADGTVELVRALPLALVLHELGAGRSRAGEPLRLGVG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE1 AELLVDVGQRLRRGTPWLRVHRDGPALSGPQSRALQEALVLSDRAPFAAPSPFAELVLPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AELLVDVGQRLRRGTPWLRVHRDGPALSGPQSRALQEALVLSDRAPFAAPSPFAELVLPP
430 440 450 460 470 480
pF1KE1 QQ
::
NP_001 QQ
>>NP_001107228 (OMIM: 131222,603041) thymidine phosphory (482 aa)
initn: 3163 init1: 3163 opt: 3163 Z-score: 3259.5 bits: 612.5 E(85289): 8.1e-175
Smith-Waterman score: 3163; 100.0% identity (100.0% similar) in 482 aa overlap (1-482:1-482)
10 20 30 40 50 60
pF1KE1 MAALMTPGTGAPPAPGDFSGEGSQGLPDPSPEPKQLPELIRMKRDGGRLSEADIRGFVAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAALMTPGTGAPPAPGDFSGEGSQGLPDPSPEPKQLPELIRMKRDGGRLSEADIRGFVAA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 VVNGSAQGAQIGAMLMAIRLRGMDLEETSVLTQALAQSGQQLEWPEAWRQQLVDKHSTGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VVNGSAQGAQIGAMLMAIRLRGMDLEETSVLTQALAQSGQQLEWPEAWRQQLVDKHSTGG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 VGDKVSLVLAPALAACGCKVPMISGRGLGHTGGTLDKLESIPGFNVIQSPEQMQVLLDQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VGDKVSLVLAPALAACGCKVPMISGRGLGHTGGTLDKLESIPGFNVIQSPEQMQVLLDQA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 GCCIVGQSEQLVPADGILYAARDVTATVDSLPLITASILSKKLVEGLSALVVDVKFGGAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GCCIVGQSEQLVPADGILYAARDVTATVDSLPLITASILSKKLVEGLSALVVDVKFGGAA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 VFPNQEQARELAKTLVGVGASLGLRVAAALTAMDKPLGRCVGHALEVEEALLCMDGAGPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VFPNQEQARELAKTLVGVGASLGLRVAAALTAMDKPLGRCVGHALEVEEALLCMDGAGPP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 DLRDLVTTLGGALLWLSGHAGTQAQGAARVAAALDDGSALGRFERMLAAQGVDPGLARAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DLRDLVTTLGGALLWLSGHAGTQAQGAARVAAALDDGSALGRFERMLAAQGVDPGLARAL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 CSGSPAERRQLLPRAREQEELLAPADGTVELVRALPLALVLHELGAGRSRAGEPLRLGVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CSGSPAERRQLLPRAREQEELLAPADGTVELVRALPLALVLHELGAGRSRAGEPLRLGVG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE1 AELLVDVGQRLRRGTPWLRVHRDGPALSGPQSRALQEALVLSDRAPFAAPSPFAELVLPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AELLVDVGQRLRRGTPWLRVHRDGPALSGPQSRALQEALVLSDRAPFAAPSPFAELVLPP
430 440 450 460 470 480
pF1KE1 QQ
::
NP_001 QQ
>>NP_001244917 (OMIM: 131222,603041) thymidine phosphory (482 aa)
initn: 3163 init1: 3163 opt: 3163 Z-score: 3259.5 bits: 612.5 E(85289): 8.1e-175
Smith-Waterman score: 3163; 100.0% identity (100.0% similar) in 482 aa overlap (1-482:1-482)
10 20 30 40 50 60
pF1KE1 MAALMTPGTGAPPAPGDFSGEGSQGLPDPSPEPKQLPELIRMKRDGGRLSEADIRGFVAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAALMTPGTGAPPAPGDFSGEGSQGLPDPSPEPKQLPELIRMKRDGGRLSEADIRGFVAA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 VVNGSAQGAQIGAMLMAIRLRGMDLEETSVLTQALAQSGQQLEWPEAWRQQLVDKHSTGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VVNGSAQGAQIGAMLMAIRLRGMDLEETSVLTQALAQSGQQLEWPEAWRQQLVDKHSTGG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 VGDKVSLVLAPALAACGCKVPMISGRGLGHTGGTLDKLESIPGFNVIQSPEQMQVLLDQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VGDKVSLVLAPALAACGCKVPMISGRGLGHTGGTLDKLESIPGFNVIQSPEQMQVLLDQA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 GCCIVGQSEQLVPADGILYAARDVTATVDSLPLITASILSKKLVEGLSALVVDVKFGGAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GCCIVGQSEQLVPADGILYAARDVTATVDSLPLITASILSKKLVEGLSALVVDVKFGGAA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 VFPNQEQARELAKTLVGVGASLGLRVAAALTAMDKPLGRCVGHALEVEEALLCMDGAGPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VFPNQEQARELAKTLVGVGASLGLRVAAALTAMDKPLGRCVGHALEVEEALLCMDGAGPP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 DLRDLVTTLGGALLWLSGHAGTQAQGAARVAAALDDGSALGRFERMLAAQGVDPGLARAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DLRDLVTTLGGALLWLSGHAGTQAQGAARVAAALDDGSALGRFERMLAAQGVDPGLARAL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 CSGSPAERRQLLPRAREQEELLAPADGTVELVRALPLALVLHELGAGRSRAGEPLRLGVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CSGSPAERRQLLPRAREQEELLAPADGTVELVRALPLALVLHELGAGRSRAGEPLRLGVG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE1 AELLVDVGQRLRRGTPWLRVHRDGPALSGPQSRALQEALVLSDRAPFAAPSPFAELVLPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AELLVDVGQRLRRGTPWLRVHRDGPALSGPQSRALQEALVLSDRAPFAAPSPFAELVLPP
430 440 450 460 470 480
pF1KE1 QQ
::
NP_001 QQ
>>NP_001244918 (OMIM: 131222,603041) thymidine phosphory (487 aa)
initn: 3149 init1: 2530 opt: 3143 Z-score: 3238.9 bits: 608.7 E(85289): 1.1e-173
Smith-Waterman score: 3143; 99.0% identity (99.0% similar) in 487 aa overlap (1-482:1-487)
10 20 30 40 50 60
pF1KE1 MAALMTPGTGAPPAPGDFSGEGSQGLPDPSPEPKQLPELIRMKRDGGRLSEADIRGFVAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAALMTPGTGAPPAPGDFSGEGSQGLPDPSPEPKQLPELIRMKRDGGRLSEADIRGFVAA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 VVNGSAQGAQIGAMLMAIRLRGMDLEETSVLTQALAQSGQQLEWPEAWRQQLVDKHSTGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VVNGSAQGAQIGAMLMAIRLRGMDLEETSVLTQALAQSGQQLEWPEAWRQQLVDKHSTGG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 VGDKVSLVLAPALAACGCKVPMISGRGLGHTGGTLDKLESIPGFNVIQSPEQMQVLLDQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VGDKVSLVLAPALAACGCKVPMISGRGLGHTGGTLDKLESIPGFNVIQSPEQMQVLLDQA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 GCCIVGQSEQLVPADGILYAARDVTATVDSLPLITASILSKKLVEGLSALVVDVKFGGAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GCCIVGQSEQLVPADGILYAARDVTATVDSLPLITASILSKKLVEGLSALVVDVKFGGAA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 VFPNQEQARELAKTLVGVGASLGLRVAAALTAMDKPLGRCVGHALEVEEALLCMDGAGPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VFPNQEQARELAKTLVGVGASLGLRVAAALTAMDKPLGRCVGHALEVEEALLCMDGAGPP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 DLRDLVTTLGGALLWLSGHAGTQAQGAARVAAALDDGSALGRFERMLAAQGVDPGLARAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DLRDLVTTLGGALLWLSGHAGTQAQGAARVAAALDDGSALGRFERMLAAQGVDPGLARAL
310 320 330 340 350 360
370 380 390 400 410
pF1KE1 CSGSPAERRQLLPRAREQEELLAPAD-----GTVELVRALPLALVLHELGAGRSRAGEPL
:::::::::::::::::::::::::: :::::::::::::::::::::::::::::
NP_001 CSGSPAERRQLLPRAREQEELLAPADAPLPAGTVELVRALPLALVLHELGAGRSRAGEPL
370 380 390 400 410 420
420 430 440 450 460 470
pF1KE1 RLGVGAELLVDVGQRLRRGTPWLRVHRDGPALSGPQSRALQEALVLSDRAPFAAPSPFAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RLGVGAELLVDVGQRLRRGTPWLRVHRDGPALSGPQSRALQEALVLSDRAPFAAPSPFAE
430 440 450 460 470 480
480
pF1KE1 LVLPPQQ
:::::::
NP_001 LVLPPQQ
482 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 15:42:16 2016 done: Mon Nov 7 15:42:17 2016
Total Scan time: 10.360 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]