FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1421, 482 aa 1>>>pF1KE1421 482 - 482 aa - 482 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.0094+/-0.000721; mu= 15.9885+/- 0.044 mean_var=92.7496+/-18.762, 0's: 0 Z-trim(111.4): 6 B-trim: 105 in 1/50 Lambda= 0.133174 statistics sampled from 12367 (12370) to 12367 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.727), E-opt: 0.2 (0.38), width: 16 Scan time: 3.670 The best scores are: opt bits E(32554) CCDS14096.1 TYMP gene_id:1890|Hs108|chr22 ( 482) 3163 617.6 9.5e-177 CCDS58811.1 TYMP gene_id:1890|Hs108|chr22 ( 487) 3143 613.7 1.4e-175 >>CCDS14096.1 TYMP gene_id:1890|Hs108|chr22 (482 aa) initn: 3163 init1: 3163 opt: 3163 Z-score: 3286.7 bits: 617.6 E(32554): 9.5e-177 Smith-Waterman score: 3163; 100.0% identity (100.0% similar) in 482 aa overlap (1-482:1-482) 10 20 30 40 50 60 pF1KE1 MAALMTPGTGAPPAPGDFSGEGSQGLPDPSPEPKQLPELIRMKRDGGRLSEADIRGFVAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 MAALMTPGTGAPPAPGDFSGEGSQGLPDPSPEPKQLPELIRMKRDGGRLSEADIRGFVAA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 VVNGSAQGAQIGAMLMAIRLRGMDLEETSVLTQALAQSGQQLEWPEAWRQQLVDKHSTGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 VVNGSAQGAQIGAMLMAIRLRGMDLEETSVLTQALAQSGQQLEWPEAWRQQLVDKHSTGG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 VGDKVSLVLAPALAACGCKVPMISGRGLGHTGGTLDKLESIPGFNVIQSPEQMQVLLDQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 VGDKVSLVLAPALAACGCKVPMISGRGLGHTGGTLDKLESIPGFNVIQSPEQMQVLLDQA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 GCCIVGQSEQLVPADGILYAARDVTATVDSLPLITASILSKKLVEGLSALVVDVKFGGAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 GCCIVGQSEQLVPADGILYAARDVTATVDSLPLITASILSKKLVEGLSALVVDVKFGGAA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 VFPNQEQARELAKTLVGVGASLGLRVAAALTAMDKPLGRCVGHALEVEEALLCMDGAGPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 VFPNQEQARELAKTLVGVGASLGLRVAAALTAMDKPLGRCVGHALEVEEALLCMDGAGPP 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 DLRDLVTTLGGALLWLSGHAGTQAQGAARVAAALDDGSALGRFERMLAAQGVDPGLARAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 DLRDLVTTLGGALLWLSGHAGTQAQGAARVAAALDDGSALGRFERMLAAQGVDPGLARAL 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE1 CSGSPAERRQLLPRAREQEELLAPADGTVELVRALPLALVLHELGAGRSRAGEPLRLGVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 CSGSPAERRQLLPRAREQEELLAPADGTVELVRALPLALVLHELGAGRSRAGEPLRLGVG 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE1 AELLVDVGQRLRRGTPWLRVHRDGPALSGPQSRALQEALVLSDRAPFAAPSPFAELVLPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 AELLVDVGQRLRRGTPWLRVHRDGPALSGPQSRALQEALVLSDRAPFAAPSPFAELVLPP 430 440 450 460 470 480 pF1KE1 QQ :: CCDS14 QQ >>CCDS58811.1 TYMP gene_id:1890|Hs108|chr22 (487 aa) initn: 3149 init1: 2530 opt: 3143 Z-score: 3265.9 bits: 613.7 E(32554): 1.4e-175 Smith-Waterman score: 3143; 99.0% identity (99.0% similar) in 487 aa overlap (1-482:1-487) 10 20 30 40 50 60 pF1KE1 MAALMTPGTGAPPAPGDFSGEGSQGLPDPSPEPKQLPELIRMKRDGGRLSEADIRGFVAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 MAALMTPGTGAPPAPGDFSGEGSQGLPDPSPEPKQLPELIRMKRDGGRLSEADIRGFVAA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 VVNGSAQGAQIGAMLMAIRLRGMDLEETSVLTQALAQSGQQLEWPEAWRQQLVDKHSTGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 VVNGSAQGAQIGAMLMAIRLRGMDLEETSVLTQALAQSGQQLEWPEAWRQQLVDKHSTGG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 VGDKVSLVLAPALAACGCKVPMISGRGLGHTGGTLDKLESIPGFNVIQSPEQMQVLLDQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 VGDKVSLVLAPALAACGCKVPMISGRGLGHTGGTLDKLESIPGFNVIQSPEQMQVLLDQA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 GCCIVGQSEQLVPADGILYAARDVTATVDSLPLITASILSKKLVEGLSALVVDVKFGGAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 GCCIVGQSEQLVPADGILYAARDVTATVDSLPLITASILSKKLVEGLSALVVDVKFGGAA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 VFPNQEQARELAKTLVGVGASLGLRVAAALTAMDKPLGRCVGHALEVEEALLCMDGAGPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 VFPNQEQARELAKTLVGVGASLGLRVAAALTAMDKPLGRCVGHALEVEEALLCMDGAGPP 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 DLRDLVTTLGGALLWLSGHAGTQAQGAARVAAALDDGSALGRFERMLAAQGVDPGLARAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 DLRDLVTTLGGALLWLSGHAGTQAQGAARVAAALDDGSALGRFERMLAAQGVDPGLARAL 310 320 330 340 350 360 370 380 390 400 410 pF1KE1 CSGSPAERRQLLPRAREQEELLAPAD-----GTVELVRALPLALVLHELGAGRSRAGEPL :::::::::::::::::::::::::: ::::::::::::::::::::::::::::: CCDS58 CSGSPAERRQLLPRAREQEELLAPADAPLPAGTVELVRALPLALVLHELGAGRSRAGEPL 370 380 390 400 410 420 420 430 440 450 460 470 pF1KE1 RLGVGAELLVDVGQRLRRGTPWLRVHRDGPALSGPQSRALQEALVLSDRAPFAAPSPFAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 RLGVGAELLVDVGQRLRRGTPWLRVHRDGPALSGPQSRALQEALVLSDRAPFAAPSPFAE 430 440 450 460 470 480 480 pF1KE1 LVLPPQQ ::::::: CCDS58 LVLPPQQ 482 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 15:42:15 2016 done: Mon Nov 7 15:42:16 2016 Total Scan time: 3.670 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]