FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5217, 204 aa 1>>>pF1KE5217 204 - 204 aa - 204 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1017+/-0.000385; mu= 13.8255+/- 0.024 mean_var=53.7242+/-11.111, 0's: 0 Z-trim(110.7): 20 B-trim: 0 in 0/50 Lambda= 0.174980 statistics sampled from 19063 (19064) to 19063 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.602), E-opt: 0.2 (0.224), width: 16 Scan time: 5.070 The best scores are: opt bits E(85289) NP_001000 (OMIM: 603630) 40S ribosomal protein S5 ( 204) 1322 341.7 4.8e-94 >>NP_001000 (OMIM: 603630) 40S ribosomal protein S5 [Hom (204 aa) initn: 1322 init1: 1322 opt: 1322 Z-score: 1809.4 bits: 341.7 E(85289): 4.8e-94 Smith-Waterman score: 1322; 100.0% identity (100.0% similar) in 204 aa overlap (1-204:1-204) 10 20 30 40 50 60 pF1KE5 MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINA 130 140 150 160 170 180 190 200 pF1KE5 AKGSSNSYAIKKKDELERVAKSNR :::::::::::::::::::::::: NP_001 AKGSSNSYAIKKKDELERVAKSNR 190 200 204 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 22:36:07 2016 done: Mon Nov 7 22:36:07 2016 Total Scan time: 5.070 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]