FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6327, 314 aa
  1>>>pF1KE6327 314 - 314 aa - 314 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0898+/-0.000401; mu= 16.5758+/- 0.025
 mean_var=55.2399+/-11.273, 0's: 0 Z-trim(110.7): 40  B-trim: 28 in 1/49
 Lambda= 0.172563
 statistics sampled from 19131 (19140) to 19131 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.604), E-opt: 0.2 (0.224), width:  16
 Scan time:  6.480

The best scores are:                                      opt bits E(85289)
NP_001879 (OMIM: 123740,616357) ketimine reductase ( 314) 2000 506.1 3.8e-143


>>NP_001879 (OMIM: 123740,616357) ketimine reductase mu-  (314 aa)
 initn: 2000 init1: 2000 opt: 2000  Z-score: 2690.9  bits: 506.1 E(85289): 3.8e-143
Smith-Waterman score: 2000; 100.0% identity (100.0% similar) in 314 aa overlap (1-314:1-314)

               10        20        30        40        50        60
pF1KE6 MSRVPAFLSAAEVEEHLRSSSLLIPPLETALANFSSGPEGGVMQPVRTVVPVTKHRGYLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSRVPAFLSAAEVEEHLRSSSLLIPPLETALANFSSGPEGGVMQPVRTVVPVTKHRGYLG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 VMPAYSAAEDALTTKLVTFYEDRGITSVVPSHQATVLLFEPSNGTLLAVMDGNVITAKRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VMPAYSAAEDALTTKLVTFYEDRGITSVVPSHQATVLLFEPSNGTLLAVMDGNVITAKRT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 AAVSAIATKFLKPPSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AAVSAIATKFLKPPSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 VQGEVRVCSSVQEAVAGADVIITVTLATEPILFGEWVKPGAHINAVGASRPDWRELDDEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VQGEVRVCSSVQEAVAGADVIITVTLATEPILFGEWVKPGAHINAVGASRPDWRELDDEL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 MKEAVLYVDSQEAALKESGDVLLSGAEIFAELGEVIKGVKPAHCEKTTVFKSLGMAVEDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKEAVLYVDSQEAALKESGDVLLSGAEIFAELGEVIKGVKPAHCEKTTVFKSLGMAVEDT
              250       260       270       280       290       300

              310    
pF1KE6 VAAKLIYDSWSSGK
       ::::::::::::::
NP_001 VAAKLIYDSWSSGK
              310    




314 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 12:08:36 2016 done: Tue Nov  8 12:08:36 2016
 Total Scan time:  6.480 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]