FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2404, 361 aa 1>>>pF1KE2404 361 - 361 aa - 361 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.7842+/-0.000315; mu= 19.4827+/- 0.020 mean_var=62.8835+/-12.634, 0's: 0 Z-trim(115.8): 30 B-trim: 0 in 0/54 Lambda= 0.161736 statistics sampled from 26430 (26448) to 26430 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.691), E-opt: 0.2 (0.31), width: 16 Scan time: 8.710 The best scores are: opt bits E(85289) NP_542388 (OMIM: 607810) radical S-adenosyl methio ( 361) 2462 582.9 3.9e-166 XP_011508716 (OMIM: 607810) PREDICTED: radical S-a ( 361) 2462 582.9 3.9e-166 XP_011508717 (OMIM: 607810) PREDICTED: radical S-a ( 293) 1675 399.2 6.2e-111 NP_005934 (OMIM: 252150,603707) molybdenum cofacto ( 385) 136 40.1 0.0097 NP_001068566 (OMIM: 252150,603707) molybdenum cofa ( 385) 136 40.1 0.0097 >>NP_542388 (OMIM: 607810) radical S-adenosyl methionine (361 aa) initn: 2462 init1: 2462 opt: 2462 Z-score: 3103.7 bits: 582.9 E(85289): 3.9e-166 Smith-Waterman score: 2462; 99.7% identity (99.7% similar) in 361 aa overlap (1-361:1-361) 10 20 30 40 50 60 pF1KE2 MWVLTPAAFAGKLLSVFRQPLSSLWRSLVPLFCWLRATFWLRATKRRKQQLVLRGPDETK ::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::: NP_542 MWVLTPAAFAGKLLSVFRQPLSSLWRSLVPLFCWLRATFWLLATKRRKQQLVLRGPDETK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 EEEEDPPLPTTPTSVNYHFTRQCNYKCGFCFHTAKTSFVLPLEEAKRGLLLLKEAGMEKI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_542 EEEEDPPLPTTPTSVNYHFTRQCNYKCGFCFHTAKTSFVLPLEEAKRGLLLLKEAGMEKI 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 NFSGGEPFLQDRGEYLGKLVRFCKVELRLPSVSIVSNGSLIRERWFQNYGEYLDILAISC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_542 NFSGGEPFLQDRGEYLGKLVRFCKVELRLPSVSIVSNGSLIRERWFQNYGEYLDILAISC 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 DSFDEEVNVLIGRGQGKKNHVENLQKLRRWCRDYRVAFKINSVINRFNVEEDMTEQIKAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_542 DSFDEEVNVLIGRGQGKKNHVENLQKLRRWCRDYRVAFKINSVINRFNVEEDMTEQIKAL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 NPVRWKVFQCLLIEGENCGEDALREAERFVIGDEEFERFLERHKEVSCLVPESNQKMKDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_542 NPVRWKVFQCLLIEGENCGEDALREAERFVIGDEEFERFLERHKEVSCLVPESNQKMKDS 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE2 YLILDEYMRFLNCRKGRKDPSKSILDVGVEEAIKFSGFDEKMFLKRGGKYIWSKADLKLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_542 YLILDEYMRFLNCRKGRKDPSKSILDVGVEEAIKFSGFDEKMFLKRGGKYIWSKADLKLD 310 320 330 340 350 360 pF1KE2 W : NP_542 W >>XP_011508716 (OMIM: 607810) PREDICTED: radical S-adeno (361 aa) initn: 2462 init1: 2462 opt: 2462 Z-score: 3103.7 bits: 582.9 E(85289): 3.9e-166 Smith-Waterman score: 2462; 99.7% identity (99.7% similar) in 361 aa overlap (1-361:1-361) 10 20 30 40 50 60 pF1KE2 MWVLTPAAFAGKLLSVFRQPLSSLWRSLVPLFCWLRATFWLRATKRRKQQLVLRGPDETK ::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::: XP_011 MWVLTPAAFAGKLLSVFRQPLSSLWRSLVPLFCWLRATFWLLATKRRKQQLVLRGPDETK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 EEEEDPPLPTTPTSVNYHFTRQCNYKCGFCFHTAKTSFVLPLEEAKRGLLLLKEAGMEKI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 EEEEDPPLPTTPTSVNYHFTRQCNYKCGFCFHTAKTSFVLPLEEAKRGLLLLKEAGMEKI 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 NFSGGEPFLQDRGEYLGKLVRFCKVELRLPSVSIVSNGSLIRERWFQNYGEYLDILAISC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 NFSGGEPFLQDRGEYLGKLVRFCKVELRLPSVSIVSNGSLIRERWFQNYGEYLDILAISC 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 DSFDEEVNVLIGRGQGKKNHVENLQKLRRWCRDYRVAFKINSVINRFNVEEDMTEQIKAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 DSFDEEVNVLIGRGQGKKNHVENLQKLRRWCRDYRVAFKINSVINRFNVEEDMTEQIKAL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 NPVRWKVFQCLLIEGENCGEDALREAERFVIGDEEFERFLERHKEVSCLVPESNQKMKDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 NPVRWKVFQCLLIEGENCGEDALREAERFVIGDEEFERFLERHKEVSCLVPESNQKMKDS 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE2 YLILDEYMRFLNCRKGRKDPSKSILDVGVEEAIKFSGFDEKMFLKRGGKYIWSKADLKLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 YLILDEYMRFLNCRKGRKDPSKSILDVGVEEAIKFSGFDEKMFLKRGGKYIWSKADLKLD 310 320 330 340 350 360 pF1KE2 W : XP_011 W >>XP_011508717 (OMIM: 607810) PREDICTED: radical S-adeno (293 aa) initn: 1675 init1: 1675 opt: 1675 Z-score: 2112.5 bits: 399.2 E(85289): 6.2e-111 Smith-Waterman score: 1675; 98.8% identity (99.2% similar) in 249 aa overlap (113-361:45-293) 90 100 110 120 130 140 pF1KE2 CNYKCGFCFHTAKTSFVLPLEEAKRGLLLLKEAGMEKINFSGGEPFLQDRGEYLGKLVRF . ::::::::::::::::::::::::::: XP_011 PRGPRCAAPRACAVPRRRLPGLTPNEAPRRRPQGMEKINFSGGEPFLQDRGEYLGKLVRF 20 30 40 50 60 70 150 160 170 180 190 200 pF1KE2 CKVELRLPSVSIVSNGSLIRERWFQNYGEYLDILAISCDSFDEEVNVLIGRGQGKKNHVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 CKVELRLPSVSIVSNGSLIRERWFQNYGEYLDILAISCDSFDEEVNVLIGRGQGKKNHVE 80 90 100 110 120 130 210 220 230 240 250 260 pF1KE2 NLQKLRRWCRDYRVAFKINSVINRFNVEEDMTEQIKALNPVRWKVFQCLLIEGENCGEDA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 NLQKLRRWCRDYRVAFKINSVINRFNVEEDMTEQIKALNPVRWKVFQCLLIEGENCGEDA 140 150 160 170 180 190 270 280 290 300 310 320 pF1KE2 LREAERFVIGDEEFERFLERHKEVSCLVPESNQKMKDSYLILDEYMRFLNCRKGRKDPSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 LREAERFVIGDEEFERFLERHKEVSCLVPESNQKMKDSYLILDEYMRFLNCRKGRKDPSK 200 210 220 230 240 250 330 340 350 360 pF1KE2 SILDVGVEEAIKFSGFDEKMFLKRGGKYIWSKADLKLDW ::::::::::::::::::::::::::::::::::::::: XP_011 SILDVGVEEAIKFSGFDEKMFLKRGGKYIWSKADLKLDW 260 270 280 290 >>NP_005934 (OMIM: 252150,603707) molybdenum cofactor bi (385 aa) initn: 64 init1: 64 opt: 136 Z-score: 170.1 bits: 40.1 E(85289): 0.0097 Smith-Waterman score: 136; 25.9% identity (59.4% similar) in 170 aa overlap (79-240:76-235) 50 60 70 80 90 100 pF1KE2 QQLVLRGPDETKEEEEDPPLPTTPTSVNYHFTRQCNYKCGFCFH------TAKTSFVLPL .:..:: .: .:. : :.... NP_005 RRQFLREHAAPFSAFLTDSFGRQHSYLRISLTEKCNLRCQYCMPEEGVPLTPKANLLTTE 50 60 70 80 90 100 110 120 130 140 150 160 pF1KE2 EEAKRGLLLLKEAGMEKINFSGGEPFLQDRGEYLGKLVRFCKVELRLPSVSIVSNG-SLI : . :..:: :..:: ..::::.. : . . .... ..: : ......:: .: NP_005 EILTLARLFVKE-GIDKIRLTGGEPLI--RPDVVDIVAQLQRLE-GLRTIGVTTNGINLA 110 120 130 140 150 160 170 180 190 200 210 220 pF1KE2 RER-WFQNYGEYLDILAISCDSFDEEVNVLIGRGQGKKNHVENLQKLRRWCRDYRVAFKI : .:. : :. . :: :.. .: : .: .. .:...: . . :. NP_005 RLLPQLQKAG--LSAINISLDTLVPAKFEFIVRRKGFHKVMEGIHKAIELGYN---PVKV 170 180 190 200 210 230 240 250 260 270 280 pF1KE2 NSVINRFNVEEDMTEQIKALNPVRWKVFQCLLIEGENCGEDALREAERFVIGDEEFERFL : :. : ...:: .. :: NP_005 NCVVMR-GLNEDELLDFAALTEGLPLDVRFIEYMPFDGNKWNFKKMVSYKEMLDTVRQQW 220 230 240 250 260 270 >>NP_001068566 (OMIM: 252150,603707) molybdenum cofactor (385 aa) initn: 64 init1: 64 opt: 136 Z-score: 170.1 bits: 40.1 E(85289): 0.0097 Smith-Waterman score: 136; 25.9% identity (59.4% similar) in 170 aa overlap (79-240:76-235) 50 60 70 80 90 100 pF1KE2 QQLVLRGPDETKEEEEDPPLPTTPTSVNYHFTRQCNYKCGFCFH------TAKTSFVLPL .:..:: .: .:. : :.... NP_001 RRQFLREHAAPFSAFLTDSFGRQHSYLRISLTEKCNLRCQYCMPEEGVPLTPKANLLTTE 50 60 70 80 90 100 110 120 130 140 150 160 pF1KE2 EEAKRGLLLLKEAGMEKINFSGGEPFLQDRGEYLGKLVRFCKVELRLPSVSIVSNG-SLI : . :..:: :..:: ..::::.. : . . .... ..: : ......:: .: NP_001 EILTLARLFVKE-GIDKIRLTGGEPLI--RPDVVDIVAQLQRLE-GLRTIGVTTNGINLA 110 120 130 140 150 160 170 180 190 200 210 220 pF1KE2 RER-WFQNYGEYLDILAISCDSFDEEVNVLIGRGQGKKNHVENLQKLRRWCRDYRVAFKI : .:. : :. . :: :.. .: : .: .. .:...: . . :. NP_001 RLLPQLQKAG--LSAINISLDTLVPAKFEFIVRRKGFHKVMEGIHKAIELGYN---PVKV 170 180 190 200 210 230 240 250 260 270 280 pF1KE2 NSVINRFNVEEDMTEQIKALNPVRWKVFQCLLIEGENCGEDALREAERFVIGDEEFERFL : :. : ...:: .. :: NP_001 NCVVMR-GLNEDELLDFAALTEGLPLDVRFIEYMPFDGNKWNFKKMVSYKEMLDTVRQQW 220 230 240 250 260 270 361 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 09:18:09 2016 done: Sun Nov 6 09:18:10 2016 Total Scan time: 8.710 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]