FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1337, 158 aa 1>>>pF1KE1337 158 - 158 aa - 158 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.7752+/-0.00029; mu= 14.9432+/- 0.018 mean_var=64.6876+/-13.069, 0's: 0 Z-trim(119.0): 100 B-trim: 3177 in 2/51 Lambda= 0.159464 statistics sampled from 32368 (32506) to 32368 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.765), E-opt: 0.2 (0.381), width: 16 Scan time: 5.440 The best scores are: opt bits E(85289) NP_038459 (OMIM: 602893) NKG2-F type II integral m ( 158) 1088 258.1 4.2e-69 NP_002251 (OMIM: 602891) NKG2-C type II integral m ( 231) 823 197.3 1.3e-50 NP_002252 (OMIM: 602892) NKG2-E type II integral m ( 240) 810 194.3 1e-49 NP_031359 (OMIM: 602892) NKG2-E type II integral m ( 257) 810 194.3 1.1e-49 NP_001291377 (OMIM: 161555) NKG2-A/NKG2-B type II ( 228) 645 156.3 2.6e-38 NP_002250 (OMIM: 161555) NKG2-A/NKG2-B type II int ( 233) 645 156.4 2.7e-38 NP_998823 (OMIM: 161555) NKG2-A/NKG2-B type II int ( 233) 645 156.4 2.7e-38 NP_998822 (OMIM: 161555) NKG2-A/NKG2-B type II int ( 215) 364 91.7 7.3e-19 NP_015567 (OMIM: 161555) NKG2-A/NKG2-B type II int ( 215) 364 91.7 7.3e-19 NP_001107868 (OMIM: 602894) natural killer cells a ( 179) 163 45.4 5.3e-05 NP_002253 (OMIM: 602894) natural killer cells anti ( 179) 163 45.4 5.3e-05 XP_016874780 (OMIM: 602894) PREDICTED: natural kil ( 179) 159 44.5 0.0001 XP_016874779 (OMIM: 602894) PREDICTED: natural kil ( 185) 159 44.5 0.0001 XP_006719130 (OMIM: 602894) PREDICTED: natural kil ( 185) 159 44.5 0.0001 XP_011518953 (OMIM: 602894) PREDICTED: natural kil ( 186) 159 44.5 0.0001 XP_016874776 (OMIM: 602894) PREDICTED: natural kil ( 219) 159 44.5 0.00012 XP_016874774 (OMIM: 602894) PREDICTED: natural kil ( 220) 159 44.5 0.00012 XP_016874775 (OMIM: 602894) PREDICTED: natural kil ( 220) 159 44.5 0.00012 XP_011518952 (OMIM: 602894) PREDICTED: natural kil ( 220) 159 44.5 0.00012 NP_031386 (OMIM: 611817) NKG2-D type II integral m ( 216) 148 42.0 0.00067 NP_005801 (OMIM: 604874) killer cell lectin-like r ( 189) 136 39.2 0.0041 NP_001316028 (OMIM: 604874) killer cell lectin-lik ( 195) 136 39.2 0.0042 XP_016874173 (OMIM: 604874) PREDICTED: killer cell ( 199) 136 39.2 0.0042 XP_016874171 (OMIM: 604874) PREDICTED: killer cell ( 199) 136 39.2 0.0042 XP_016874174 (OMIM: 604874) PREDICTED: killer cell ( 199) 136 39.2 0.0042 XP_016874172 (OMIM: 604874) PREDICTED: killer cell ( 199) 136 39.2 0.0042 NP_031360 (OMIM: 602894) natural killer cells anti ( 148) 132 38.2 0.0064 XP_016874778 (OMIM: 602894) PREDICTED: natural kil ( 188) 132 38.3 0.0077 XP_016874777 (OMIM: 602894) PREDICTED: natural kil ( 189) 132 38.3 0.0077 >>NP_038459 (OMIM: 602893) NKG2-F type II integral membr (158 aa) initn: 1088 init1: 1088 opt: 1088 Z-score: 1361.6 bits: 258.1 E(85289): 4.2e-69 Smith-Waterman score: 1088; 100.0% identity (100.0% similar) in 158 aa overlap (1-158:1-158) 10 20 30 40 50 60 pF1KE1 MNKQRGTYSEVSLAQDPKRQQRKLKGNKISISGTKQEIFQVELNLQNASSDHQGNDKTYH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_038 MNKQRGTYSEVSLAQDPKRQQRKLKGNKISISGTKQEIFQVELNLQNASSDHQGNDKTYH 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 CKGLLPPPEKLTAEVLGIICIVLMATVLKTIVLIPCIGVLEQNNFSLNRRMQKARHCGHC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_038 CKGLLPPPEKLTAEVLGIICIVLMATVLKTIVLIPCIGVLEQNNFSLNRRMQKARHCGHC 70 80 90 100 110 120 130 140 150 pF1KE1 PEEWITYSNSCYYIGKERRTWEERVCWPVLRRTLICFL :::::::::::::::::::::::::::::::::::::: NP_038 PEEWITYSNSCYYIGKERRTWEERVCWPVLRRTLICFL 130 140 150 >>NP_002251 (OMIM: 602891) NKG2-C type II integral membr (231 aa) initn: 556 init1: 539 opt: 823 Z-score: 1029.9 bits: 197.3 E(85289): 1.3e-50 Smith-Waterman score: 823; 87.4% identity (90.2% similar) in 143 aa overlap (1-143:1-140) 10 20 30 40 50 60 pF1KE1 MNKQRGTYSEVSLAQDPKRQQRKLKGNKISISGTKQEIFQVELNLQNASSDHQGNDKTYH :::::::.::::::::::::::: :::: :::::.:::::::::::: : .::: :: : NP_002 MNKQRGTFSEVSLAQDPKRQQRKPKGNKSSISGTEQEIFQVELNLQNPSLNHQGIDKIYD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 CKGLLPPPEKLTAEVLGIICIVLMATVLKTIVLIPCIGVLEQNNFSLNRRMQKARHCGHC :.::::::::::::::::::::::::::::::::: ::::::: : : ::::::::: NP_002 CQGLLPPPEKLTAEVLGIICIVLMATVLKTIVLIP---FLEQNNFSPNTRTQKARHCGHC 70 80 90 100 110 130 140 150 pF1KE1 PEEWITYSNSCYYIGKERRTWEERVCWPVLRRTLICFL ::::::::::::::::::::::: NP_002 PEEWITYSNSCYYIGKERRTWEESLLACTSKNSSLLSIDNEEEMKFLASILPSSWIGVFR 120 130 140 150 160 170 >>NP_002252 (OMIM: 602892) NKG2-E type II integral membr (240 aa) initn: 532 init1: 532 opt: 810 Z-score: 1013.5 bits: 194.3 E(85289): 1e-49 Smith-Waterman score: 810; 79.7% identity (85.4% similar) in 158 aa overlap (1-156:1-155) 10 20 30 40 50 60 pF1KE1 MNKQRGTYSEVSLAQDPKRQQRKLKGNKISISGTKQEIFQVELNLQNASSDHQGNDKTYH :.:::::.:::::::::: :::: :::: :::::.:::::::::::::: .::: :: : NP_002 MSKQRGTFSEVSLAQDPKWQQRKPKGNKSSISGTEQEIFQVELNLQNASLNHQGIDKIYD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 CKGLLPPPEKLTAEVLGIICIVLMATVLKTIVLIPCIGVLEQNNFSLNRRMQKARHCGHC :.::::::::::::::::::::::::::::::::: ::::: : : : ::::::::: NP_002 CQGLLPPPEKLTAEVLGIICIVLMATVLKTIVLIP---FLEQNNSSPNARTQKARHCGHC 70 80 90 100 110 130 140 150 pF1KE1 PEEWITYSNSCYYIGKERRTWEE--RVCWPVLRRTLICFL ::::::::::::::::::::::: ..: .:.: NP_002 PEEWITYSNSCYYIGKERRTWEESLQACASKNSSSLLCIDNEEEMKFLASILPSSWIGVF 120 130 140 150 160 170 NP_002 RNSSHHPWVTINGLAFKHEIKDSDHAERNCAMLHVRGLISDQCGSSRIIRRGFIMLTRLV 180 190 200 210 220 230 >>NP_031359 (OMIM: 602892) NKG2-E type II integral membr (257 aa) initn: 532 init1: 532 opt: 810 Z-score: 1013.1 bits: 194.3 E(85289): 1.1e-49 Smith-Waterman score: 810; 79.7% identity (85.4% similar) in 158 aa overlap (1-156:1-155) 10 20 30 40 50 60 pF1KE1 MNKQRGTYSEVSLAQDPKRQQRKLKGNKISISGTKQEIFQVELNLQNASSDHQGNDKTYH :.:::::.:::::::::: :::: :::: :::::.:::::::::::::: .::: :: : NP_031 MSKQRGTFSEVSLAQDPKWQQRKPKGNKSSISGTEQEIFQVELNLQNASLNHQGIDKIYD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 CKGLLPPPEKLTAEVLGIICIVLMATVLKTIVLIPCIGVLEQNNFSLNRRMQKARHCGHC :.::::::::::::::::::::::::::::::::: ::::: : : : ::::::::: NP_031 CQGLLPPPEKLTAEVLGIICIVLMATVLKTIVLIP---FLEQNNSSPNARTQKARHCGHC 70 80 90 100 110 130 140 150 pF1KE1 PEEWITYSNSCYYIGKERRTWEE--RVCWPVLRRTLICFL ::::::::::::::::::::::: ..: .:.: NP_031 PEEWITYSNSCYYIGKERRTWEESLQACASKNSSSLLCIDNEEEMKFLASILPSSWIGVF 120 130 140 150 160 170 NP_031 RNSSHHPWVTINGLAFKHEIKDSDHAERNCAMLHVRGLISDQCGSSRIIVSISFRIKALE 180 190 200 210 220 230 >>NP_001291377 (OMIM: 161555) NKG2-A/NKG2-B type II inte (228 aa) initn: 378 init1: 346 opt: 645 Z-score: 808.7 bits: 156.3 E(85289): 2.6e-38 Smith-Waterman score: 645; 67.8% identity (82.5% similar) in 143 aa overlap (1-143:1-142) 10 20 30 40 50 60 pF1KE1 MNKQRGTYSEVSLAQDPKRQQRKLKGNKISISGTKQEIFQVELNLQNASSDHQGNDKTYH :..: ::...: .::::::: :::: :: .:.::: .:::::.::.: :::::::: NP_001 MDNQGVIYSDLNLPPNPKRQQRKPKGNKSSILATEQEITYAELNLQKASQDFQGNDKTYH 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 CKGLLPPPEKLTAEVLGIICIVLMATVLKTIVLIPCIGVLEQNNFSLNRRMQKARHCGHC :: : :::: . .:::::..:::.:. :::.:: . ..:: ::: : ::::::::: NP_001 CKDLPSAPEKLIVGILGIICLILMASVV-TIVVIPSTLIQRHNNSSLNTRTQKARHCGHC 70 80 90 100 110 130 140 150 pF1KE1 PEEWITYSNSCYYIGKERRTWEERVCWPVLRRTLICFL ::::::::::::::::::::::: NP_001 PEEWITYSNSCYYIGKERRTWEESLLACTSKNSSLLSIDNEEEMKFLSIISPSSWIGVFR 120 130 140 150 160 170 >>NP_002250 (OMIM: 161555) NKG2-A/NKG2-B type II integra (233 aa) initn: 378 init1: 346 opt: 645 Z-score: 808.5 bits: 156.4 E(85289): 2.7e-38 Smith-Waterman score: 645; 67.8% identity (82.5% similar) in 143 aa overlap (1-143:1-142) 10 20 30 40 50 60 pF1KE1 MNKQRGTYSEVSLAQDPKRQQRKLKGNKISISGTKQEIFQVELNLQNASSDHQGNDKTYH :..: ::...: .::::::: :::: :: .:.::: .:::::.::.: :::::::: NP_002 MDNQGVIYSDLNLPPNPKRQQRKPKGNKSSILATEQEITYAELNLQKASQDFQGNDKTYH 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 CKGLLPPPEKLTAEVLGIICIVLMATVLKTIVLIPCIGVLEQNNFSLNRRMQKARHCGHC :: : :::: . .:::::..:::.:. :::.:: . ..:: ::: : ::::::::: NP_002 CKDLPSAPEKLIVGILGIICLILMASVV-TIVVIPSTLIQRHNNSSLNTRTQKARHCGHC 70 80 90 100 110 130 140 150 pF1KE1 PEEWITYSNSCYYIGKERRTWEERVCWPVLRRTLICFL ::::::::::::::::::::::: NP_002 PEEWITYSNSCYYIGKERRTWEESLLACTSKNSSLLSIDNEEEMKFLSIISPSSWIGVFR 120 130 140 150 160 170 >>NP_998823 (OMIM: 161555) NKG2-A/NKG2-B type II integra (233 aa) initn: 378 init1: 346 opt: 645 Z-score: 808.5 bits: 156.4 E(85289): 2.7e-38 Smith-Waterman score: 645; 67.8% identity (82.5% similar) in 143 aa overlap (1-143:1-142) 10 20 30 40 50 60 pF1KE1 MNKQRGTYSEVSLAQDPKRQQRKLKGNKISISGTKQEIFQVELNLQNASSDHQGNDKTYH :..: ::...: .::::::: :::: :: .:.::: .:::::.::.: :::::::: NP_998 MDNQGVIYSDLNLPPNPKRQQRKPKGNKSSILATEQEITYAELNLQKASQDFQGNDKTYH 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 CKGLLPPPEKLTAEVLGIICIVLMATVLKTIVLIPCIGVLEQNNFSLNRRMQKARHCGHC :: : :::: . .:::::..:::.:. :::.:: . ..:: ::: : ::::::::: NP_998 CKDLPSAPEKLIVGILGIICLILMASVV-TIVVIPSTLIQRHNNSSLNTRTQKARHCGHC 70 80 90 100 110 130 140 150 pF1KE1 PEEWITYSNSCYYIGKERRTWEERVCWPVLRRTLICFL ::::::::::::::::::::::: NP_998 PEEWITYSNSCYYIGKERRTWEESLLACTSKNSSLLSIDNEEEMKFLSIISPSSWIGVFR 120 130 140 150 160 170 >>NP_998822 (OMIM: 161555) NKG2-A/NKG2-B type II integra (215 aa) initn: 566 init1: 346 opt: 364 Z-score: 459.6 bits: 91.7 E(85289): 7.3e-19 Smith-Waterman score: 552; 61.5% identity (74.8% similar) in 143 aa overlap (1-143:1-124) 10 20 30 40 50 60 pF1KE1 MNKQRGTYSEVSLAQDPKRQQRKLKGNKISISGTKQEIFQVELNLQNASSDHQGNDKTYH :..: ::...: .::::::: :::: :: .:.::: .:::::.::.: :::::::: NP_998 MDNQGVIYSDLNLPPNPKRQQRKPKGNKSSILATEQEITYAELNLQKASQDFQGNDKTYH 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 CKGLLPPPEKLTAEVLGIICIVLMATVLKTIVLIPCIGVLEQNNFSLNRRMQKARHCGHC :: : :::: . .:::::..:::.:. :::.:: .:::::: NP_998 CKDLPSAPEKLIVGILGIICLILMASVV-TIVVIP------------------SRHCGHC 70 80 90 100 130 140 150 pF1KE1 PEEWITYSNSCYYIGKERRTWEERVCWPVLRRTLICFL ::::::::::::::::::::::: NP_998 PEEWITYSNSCYYIGKERRTWEESLLACTSKNSSLLSIDNEEEMKFLSIISPSSWIGVFR 110 120 130 140 150 160 >>NP_015567 (OMIM: 161555) NKG2-A/NKG2-B type II integra (215 aa) initn: 566 init1: 346 opt: 364 Z-score: 459.6 bits: 91.7 E(85289): 7.3e-19 Smith-Waterman score: 552; 61.5% identity (74.8% similar) in 143 aa overlap (1-143:1-124) 10 20 30 40 50 60 pF1KE1 MNKQRGTYSEVSLAQDPKRQQRKLKGNKISISGTKQEIFQVELNLQNASSDHQGNDKTYH :..: ::...: .::::::: :::: :: .:.::: .:::::.::.: :::::::: NP_015 MDNQGVIYSDLNLPPNPKRQQRKPKGNKSSILATEQEITYAELNLQKASQDFQGNDKTYH 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 CKGLLPPPEKLTAEVLGIICIVLMATVLKTIVLIPCIGVLEQNNFSLNRRMQKARHCGHC :: : :::: . .:::::..:::.:. :::.:: .:::::: NP_015 CKDLPSAPEKLIVGILGIICLILMASVV-TIVVIP------------------SRHCGHC 70 80 90 100 130 140 150 pF1KE1 PEEWITYSNSCYYIGKERRTWEERVCWPVLRRTLICFL ::::::::::::::::::::::: NP_015 PEEWITYSNSCYYIGKERRTWEESLLACTSKNSSLLSIDNEEEMKFLSIISPSSWIGVFR 110 120 130 140 150 160 >>NP_001107868 (OMIM: 602894) natural killer cells antig (179 aa) initn: 171 init1: 126 opt: 163 Z-score: 210.8 bits: 45.4 E(85289): 5.3e-05 Smith-Waterman score: 166; 34.1% identity (57.6% similar) in 85 aa overlap (70-143:10-84) 40 50 60 70 80 90 pF1KE1 QVELNLQNASSDHQGNDKTYHCKGLLPPPEKLTAEVLGIICIVLMATVLKTIVLIPCIGV .: . .:::::. :::: .:. NP_001 MAVFKTTLWRLISGTLGIICLSLMAT----------LGI 10 20 100 110 120 130 140 pF1KE1 LEQNNFSL-----------NRRMQKARHCGHCPEEWITYSNSCYYIGKERRTWEERVCWP : .:.:. : ..:: : : :.:. : .::.:..:..::.: NP_001 LLKNSFTKLSIEPAFTPGPNIELQKDSDCCSCQEKWVGYRCNCYFISSEQKTWNESRHLC 30 40 50 60 70 80 150 pF1KE1 VLRRTLICFL NP_001 ASQKSSLLQLQNTDELDFMSSSQQFYWIGLSYSEEHTAWLWENGSALSQYLFPSFETFNT 90 100 110 120 130 140 158 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 00:59:17 2016 done: Mon Nov 7 00:59:17 2016 Total Scan time: 5.440 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]