FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6248, 213 aa 1>>>pF1KE6248 213 - 213 aa - 213 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.9415+/-0.000335; mu= 7.0306+/- 0.021 mean_var=121.7451+/-24.197, 0's: 0 Z-trim(118.2): 4 B-trim: 582 in 1/54 Lambda= 0.116238 statistics sampled from 30839 (30843) to 30839 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.723), E-opt: 0.2 (0.362), width: 16 Scan time: 5.140 The best scores are: opt bits E(85289) XP_016869449 (OMIM: 605772) PREDICTED: receptor-bi ( 213) 1410 246.8 2e-65 NP_001265867 (OMIM: 605772) receptor-binding cance ( 213) 1410 246.8 2e-65 NP_936056 (OMIM: 605772) receptor-binding cancer a ( 213) 1410 246.8 2e-65 NP_004206 (OMIM: 605772) receptor-binding cancer a ( 213) 1410 246.8 2e-65 >>XP_016869449 (OMIM: 605772) PREDICTED: receptor-bindin (213 aa) initn: 1410 init1: 1410 opt: 1410 Z-score: 1295.7 bits: 246.8 E(85289): 2e-65 Smith-Waterman score: 1410; 100.0% identity (100.0% similar) in 213 aa overlap (1-213:1-213) 10 20 30 40 50 60 pF1KE6 MAITQFRLFKFCTCLATVFSFLKRLICRSGRGRKLSGDQITLPTTVDYSSVPKQTDVEEW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MAITQFRLFKFCTCLATVFSFLKRLICRSGRGRKLSGDQITLPTTVDYSSVPKQTDVEEW 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 TSWDEDAPTSVKIEGGNGNVATQQNSLEQLEPDYFKDMTPTIRKTQKIVIKKREPLNFGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 TSWDEDAPTSVKIEGGNGNVATQQNSLEQLEPDYFKDMTPTIRKTQKIVIKKREPLNFGI 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 PDGSTGFSSRLAATQDLPFIHQSSELGDLDTWQENTNAWEEEEDAAWQAEEVLRQQKLAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 PDGSTGFSSRLAATQDLPFIHQSSELGDLDTWQENTNAWEEEEDAAWQAEEVLRQQKLAD 130 140 150 160 170 180 190 200 210 pF1KE6 REKRAAEQQRKKMEKEAQRLMKKEQNKIGVKLS ::::::::::::::::::::::::::::::::: XP_016 REKRAAEQQRKKMEKEAQRLMKKEQNKIGVKLS 190 200 210 >>NP_001265867 (OMIM: 605772) receptor-binding cancer an (213 aa) initn: 1410 init1: 1410 opt: 1410 Z-score: 1295.7 bits: 246.8 E(85289): 2e-65 Smith-Waterman score: 1410; 100.0% identity (100.0% similar) in 213 aa overlap (1-213:1-213) 10 20 30 40 50 60 pF1KE6 MAITQFRLFKFCTCLATVFSFLKRLICRSGRGRKLSGDQITLPTTVDYSSVPKQTDVEEW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MAITQFRLFKFCTCLATVFSFLKRLICRSGRGRKLSGDQITLPTTVDYSSVPKQTDVEEW 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 TSWDEDAPTSVKIEGGNGNVATQQNSLEQLEPDYFKDMTPTIRKTQKIVIKKREPLNFGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TSWDEDAPTSVKIEGGNGNVATQQNSLEQLEPDYFKDMTPTIRKTQKIVIKKREPLNFGI 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 PDGSTGFSSRLAATQDLPFIHQSSELGDLDTWQENTNAWEEEEDAAWQAEEVLRQQKLAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PDGSTGFSSRLAATQDLPFIHQSSELGDLDTWQENTNAWEEEEDAAWQAEEVLRQQKLAD 130 140 150 160 170 180 190 200 210 pF1KE6 REKRAAEQQRKKMEKEAQRLMKKEQNKIGVKLS ::::::::::::::::::::::::::::::::: NP_001 REKRAAEQQRKKMEKEAQRLMKKEQNKIGVKLS 190 200 210 >>NP_936056 (OMIM: 605772) receptor-binding cancer antig (213 aa) initn: 1410 init1: 1410 opt: 1410 Z-score: 1295.7 bits: 246.8 E(85289): 2e-65 Smith-Waterman score: 1410; 100.0% identity (100.0% similar) in 213 aa overlap (1-213:1-213) 10 20 30 40 50 60 pF1KE6 MAITQFRLFKFCTCLATVFSFLKRLICRSGRGRKLSGDQITLPTTVDYSSVPKQTDVEEW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_936 MAITQFRLFKFCTCLATVFSFLKRLICRSGRGRKLSGDQITLPTTVDYSSVPKQTDVEEW 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 TSWDEDAPTSVKIEGGNGNVATQQNSLEQLEPDYFKDMTPTIRKTQKIVIKKREPLNFGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_936 TSWDEDAPTSVKIEGGNGNVATQQNSLEQLEPDYFKDMTPTIRKTQKIVIKKREPLNFGI 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 PDGSTGFSSRLAATQDLPFIHQSSELGDLDTWQENTNAWEEEEDAAWQAEEVLRQQKLAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_936 PDGSTGFSSRLAATQDLPFIHQSSELGDLDTWQENTNAWEEEEDAAWQAEEVLRQQKLAD 130 140 150 160 170 180 190 200 210 pF1KE6 REKRAAEQQRKKMEKEAQRLMKKEQNKIGVKLS ::::::::::::::::::::::::::::::::: NP_936 REKRAAEQQRKKMEKEAQRLMKKEQNKIGVKLS 190 200 210 >>NP_004206 (OMIM: 605772) receptor-binding cancer antig (213 aa) initn: 1410 init1: 1410 opt: 1410 Z-score: 1295.7 bits: 246.8 E(85289): 2e-65 Smith-Waterman score: 1410; 100.0% identity (100.0% similar) in 213 aa overlap (1-213:1-213) 10 20 30 40 50 60 pF1KE6 MAITQFRLFKFCTCLATVFSFLKRLICRSGRGRKLSGDQITLPTTVDYSSVPKQTDVEEW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 MAITQFRLFKFCTCLATVFSFLKRLICRSGRGRKLSGDQITLPTTVDYSSVPKQTDVEEW 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 TSWDEDAPTSVKIEGGNGNVATQQNSLEQLEPDYFKDMTPTIRKTQKIVIKKREPLNFGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 TSWDEDAPTSVKIEGGNGNVATQQNSLEQLEPDYFKDMTPTIRKTQKIVIKKREPLNFGI 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 PDGSTGFSSRLAATQDLPFIHQSSELGDLDTWQENTNAWEEEEDAAWQAEEVLRQQKLAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 PDGSTGFSSRLAATQDLPFIHQSSELGDLDTWQENTNAWEEEEDAAWQAEEVLRQQKLAD 130 140 150 160 170 180 190 200 210 pF1KE6 REKRAAEQQRKKMEKEAQRLMKKEQNKIGVKLS ::::::::::::::::::::::::::::::::: NP_004 REKRAAEQQRKKMEKEAQRLMKKEQNKIGVKLS 190 200 210 213 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 11:26:44 2016 done: Tue Nov 8 11:26:45 2016 Total Scan time: 5.140 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]