FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6248, 213 aa
  1>>>pF1KE6248 213 - 213 aa - 213 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.7606+/-0.00081; mu= 8.1530+/- 0.049
 mean_var=113.6427+/-22.562, 0's: 0 Z-trim(110.8): 12  B-trim: 151 in 1/52
 Lambda= 0.120310
 statistics sampled from 11918 (11919) to 11918 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.73), E-opt: 0.2 (0.366), width:  16
 Scan time:  1.610

The best scores are:                                      opt bits E(32554)
CCDS6313.1 EBAG9 gene_id:9166|Hs108|chr8           ( 213) 1410 254.8   3e-68


>>CCDS6313.1 EBAG9 gene_id:9166|Hs108|chr8                (213 aa)
 initn: 1410 init1: 1410 opt: 1410  Z-score: 1338.8  bits: 254.8 E(32554): 3e-68
Smith-Waterman score: 1410; 100.0% identity (100.0% similar) in 213 aa overlap (1-213:1-213)

               10        20        30        40        50        60
pF1KE6 MAITQFRLFKFCTCLATVFSFLKRLICRSGRGRKLSGDQITLPTTVDYSSVPKQTDVEEW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 MAITQFRLFKFCTCLATVFSFLKRLICRSGRGRKLSGDQITLPTTVDYSSVPKQTDVEEW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 TSWDEDAPTSVKIEGGNGNVATQQNSLEQLEPDYFKDMTPTIRKTQKIVIKKREPLNFGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 TSWDEDAPTSVKIEGGNGNVATQQNSLEQLEPDYFKDMTPTIRKTQKIVIKKREPLNFGI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 PDGSTGFSSRLAATQDLPFIHQSSELGDLDTWQENTNAWEEEEDAAWQAEEVLRQQKLAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 PDGSTGFSSRLAATQDLPFIHQSSELGDLDTWQENTNAWEEEEDAAWQAEEVLRQQKLAD
              130       140       150       160       170       180

              190       200       210   
pF1KE6 REKRAAEQQRKKMEKEAQRLMKKEQNKIGVKLS
       :::::::::::::::::::::::::::::::::
CCDS63 REKRAAEQQRKKMEKEAQRLMKKEQNKIGVKLS
              190       200       210   




213 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 11:26:44 2016 done: Tue Nov  8 11:26:44 2016
 Total Scan time:  1.610 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]