FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4456, 475 aa 1>>>pF1KE4456 475 - 475 aa - 475 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.9973+/-0.00107; mu= 13.7120+/- 0.064 mean_var=63.1739+/-12.606, 0's: 0 Z-trim(102.7): 25 B-trim: 0 in 0/49 Lambda= 0.161364 statistics sampled from 7047 (7064) to 7047 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.582), E-opt: 0.2 (0.217), width: 16 Scan time: 2.070 The best scores are: opt bits E(32554) CCDS1722.1 HADHB gene_id:3032|Hs108|chr2 ( 474) 3068 723.2 1.4e-208 CCDS62872.1 HADHB gene_id:3032|Hs108|chr2 ( 452) 2834 668.8 3.3e-192 CCDS62871.1 HADHB gene_id:3032|Hs108|chr2 ( 459) 2531 598.2 5.8e-171 CCDS8339.1 ACAT1 gene_id:38|Hs108|chr11 ( 427) 257 68.8 1.2e-11 >>CCDS1722.1 HADHB gene_id:3032|Hs108|chr2 (474 aa) initn: 3068 init1: 3068 opt: 3068 Z-score: 3858.2 bits: 723.2 E(32554): 1.4e-208 Smith-Waterman score: 3068; 100.0% identity (100.0% similar) in 473 aa overlap (3-475:2-474) 10 20 30 40 50 60 pF1KE4 MTTILTYPFKNLPTASKWALRFSIRPLSCSSQLRAAPAVQTKTKKTLAKPNIRNVVVVDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS17 MTILTYPFKNLPTASKWALRFSIRPLSCSSQLRAAPAVQTKTKKTLAKPNIRNVVVVDG 10 20 30 40 50 70 80 90 100 110 120 pF1KE4 VRTPFLLSGTSYKDLMPHDLARAALTGLLHRTSVPKEVVDYIIFGTVIQEVKTSNVAREA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS17 VRTPFLLSGTSYKDLMPHDLARAALTGLLHRTSVPKEVVDYIIFGTVIQEVKTSNVAREA 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE4 ALGAGFSDKTPAHTVTMACISANQAMTTGVGLIASGQCDVIVAGGVELMSDVPIRHSRKM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS17 ALGAGFSDKTPAHTVTMACISANQAMTTGVGLIASGQCDVIVAGGVELMSDVPIRHSRKM 120 130 140 150 160 170 190 200 210 220 230 240 pF1KE4 RKLMLDLNKAKSMGQRLSLISKFRFNFLAPELPAVSEFSTSETMGHSADRLAAAFAVSRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS17 RKLMLDLNKAKSMGQRLSLISKFRFNFLAPELPAVSEFSTSETMGHSADRLAAAFAVSRL 180 190 200 210 220 230 250 260 270 280 290 300 pF1KE4 EQDEYALRSHSLAKKAQDEGLLSDVVPFKVPGKDTVTKDNGIRPSSLEQMAKLKPAFIKP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS17 EQDEYALRSHSLAKKAQDEGLLSDVVPFKVPGKDTVTKDNGIRPSSLEQMAKLKPAFIKP 240 250 260 270 280 290 310 320 330 340 350 360 pF1KE4 YGTVTAANSSFLTDGASAMLIMAEEKALAMGYKPKAYLRDFMYVSQDPKDQLLLGPTYAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS17 YGTVTAANSSFLTDGASAMLIMAEEKALAMGYKPKAYLRDFMYVSQDPKDQLLLGPTYAT 300 310 320 330 340 350 370 380 390 400 410 420 pF1KE4 PKVLEKAGLTMNDIDAFEFHEAFSGQILANFKAMDSDWFAENYMGRKTKVGLPPLEKFNN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS17 PKVLEKAGLTMNDIDAFEFHEAFSGQILANFKAMDSDWFAENYMGRKTKVGLPPLEKFNN 360 370 380 390 400 410 430 440 450 460 470 pF1KE4 WGGSLSLGHPFGATGCRLVMAAANRLRKEGGQYGLVAACAAGGQGHAMIVEAYPK ::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS17 WGGSLSLGHPFGATGCRLVMAAANRLRKEGGQYGLVAACAAGGQGHAMIVEAYPK 420 430 440 450 460 470 >>CCDS62872.1 HADHB gene_id:3032|Hs108|chr2 (452 aa) initn: 2834 init1: 2834 opt: 2834 Z-score: 3564.1 bits: 668.8 E(32554): 3.3e-192 Smith-Waterman score: 2834; 100.0% identity (100.0% similar) in 438 aa overlap (38-475:15-452) 10 20 30 40 50 60 pF1KE4 PFKNLPTASKWALRFSIRPLSCSSQLRAAPAVQTKTKKTLAKPNIRNVVVVDGVRTPFLL :::::::::::::::::::::::::::::: CCDS62 MTLVSGWLLYGWIIAVQTKTKKTLAKPNIRNVVVVDGVRTPFLL 10 20 30 40 70 80 90 100 110 120 pF1KE4 SGTSYKDLMPHDLARAALTGLLHRTSVPKEVVDYIIFGTVIQEVKTSNVAREAALGAGFS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS62 SGTSYKDLMPHDLARAALTGLLHRTSVPKEVVDYIIFGTVIQEVKTSNVAREAALGAGFS 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE4 DKTPAHTVTMACISANQAMTTGVGLIASGQCDVIVAGGVELMSDVPIRHSRKMRKLMLDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS62 DKTPAHTVTMACISANQAMTTGVGLIASGQCDVIVAGGVELMSDVPIRHSRKMRKLMLDL 110 120 130 140 150 160 190 200 210 220 230 240 pF1KE4 NKAKSMGQRLSLISKFRFNFLAPELPAVSEFSTSETMGHSADRLAAAFAVSRLEQDEYAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS62 NKAKSMGQRLSLISKFRFNFLAPELPAVSEFSTSETMGHSADRLAAAFAVSRLEQDEYAL 170 180 190 200 210 220 250 260 270 280 290 300 pF1KE4 RSHSLAKKAQDEGLLSDVVPFKVPGKDTVTKDNGIRPSSLEQMAKLKPAFIKPYGTVTAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS62 RSHSLAKKAQDEGLLSDVVPFKVPGKDTVTKDNGIRPSSLEQMAKLKPAFIKPYGTVTAA 230 240 250 260 270 280 310 320 330 340 350 360 pF1KE4 NSSFLTDGASAMLIMAEEKALAMGYKPKAYLRDFMYVSQDPKDQLLLGPTYATPKVLEKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS62 NSSFLTDGASAMLIMAEEKALAMGYKPKAYLRDFMYVSQDPKDQLLLGPTYATPKVLEKA 290 300 310 320 330 340 370 380 390 400 410 420 pF1KE4 GLTMNDIDAFEFHEAFSGQILANFKAMDSDWFAENYMGRKTKVGLPPLEKFNNWGGSLSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS62 GLTMNDIDAFEFHEAFSGQILANFKAMDSDWFAENYMGRKTKVGLPPLEKFNNWGGSLSL 350 360 370 380 390 400 430 440 450 460 470 pF1KE4 GHPFGATGCRLVMAAANRLRKEGGQYGLVAACAAGGQGHAMIVEAYPK :::::::::::::::::::::::::::::::::::::::::::::::: CCDS62 GHPFGATGCRLVMAAANRLRKEGGQYGLVAACAAGGQGHAMIVEAYPK 410 420 430 440 450 >>CCDS62871.1 HADHB gene_id:3032|Hs108|chr2 (459 aa) initn: 2531 init1: 2531 opt: 2531 Z-score: 3182.8 bits: 598.2 E(32554): 5.8e-171 Smith-Waterman score: 2929; 96.8% identity (96.8% similar) in 473 aa overlap (3-475:2-459) 10 20 30 40 50 60 pF1KE4 MTTILTYPFKNLPTASKWALRFSIRPLSCSSQLRAAPAVQTKTKKTLAKPNIRNVVVVDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS62 MTILTYPFKNLPTASKWALRFSIRPLSCSSQLRAAPAVQTKTKKTLAKPNIRNVVVVDG 10 20 30 40 50 70 80 90 100 110 120 pF1KE4 VRTPFLLSGTSYKDLMPHDLARAALTGLLHRTSVPKEVVDYIIFGTVIQEVKTSNVAREA ::::::::::: :::::::::::::::::::::::::::::::::: CCDS62 VRTPFLLSGTS---------------GLLHRTSVPKEVVDYIIFGTVIQEVKTSNVAREA 60 70 80 90 100 130 140 150 160 170 180 pF1KE4 ALGAGFSDKTPAHTVTMACISANQAMTTGVGLIASGQCDVIVAGGVELMSDVPIRHSRKM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS62 ALGAGFSDKTPAHTVTMACISANQAMTTGVGLIASGQCDVIVAGGVELMSDVPIRHSRKM 110 120 130 140 150 160 190 200 210 220 230 240 pF1KE4 RKLMLDLNKAKSMGQRLSLISKFRFNFLAPELPAVSEFSTSETMGHSADRLAAAFAVSRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS62 RKLMLDLNKAKSMGQRLSLISKFRFNFLAPELPAVSEFSTSETMGHSADRLAAAFAVSRL 170 180 190 200 210 220 250 260 270 280 290 300 pF1KE4 EQDEYALRSHSLAKKAQDEGLLSDVVPFKVPGKDTVTKDNGIRPSSLEQMAKLKPAFIKP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS62 EQDEYALRSHSLAKKAQDEGLLSDVVPFKVPGKDTVTKDNGIRPSSLEQMAKLKPAFIKP 230 240 250 260 270 280 310 320 330 340 350 360 pF1KE4 YGTVTAANSSFLTDGASAMLIMAEEKALAMGYKPKAYLRDFMYVSQDPKDQLLLGPTYAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS62 YGTVTAANSSFLTDGASAMLIMAEEKALAMGYKPKAYLRDFMYVSQDPKDQLLLGPTYAT 290 300 310 320 330 340 370 380 390 400 410 420 pF1KE4 PKVLEKAGLTMNDIDAFEFHEAFSGQILANFKAMDSDWFAENYMGRKTKVGLPPLEKFNN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS62 PKVLEKAGLTMNDIDAFEFHEAFSGQILANFKAMDSDWFAENYMGRKTKVGLPPLEKFNN 350 360 370 380 390 400 430 440 450 460 470 pF1KE4 WGGSLSLGHPFGATGCRLVMAAANRLRKEGGQYGLVAACAAGGQGHAMIVEAYPK ::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS62 WGGSLSLGHPFGATGCRLVMAAANRLRKEGGQYGLVAACAAGGQGHAMIVEAYPK 410 420 430 440 450 >>CCDS8339.1 ACAT1 gene_id:38|Hs108|chr11 (427 aa) initn: 640 init1: 250 opt: 257 Z-score: 322.3 bits: 68.8 E(32554): 1.2e-11 Smith-Waterman score: 649; 31.9% identity (60.9% similar) in 445 aa overlap (34-471:21-425) 10 20 30 40 50 60 pF1KE4 ILTYPFKNLPTASKWALRFSIRPLSCSSQLRAAPAVQTKTKKTLAKPNIRNVVVVDGVRT : . .. .. ..::....::.:...:: CCDS83 MAVLAALLRSGARSRSPLLRRLVQEIRYVERSYVSKPTLKEVVIVSATRT 10 20 30 40 50 70 80 90 100 110 120 pF1KE4 PFLLSGTSYKDLMPHD-LARAALTGLLHRTSVPKEVVDYIIFGTVIQEVKTSNVAREAAL : . : . .:.: :. :. : ......::: : .:.:.: . . .:.:.: CCDS83 P-IGSFLGSLSLLPATKLGSIAIQGAIEKAGIPKEEVKEAYMGNVLQGGEGQAPTRQAVL 60 70 80 90 100 130 140 150 160 170 180 pF1KE4 GAGFSDKTPAHTVTMACISANQAMTTGVGLIASGQCDVIVAGGVELMSDVPIRHSRKMRK :::. .:: :.. .: :. .:. . . :. ::.::::.: ::.:: .: CCDS83 GAGLPISTPCTTINKVCASGMKAIMMASQSLMCGHQDVMVAGGMESMSNVPYVMNR---- 110 120 130 140 150 160 190 200 210 220 230 240 pF1KE4 LMLDLNKAKSMGQRL-SLISKFRFNFLAPELPAVSEFSTSETMGHSADRLAAAFAVSRLE ... : .: .:: : .... .. :: :. : . ..: : CCDS83 -----GSTPYGGVKLEDLIVK----------DGLTDVYNKIHMGSCAENTAKKLNIARNE 170 180 190 200 210 250 260 270 280 290 pF1KE4 QDEYALRSHSLAKKAQDEGLL-SDVVPFKVPGK---DTVTK-DNGIRPSSLEQMAKLKPA :: ::. :.. .: : . : . ..:.: : : :.:.: :. . .. .. ::: . CCDS83 QDAYAINSYTRSKAAWEAGKFGNEVIPVTVTVKGQPDVVVKEDEEYKRVDFSKVPKLKTV 220 230 240 250 260 270 300 310 320 330 340 350 pF1KE4 FIKPYGTVTAANSSFLTDGASAMLIMAEEKALAMGYKPKAYLRDFMYVSQDPKDQLLLGP : : :::::::.: :.:::.:...:. . : .. : : . : .. .: : . ..: CCDS83 FQKENGTVTAANASTLNDGAAALVLMTADAAKRLNVTPLARIVAFADAAVEPID-FPIAP 280 290 300 310 320 360 370 380 390 400 410 pF1KE4 TYATPKVLEKAGLTMNDIDAFEFHEAFSGQILANFKAMDSDWFAENYMGRKTKVGLPPLE .::. ::. .:: .:: .: .:::: .:::.: .. : : . CCDS83 VYAASMVLKDVGLKKEDIAMWEVNEAFSLVVLANIKMLEID---------------P--Q 330 340 350 360 370 420 430 440 450 460 470 pF1KE4 KFNNWGGSLSLGHPFGATGCRLVMAAANRLRKEGGQYGLVAACAAGGQGHAMIVEAYPK : : ::..:::::.: .: :.: .. :.. :.:::.. : .:: . ::... CCDS83 KVNINGGAVSLGHPIGMSGARIVGHLTHALKQ--GEYGLASICNGGGGASAMLIQKL 380 390 400 410 420 475 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 00:59:50 2016 done: Sun Nov 6 00:59:50 2016 Total Scan time: 2.070 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]