FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB0986, 454 aa 1>>>pF1KB0986 454 - 454 aa - 454 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.5671+/-0.00106; mu= 3.3303+/- 0.063 mean_var=200.1528+/-40.197, 0's: 0 Z-trim(110.1): 47 B-trim: 0 in 0/52 Lambda= 0.090655 statistics sampled from 11305 (11342) to 11305 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.695), E-opt: 0.2 (0.348), width: 16 Scan time: 3.560 The best scores are: opt bits E(32554) CCDS32404.1 CDR2 gene_id:1039|Hs108|chr16 ( 454) 2907 392.9 3.5e-109 CCDS11710.2 CDR2L gene_id:30850|Hs108|chr17 ( 465) 1007 144.4 2.3e-34 >>CCDS32404.1 CDR2 gene_id:1039|Hs108|chr16 (454 aa) initn: 2907 init1: 2907 opt: 2907 Z-score: 2073.6 bits: 392.9 E(32554): 3.5e-109 Smith-Waterman score: 2907; 100.0% identity (100.0% similar) in 454 aa overlap (1-454:1-454) 10 20 30 40 50 60 pF1KB0 MLAENLVEEFEMKEDEPWYDHQDLQQDLQLAAELGKTLLDRNTELEDSVQQMYTTNQEQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 MLAENLVEEFEMKEDEPWYDHQDLQQDLQLAAELGKTLLDRNTELEDSVQQMYTTNQEQL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB0 QEIEYLTKQVELLRQMNEQHAKVYEQLDVTARELEETNQKLVADSKASQQKILSLTETIE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 QEIEYLTKQVELLRQMNEQHAKVYEQLDVTARELEETNQKLVADSKASQQKILSLTETIE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB0 CLQTNIDHLQSQVEELKSSGQGRRSPGKCDQEKPAPSFACLKELYDLRQHFVYDHVFAEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 CLQTNIDHLQSQVEELKSSGQGRRSPGKCDQEKPAPSFACLKELYDLRQHFVYDHVFAEK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB0 ITSLQGQPSPDEEENEHLKKTVTMLQAQLSLERQKRVTMEEEYGLVLKENSELEQQLGAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 ITSLQGQPSPDEEENEHLKKTVTMLQAQLSLERQKRVTMEEEYGLVLKENSELEQQLGAT 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB0 GAYRARALELEAEVAEMRQMLQSEHPFVNGVEKLVPDSLYVPFKEPSQSLLEEMFLTVPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 GAYRARALELEAEVAEMRQMLQSEHPFVNGVEKLVPDSLYVPFKEPSQSLLEEMFLTVPE 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB0 SHRKPLKRSSSETILSSLAGSDIVKGHEETCIRRAKAVKQRGISLLHEVDTQYSALKVKY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 SHRKPLKRSSSETILSSLAGSDIVKGHEETCIRRAKAVKQRGISLLHEVDTQYSALKVKY 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB0 EELLKKCQEEQDSLSHKAVQTSRAAAKDLTGVNAQSEPVASGWELASVNPEPVSSPTTPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 EELLKKCQEEQDSLSHKAVQTSRAAAKDLTGVNAQSEPVASGWELASVNPEPVSSPTTPP 370 380 390 400 410 420 430 440 450 pF1KB0 EYKALFKEIFSCIKKTKQEIDEQRTKYRSLSSHS :::::::::::::::::::::::::::::::::: CCDS32 EYKALFKEIFSCIKKTKQEIDEQRTKYRSLSSHS 430 440 450 >>CCDS11710.2 CDR2L gene_id:30850|Hs108|chr17 (465 aa) initn: 1091 init1: 626 opt: 1007 Z-score: 730.5 bits: 144.4 E(32554): 2.3e-34 Smith-Waterman score: 1107; 45.0% identity (71.0% similar) in 462 aa overlap (7-449:7-463) 10 20 30 40 50 60 pF1KB0 MLAENLVEEFEMKEDEPWYDHQDLQQDLQLAAELGKTLLDRNTELEDSVQQMYTTNQEQL .:.: .:.: :::.:::.:::.::::::::::.:: ::: :.::::.::.::. CCDS11 MRRAAGMEDFSAEEEESWYDQQDLEQDLHLAAELGKTLLERNKELEGSLQQMYSTNEEQV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB0 QEIEYLTKQVELLRQMNEQHAKVYEQLDVTARELEETNQKLVADSKASQQKILSLTETIE :::::::::.. ::..::::::::::::.:::.:: ::..:: .:::.:::: .:::::: CCDS11 QEIEYLTKQLDTLRHVNEQHAKVYEQLDLTARDLELTNHRLVLESKAAQQKIHGLTETIE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB0 CLQTNIDHLQSQVEELKSSGQGRRSPGKCDQEKPAPSFACLKELYDLRQHFVYDHVFAEK ::.....::.:::.:.. : : : .... .: ::::: . : .: . CCDS11 RLQAQVEELQAQVEQLRGLEQLRVLREKRERRRTIHTFPCLKEL--CTSPRCKD-AFRLH 130 140 150 160 170 190 200 210 220 230 240 pF1KB0 ITSLQGQPSPDEEENEHLKKTVTMLQAQLSLERQKRVTMEEEYGLVLKENSELEQQLGAT .::. : : :.:::.:. : :..:.: :::.. :.:: ::.: ::::.:: CCDS11 SSSLELGPRPLEQENERLQTLVGALRSQVSQERQRKERAEREYTAVLQEYSELERQLCEM 180 190 200 210 220 230 250 260 270 280 290 pF1KB0 GAYRARALELEAEVAEMRQMLQSEHPFVNGVEKLVPDSLYVPFKEPSQS----------L : : :. :::::. :..:: :.. .. : . . ..: .:. . .. : CCDS11 EACRLRVQELEAELLELQQMKQAK-TYLLGPDDHLAEALLAPLTQAPEADDPQPGRGDDL 240 250 260 270 280 290 300 310 320 330 340 pF1KB0 LEEMFLTVPE-SHRKPLKRSSSETILSSLAGSDIVKGHEETCIRRAKAVKQRGISLLHEV . .. : : . ...: :.: :......: .. : . .:..:..::.:.:.:: CCDS11 GAQDGVSSPAASPGHVVRKSCSDTALNAIVAKDPASRHAGNLTLHANSVRKRGMSILREV 300 310 320 330 340 350 350 360 370 380 390 400 pF1KB0 DTQYSALKVKYEELLKKCQEEQDSLSHKAVQTSRAAAKDLT------GVNAQSEPVASGW : :: :: ::::::.::... .. : .::::: ..: . : ..:.: : .: CCDS11 DEQYHALLEKYEELLSKCRQHGAGVRHAGVQTSRPISRDSSWRDLRGGEEGQGE-VKAGE 360 370 380 390 400 410 410 420 430 440 450 pF1KB0 ELASVNPEPVSS--PTTPPEYKALFKEIFSCIKKTKQEIDEQRTKYRSLSSHS . : . : :.. . :::::::::::: :.::: .:. ..: .: CCDS11 KSLSQHVEAVDKRLEQSQPEYKALFKEIFSRIQKTKADINATKVKTHSSK 420 430 440 450 460 454 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 17:41:08 2016 done: Sat Nov 5 17:41:08 2016 Total Scan time: 3.560 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]