FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6429, 595 aa 1>>>pF1KE6429 595 - 595 aa - 595 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 10.3313+/-0.000546; mu= -5.6432+/- 0.033 mean_var=286.6593+/-61.498, 0's: 0 Z-trim(115.3): 35 B-trim: 291 in 1/52 Lambda= 0.075752 statistics sampled from 25688 (25719) to 25688 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.652), E-opt: 0.2 (0.302), width: 16 Scan time: 7.390 The best scores are: opt bits E(85289) NP_001294869 (OMIM: 300603,300604) protein POF1B i ( 595) 3977 449.0 2e-125 NP_079197 (OMIM: 300603,300604) protein POF1B isof ( 589) 3931 444.0 6.6e-124 XP_005262260 (OMIM: 300603,300604) PREDICTED: prot ( 574) 2596 298.1 5.4e-80 >>NP_001294869 (OMIM: 300603,300604) protein POF1B isofo (595 aa) initn: 3977 init1: 3977 opt: 3977 Z-score: 2372.6 bits: 449.0 E(85289): 2e-125 Smith-Waterman score: 3977; 99.8% identity (100.0% similar) in 595 aa overlap (1-595:1-595) 10 20 30 40 50 60 pF1KE6 MSSSYWSETSSSSCGTQQLPEVLQCQPQHYHCYHQSSQAQQPPEKNVVYERVRTYSGPMN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MSSSYWSETSSSSCGTQQLPEVLQCQPQHYHCYHQSSQAQQPPEKNVVYERVRTYSGPMN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 KVVQALDPFNSREVLSPLKTTSSYQNLVWSDHSQELHSPTLKISTCAPSTLHITQNTEQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KVVQALDPFNSREVLSPLKTTSSYQNLVWSDHSQELHSPTLKISTCAPSTLHITQNTEQE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 LHSPTVKLTTYPQTTIRKYVVQNPEQEPLSQFLRGSHFFPGNNVIYEKTIRKVEKLNTDQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LHSPTVKLTTYPQTTIRKYVVQNPEQEPLSQFLRGSHFFPGNNVIYEKTIRKVEKLNTDQ 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 GCHPQAQCHHHIIQQPQVIHSAHWQQPDSSQQIQAITGNNPISTHIGNELCHSGSSQICE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GCHPQAQCHHHIIQQPQVIHSAHWQQPDSSQQIQAITGNNPISTHIGNELCHSGSSQICE 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 QVIIQDDGPEKLDPRYFGELLADLSRKNTDLYHCLLEHLQRIGGSKQDFESTDESEDIES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QVIIQDDGPEKLDPRYFGELLADLSRKNTDLYHCLLEHLQRIGGSKQDFESTDESEDIES 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE6 LIPKGLSEFTKQQIRYILQMRGMSDKSLRLVLSTFSNIREELGHLQNDLTSLENDKMRLE ::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::: NP_001 LIPKGLSEFTKQQIRYILQMRGMSDKSLRLVLSTFSNIREELGHLQNDMTSLENDKMRLE 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE6 KDLSFKDTQLKEYEELLASVRANNHQQQQGLQDSSSKCQALEENNLSLRHTLSDMEYRLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KDLSFKDTQLKEYEELLASVRANNHQQQQGLQDSSSKCQALEENNLSLRHTLSDMEYRLK 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE6 ELEYCKRNLEQENQNLRMQVSETCTGPMLQAKMDEIGNHYTEMVKNLRMEKDREICRLRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ELEYCKRNLEQENQNLRMQVSETCTGPMLQAKMDEIGNHYTEMVKNLRMEKDREICRLRS 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE6 QLNQYHKDVSKREGSCSDFQFKLHELTSLLEEKDSLIKRQSEELSKLRQEIYSSHNQPST :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QLNQYHKDVSKREGSCSDFQFKLHELTSLLEEKDSLIKRQSEELSKLRQEIYSSHNQPST 490 500 510 520 530 540 550 560 570 580 590 pF1KE6 GGRTTITTKKYRTQYPILGLLYDDYEYIPPGSETQTIVIEKTEDKYTCVSSLGHF ::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GGRTTITTKKYRTQYPILGLLYDDYEYIPPGSETQTIVIEKTEDKYTCVSSLGHF 550 560 570 580 590 >>NP_079197 (OMIM: 300603,300604) protein POF1B isoform (589 aa) initn: 3931 init1: 3931 opt: 3931 Z-score: 2345.5 bits: 444.0 E(85289): 6.6e-124 Smith-Waterman score: 3931; 99.8% identity (100.0% similar) in 588 aa overlap (1-588:1-588) 10 20 30 40 50 60 pF1KE6 MSSSYWSETSSSSCGTQQLPEVLQCQPQHYHCYHQSSQAQQPPEKNVVYERVRTYSGPMN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 MSSSYWSETSSSSCGTQQLPEVLQCQPQHYHCYHQSSQAQQPPEKNVVYERVRTYSGPMN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 KVVQALDPFNSREVLSPLKTTSSYQNLVWSDHSQELHSPTLKISTCAPSTLHITQNTEQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 KVVQALDPFNSREVLSPLKTTSSYQNLVWSDHSQELHSPTLKISTCAPSTLHITQNTEQE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 LHSPTVKLTTYPQTTIRKYVVQNPEQEPLSQFLRGSHFFPGNNVIYEKTIRKVEKLNTDQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 LHSPTVKLTTYPQTTIRKYVVQNPEQEPLSQFLRGSHFFPGNNVIYEKTIRKVEKLNTDQ 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 GCHPQAQCHHHIIQQPQVIHSAHWQQPDSSQQIQAITGNNPISTHIGNELCHSGSSQICE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 GCHPQAQCHHHIIQQPQVIHSAHWQQPDSSQQIQAITGNNPISTHIGNELCHSGSSQICE 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 QVIIQDDGPEKLDPRYFGELLADLSRKNTDLYHCLLEHLQRIGGSKQDFESTDESEDIES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 QVIIQDDGPEKLDPRYFGELLADLSRKNTDLYHCLLEHLQRIGGSKQDFESTDESEDIES 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE6 LIPKGLSEFTKQQIRYILQMRGMSDKSLRLVLSTFSNIREELGHLQNDLTSLENDKMRLE ::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::: NP_079 LIPKGLSEFTKQQIRYILQMRGMSDKSLRLVLSTFSNIREELGHLQNDMTSLENDKMRLE 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE6 KDLSFKDTQLKEYEELLASVRANNHQQQQGLQDSSSKCQALEENNLSLRHTLSDMEYRLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 KDLSFKDTQLKEYEELLASVRANNHQQQQGLQDSSSKCQALEENNLSLRHTLSDMEYRLK 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE6 ELEYCKRNLEQENQNLRMQVSETCTGPMLQAKMDEIGNHYTEMVKNLRMEKDREICRLRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 ELEYCKRNLEQENQNLRMQVSETCTGPMLQAKMDEIGNHYTEMVKNLRMEKDREICRLRS 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE6 QLNQYHKDVSKREGSCSDFQFKLHELTSLLEEKDSLIKRQSEELSKLRQEIYSSHNQPST :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 QLNQYHKDVSKREGSCSDFQFKLHELTSLLEEKDSLIKRQSEELSKLRQEIYSSHNQPST 490 500 510 520 530 540 550 560 570 580 590 pF1KE6 GGRTTITTKKYRTQYPILGLLYDDYEYIPPGSETQTIVIEKTEDKYTCVSSLGHF :::::::::::::::::::::::::::::::::::::::::::::::: NP_079 GGRTTITTKKYRTQYPILGLLYDDYEYIPPGSETQTIVIEKTEDKYTCP 550 560 570 580 >>XP_005262260 (OMIM: 300603,300604) PREDICTED: protein (574 aa) initn: 2596 init1: 2596 opt: 2596 Z-score: 1557.2 bits: 298.1 E(85289): 5.4e-80 Smith-Waterman score: 3764; 97.3% identity (97.4% similar) in 588 aa overlap (1-588:1-573) 10 20 30 40 50 60 pF1KE6 MSSSYWSETSSSSCGTQQLPEVLQCQPQHYHCYHQSSQAQQPPEKNVVYERVRTYSGPMN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MSSSYWSETSSSSCGTQQLPEVLQCQPQHYHCYHQSSQAQQPPEKNVVYERVRTYSGPMN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 KVVQALDPFNSREVLSPLKTTSSYQNLVWSDHSQELHSPTLKISTCAPSTLHITQNTEQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 KVVQALDPFNSREVLSPLKTTSSYQNLVWSDHSQELHSPTLKISTCAPSTLHITQNTEQE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 LHSPTVKLTTYPQTTIRKYVVQNPEQEPLSQFLRGSHFFPGNNVIYEKTIRKVEKLNTDQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 LHSPTVKLTTYPQTTIRKYVVQNPEQEPLSQFLRGSHFFPGNNVIYEKTIRKVEKLNTDQ 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 GCHPQAQCHHHIIQQPQVIHSAHWQQPDSSQQIQAITGNNPISTHIGNELCHSGSSQICE ::::::::::::::::::::::::::::::::::::::::::::: XP_005 ---------------PQVIHSAHWQQPDSSQQIQAITGNNPISTHIGNELCHSGSSQICE 190 200 210 220 250 260 270 280 290 300 pF1KE6 QVIIQDDGPEKLDPRYFGELLADLSRKNTDLYHCLLEHLQRIGGSKQDFESTDESEDIES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 QVIIQDDGPEKLDPRYFGELLADLSRKNTDLYHCLLEHLQRIGGSKQDFESTDESEDIES 230 240 250 260 270 280 310 320 330 340 350 360 pF1KE6 LIPKGLSEFTKQQIRYILQMRGMSDKSLRLVLSTFSNIREELGHLQNDLTSLENDKMRLE ::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::: XP_005 LIPKGLSEFTKQQIRYILQMRGMSDKSLRLVLSTFSNIREELGHLQNDMTSLENDKMRLE 290 300 310 320 330 340 370 380 390 400 410 420 pF1KE6 KDLSFKDTQLKEYEELLASVRANNHQQQQGLQDSSSKCQALEENNLSLRHTLSDMEYRLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 KDLSFKDTQLKEYEELLASVRANNHQQQQGLQDSSSKCQALEENNLSLRHTLSDMEYRLK 350 360 370 380 390 400 430 440 450 460 470 480 pF1KE6 ELEYCKRNLEQENQNLRMQVSETCTGPMLQAKMDEIGNHYTEMVKNLRMEKDREICRLRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 ELEYCKRNLEQENQNLRMQVSETCTGPMLQAKMDEIGNHYTEMVKNLRMEKDREICRLRS 410 420 430 440 450 460 490 500 510 520 530 540 pF1KE6 QLNQYHKDVSKREGSCSDFQFKLHELTSLLEEKDSLIKRQSEELSKLRQEIYSSHNQPST :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 QLNQYHKDVSKREGSCSDFQFKLHELTSLLEEKDSLIKRQSEELSKLRQEIYSSHNQPST 470 480 490 500 510 520 550 560 570 580 590 pF1KE6 GGRTTITTKKYRTQYPILGLLYDDYEYIPPGSETQTIVIEKTEDKYTCVSSLGHF :::::::::::::::::::::::::::::::::::::::::::::::: XP_005 GGRTTITTKKYRTQYPILGLLYDDYEYIPPGSETQTIVIEKTEDKYTCP 530 540 550 560 570 595 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 13:12:33 2016 done: Tue Nov 8 13:12:34 2016 Total Scan time: 7.390 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]