FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6429, 595 aa
  1>>>pF1KE6429 595 - 595 aa - 595 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.4269+/-0.0012; mu= -0.7072+/- 0.071
 mean_var=205.6204+/-42.011, 0's: 0 Z-trim(107.7): 56  B-trim: 74 in 1/51
 Lambda= 0.089442
 statistics sampled from 9723 (9751) to 9723 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.655), E-opt: 0.2 (0.3), width:  16
 Scan time:  2.650

The best scores are:                                      opt bits E(32554)
CCDS78497.1 POF1B gene_id:79983|Hs108|chrX         ( 595) 3977 526.5 3.7e-149
CCDS14452.1 POF1B gene_id:79983|Hs108|chrX         ( 589) 3931 520.6 2.2e-147


>>CCDS78497.1 POF1B gene_id:79983|Hs108|chrX              (595 aa)
 initn: 3977 init1: 3977 opt: 3977  Z-score: 2791.4  bits: 526.5 E(32554): 3.7e-149
Smith-Waterman score: 3977; 99.8% identity (100.0% similar) in 595 aa overlap (1-595:1-595)

               10        20        30        40        50        60
pF1KE6 MSSSYWSETSSSSCGTQQLPEVLQCQPQHYHCYHQSSQAQQPPEKNVVYERVRTYSGPMN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 MSSSYWSETSSSSCGTQQLPEVLQCQPQHYHCYHQSSQAQQPPEKNVVYERVRTYSGPMN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 KVVQALDPFNSREVLSPLKTTSSYQNLVWSDHSQELHSPTLKISTCAPSTLHITQNTEQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 KVVQALDPFNSREVLSPLKTTSSYQNLVWSDHSQELHSPTLKISTCAPSTLHITQNTEQE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 LHSPTVKLTTYPQTTIRKYVVQNPEQEPLSQFLRGSHFFPGNNVIYEKTIRKVEKLNTDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 LHSPTVKLTTYPQTTIRKYVVQNPEQEPLSQFLRGSHFFPGNNVIYEKTIRKVEKLNTDQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 GCHPQAQCHHHIIQQPQVIHSAHWQQPDSSQQIQAITGNNPISTHIGNELCHSGSSQICE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 GCHPQAQCHHHIIQQPQVIHSAHWQQPDSSQQIQAITGNNPISTHIGNELCHSGSSQICE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 QVIIQDDGPEKLDPRYFGELLADLSRKNTDLYHCLLEHLQRIGGSKQDFESTDESEDIES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 QVIIQDDGPEKLDPRYFGELLADLSRKNTDLYHCLLEHLQRIGGSKQDFESTDESEDIES
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE6 LIPKGLSEFTKQQIRYILQMRGMSDKSLRLVLSTFSNIREELGHLQNDLTSLENDKMRLE
       ::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::
CCDS78 LIPKGLSEFTKQQIRYILQMRGMSDKSLRLVLSTFSNIREELGHLQNDMTSLENDKMRLE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE6 KDLSFKDTQLKEYEELLASVRANNHQQQQGLQDSSSKCQALEENNLSLRHTLSDMEYRLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 KDLSFKDTQLKEYEELLASVRANNHQQQQGLQDSSSKCQALEENNLSLRHTLSDMEYRLK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE6 ELEYCKRNLEQENQNLRMQVSETCTGPMLQAKMDEIGNHYTEMVKNLRMEKDREICRLRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 ELEYCKRNLEQENQNLRMQVSETCTGPMLQAKMDEIGNHYTEMVKNLRMEKDREICRLRS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE6 QLNQYHKDVSKREGSCSDFQFKLHELTSLLEEKDSLIKRQSEELSKLRQEIYSSHNQPST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 QLNQYHKDVSKREGSCSDFQFKLHELTSLLEEKDSLIKRQSEELSKLRQEIYSSHNQPST
              490       500       510       520       530       540

              550       560       570       580       590     
pF1KE6 GGRTTITTKKYRTQYPILGLLYDDYEYIPPGSETQTIVIEKTEDKYTCVSSLGHF
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 GGRTTITTKKYRTQYPILGLLYDDYEYIPPGSETQTIVIEKTEDKYTCVSSLGHF
              550       560       570       580       590     

>>CCDS14452.1 POF1B gene_id:79983|Hs108|chrX              (589 aa)
 initn: 3931 init1: 3931 opt: 3931  Z-score: 2759.3  bits: 520.6 E(32554): 2.2e-147
Smith-Waterman score: 3931; 99.8% identity (100.0% similar) in 588 aa overlap (1-588:1-588)

               10        20        30        40        50        60
pF1KE6 MSSSYWSETSSSSCGTQQLPEVLQCQPQHYHCYHQSSQAQQPPEKNVVYERVRTYSGPMN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MSSSYWSETSSSSCGTQQLPEVLQCQPQHYHCYHQSSQAQQPPEKNVVYERVRTYSGPMN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 KVVQALDPFNSREVLSPLKTTSSYQNLVWSDHSQELHSPTLKISTCAPSTLHITQNTEQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 KVVQALDPFNSREVLSPLKTTSSYQNLVWSDHSQELHSPTLKISTCAPSTLHITQNTEQE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 LHSPTVKLTTYPQTTIRKYVVQNPEQEPLSQFLRGSHFFPGNNVIYEKTIRKVEKLNTDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LHSPTVKLTTYPQTTIRKYVVQNPEQEPLSQFLRGSHFFPGNNVIYEKTIRKVEKLNTDQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 GCHPQAQCHHHIIQQPQVIHSAHWQQPDSSQQIQAITGNNPISTHIGNELCHSGSSQICE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GCHPQAQCHHHIIQQPQVIHSAHWQQPDSSQQIQAITGNNPISTHIGNELCHSGSSQICE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 QVIIQDDGPEKLDPRYFGELLADLSRKNTDLYHCLLEHLQRIGGSKQDFESTDESEDIES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 QVIIQDDGPEKLDPRYFGELLADLSRKNTDLYHCLLEHLQRIGGSKQDFESTDESEDIES
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE6 LIPKGLSEFTKQQIRYILQMRGMSDKSLRLVLSTFSNIREELGHLQNDLTSLENDKMRLE
       ::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::
CCDS14 LIPKGLSEFTKQQIRYILQMRGMSDKSLRLVLSTFSNIREELGHLQNDMTSLENDKMRLE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE6 KDLSFKDTQLKEYEELLASVRANNHQQQQGLQDSSSKCQALEENNLSLRHTLSDMEYRLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 KDLSFKDTQLKEYEELLASVRANNHQQQQGLQDSSSKCQALEENNLSLRHTLSDMEYRLK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE6 ELEYCKRNLEQENQNLRMQVSETCTGPMLQAKMDEIGNHYTEMVKNLRMEKDREICRLRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ELEYCKRNLEQENQNLRMQVSETCTGPMLQAKMDEIGNHYTEMVKNLRMEKDREICRLRS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE6 QLNQYHKDVSKREGSCSDFQFKLHELTSLLEEKDSLIKRQSEELSKLRQEIYSSHNQPST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 QLNQYHKDVSKREGSCSDFQFKLHELTSLLEEKDSLIKRQSEELSKLRQEIYSSHNQPST
              490       500       510       520       530       540

              550       560       570       580       590     
pF1KE6 GGRTTITTKKYRTQYPILGLLYDDYEYIPPGSETQTIVIEKTEDKYTCVSSLGHF
       ::::::::::::::::::::::::::::::::::::::::::::::::       
CCDS14 GGRTTITTKKYRTQYPILGLLYDDYEYIPPGSETQTIVIEKTEDKYTCP      
              550       560       570       580               




595 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 13:12:32 2016 done: Tue Nov  8 13:12:32 2016
 Total Scan time:  2.650 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]