FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1491, 407 aa 1>>>pF1KE1491 407 - 407 aa - 407 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 12.3089+/-0.000359; mu= -14.5613+/- 0.022 mean_var=374.4809+/-78.231, 0's: 0 Z-trim(124.2): 15 B-trim: 0 in 0/60 Lambda= 0.066276 statistics sampled from 45476 (45491) to 45476 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.809), E-opt: 0.2 (0.533), width: 16 Scan time: 10.540 The best scores are: opt bits E(85289) XP_005260314 (OMIM: 610650) PREDICTED: proteasomal ( 407) 2682 269.8 8.3e-72 NP_783163 (OMIM: 610650) proteasomal ubiquitin rec ( 407) 2682 269.8 8.3e-72 NP_008933 (OMIM: 610650) proteasomal ubiquitin rec ( 407) 2682 269.8 8.3e-72 XP_016883092 (OMIM: 610650) PREDICTED: proteasomal ( 414) 2658 267.6 4.1e-71 XP_016883091 (OMIM: 610650) PREDICTED: proteasomal ( 414) 2658 267.6 4.1e-71 XP_016883093 (OMIM: 610650) PREDICTED: proteasomal ( 414) 2658 267.6 4.1e-71 XP_011526805 (OMIM: 610650) PREDICTED: proteasomal ( 369) 2232 226.8 6.9e-59 XP_016883094 (OMIM: 610650) PREDICTED: proteasomal ( 376) 2208 224.5 3.4e-58 NP_001268366 (OMIM: 610650) proteasomal ubiquitin ( 368) 1924 197.3 5e-50 NP_001268367 (OMIM: 610650) proteasomal ubiquitin ( 368) 1924 197.3 5e-50 XP_016883096 (OMIM: 610650) PREDICTED: proteasomal ( 375) 1900 195.0 2.5e-49 XP_016883095 (OMIM: 610650) PREDICTED: proteasomal ( 375) 1900 195.0 2.5e-49 XP_016883098 (OMIM: 610650) PREDICTED: proteasomal ( 275) 1761 181.7 2e-45 XP_016883097 (OMIM: 610650) PREDICTED: proteasomal ( 282) 1737 179.4 9.8e-45 XP_016883099 (OMIM: 610650) PREDICTED: proteasomal ( 237) 1311 138.6 1.5e-32 >>XP_005260314 (OMIM: 610650) PREDICTED: proteasomal ubi (407 aa) initn: 2682 init1: 2682 opt: 2682 Z-score: 1410.1 bits: 269.8 E(85289): 8.3e-72 Smith-Waterman score: 2682; 100.0% identity (100.0% similar) in 407 aa overlap (1-407:1-407) 10 20 30 40 50 60 pF1KE1 MTTSGALFPSLVPGSRGASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MTTSGALFPSLVPGSRGASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFC 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 WKDRTSGNVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 WKDRTSGNVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEH 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 CRKVNEYLNNPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 CRKVNEYLNNPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 GGLGALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 GGLGALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASAT 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 SPSPAPSSGNGASTAASPTQPIQLSDLQSILATMNVPAGPAGGQQVDLASVLTPEIMAPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 SPSPAPSSGNGASTAASPTQPIQLSDLQSILATMNVPAGPAGGQQVDLASVLTPEIMAPI 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 LANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLGPLMCQFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 LANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLGPLMCQFG 310 320 330 340 350 360 370 380 390 400 pF1KE1 LPAEAVEAANKGDVEAFAKAMQNNAKPEQKEGDTKDKKDEEEDMSLD ::::::::::::::::::::::::::::::::::::::::::::::: XP_005 LPAEAVEAANKGDVEAFAKAMQNNAKPEQKEGDTKDKKDEEEDMSLD 370 380 390 400 >>NP_783163 (OMIM: 610650) proteasomal ubiquitin recepto (407 aa) initn: 2682 init1: 2682 opt: 2682 Z-score: 1410.1 bits: 269.8 E(85289): 8.3e-72 Smith-Waterman score: 2682; 100.0% identity (100.0% similar) in 407 aa overlap (1-407:1-407) 10 20 30 40 50 60 pF1KE1 MTTSGALFPSLVPGSRGASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_783 MTTSGALFPSLVPGSRGASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFC 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 WKDRTSGNVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_783 WKDRTSGNVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEH 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 CRKVNEYLNNPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_783 CRKVNEYLNNPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 GGLGALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_783 GGLGALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASAT 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 SPSPAPSSGNGASTAASPTQPIQLSDLQSILATMNVPAGPAGGQQVDLASVLTPEIMAPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_783 SPSPAPSSGNGASTAASPTQPIQLSDLQSILATMNVPAGPAGGQQVDLASVLTPEIMAPI 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 LANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLGPLMCQFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_783 LANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLGPLMCQFG 310 320 330 340 350 360 370 380 390 400 pF1KE1 LPAEAVEAANKGDVEAFAKAMQNNAKPEQKEGDTKDKKDEEEDMSLD ::::::::::::::::::::::::::::::::::::::::::::::: NP_783 LPAEAVEAANKGDVEAFAKAMQNNAKPEQKEGDTKDKKDEEEDMSLD 370 380 390 400 >>NP_008933 (OMIM: 610650) proteasomal ubiquitin recepto (407 aa) initn: 2682 init1: 2682 opt: 2682 Z-score: 1410.1 bits: 269.8 E(85289): 8.3e-72 Smith-Waterman score: 2682; 100.0% identity (100.0% similar) in 407 aa overlap (1-407:1-407) 10 20 30 40 50 60 pF1KE1 MTTSGALFPSLVPGSRGASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_008 MTTSGALFPSLVPGSRGASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFC 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 WKDRTSGNVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_008 WKDRTSGNVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEH 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 CRKVNEYLNNPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_008 CRKVNEYLNNPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 GGLGALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_008 GGLGALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASAT 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 SPSPAPSSGNGASTAASPTQPIQLSDLQSILATMNVPAGPAGGQQVDLASVLTPEIMAPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_008 SPSPAPSSGNGASTAASPTQPIQLSDLQSILATMNVPAGPAGGQQVDLASVLTPEIMAPI 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 LANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLGPLMCQFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_008 LANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLGPLMCQFG 310 320 330 340 350 360 370 380 390 400 pF1KE1 LPAEAVEAANKGDVEAFAKAMQNNAKPEQKEGDTKDKKDEEEDMSLD ::::::::::::::::::::::::::::::::::::::::::::::: NP_008 LPAEAVEAANKGDVEAFAKAMQNNAKPEQKEGDTKDKKDEEEDMSLD 370 380 390 400 >>XP_016883092 (OMIM: 610650) PREDICTED: proteasomal ubi (414 aa) initn: 1423 init1: 1423 opt: 2658 Z-score: 1397.6 bits: 267.6 E(85289): 4.1e-71 Smith-Waterman score: 2658; 98.3% identity (98.3% similar) in 414 aa overlap (1-407:1-414) 10 20 30 40 50 60 pF1KE1 MTTSGALFPSLVPGSRGASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MTTSGALFPSLVPGSRGASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFC 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 WKDRTSGNVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 WKDRTSGNVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEH 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 CRKVNEYLNNPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 CRKVNEYLNNPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGL 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 GGLGALTGPGLASLLGSSGPPGSSSSSS-------SRSQSAAVTPSSTTSSTRATPAPSA :::::::::::::::::::::::::::: ::::::::::::::::::::::::: XP_016 GGLGALTGPGLASLLGSSGPPGSSSSSSGALSLRSSRSQSAAVTPSSTTSSTRATPAPSA 190 200 210 220 230 240 240 250 260 270 280 290 pF1KE1 PAAASATSPSPAPSSGNGASTAASPTQPIQLSDLQSILATMNVPAGPAGGQQVDLASVLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 PAAASATSPSPAPSSGNGASTAASPTQPIQLSDLQSILATMNVPAGPAGGQQVDLASVLT 250 260 270 280 290 300 300 310 320 330 340 350 pF1KE1 PEIMAPILANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 PEIMAPILANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLG 310 320 330 340 350 360 360 370 380 390 400 pF1KE1 PLMCQFGLPAEAVEAANKGDVEAFAKAMQNNAKPEQKEGDTKDKKDEEEDMSLD :::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 PLMCQFGLPAEAVEAANKGDVEAFAKAMQNNAKPEQKEGDTKDKKDEEEDMSLD 370 380 390 400 410 >>XP_016883091 (OMIM: 610650) PREDICTED: proteasomal ubi (414 aa) initn: 1423 init1: 1423 opt: 2658 Z-score: 1397.6 bits: 267.6 E(85289): 4.1e-71 Smith-Waterman score: 2658; 98.3% identity (98.3% similar) in 414 aa overlap (1-407:1-414) 10 20 30 40 50 60 pF1KE1 MTTSGALFPSLVPGSRGASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MTTSGALFPSLVPGSRGASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFC 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 WKDRTSGNVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 WKDRTSGNVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEH 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 CRKVNEYLNNPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 CRKVNEYLNNPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGL 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 GGLGALTGPGLASLLGSSGPPGSSSSSS-------SRSQSAAVTPSSTTSSTRATPAPSA :::::::::::::::::::::::::::: ::::::::::::::::::::::::: XP_016 GGLGALTGPGLASLLGSSGPPGSSSSSSGALSLRSSRSQSAAVTPSSTTSSTRATPAPSA 190 200 210 220 230 240 240 250 260 270 280 290 pF1KE1 PAAASATSPSPAPSSGNGASTAASPTQPIQLSDLQSILATMNVPAGPAGGQQVDLASVLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 PAAASATSPSPAPSSGNGASTAASPTQPIQLSDLQSILATMNVPAGPAGGQQVDLASVLT 250 260 270 280 290 300 300 310 320 330 340 350 pF1KE1 PEIMAPILANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 PEIMAPILANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLG 310 320 330 340 350 360 360 370 380 390 400 pF1KE1 PLMCQFGLPAEAVEAANKGDVEAFAKAMQNNAKPEQKEGDTKDKKDEEEDMSLD :::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 PLMCQFGLPAEAVEAANKGDVEAFAKAMQNNAKPEQKEGDTKDKKDEEEDMSLD 370 380 390 400 410 >>XP_016883093 (OMIM: 610650) PREDICTED: proteasomal ubi (414 aa) initn: 1423 init1: 1423 opt: 2658 Z-score: 1397.6 bits: 267.6 E(85289): 4.1e-71 Smith-Waterman score: 2658; 98.3% identity (98.3% similar) in 414 aa overlap (1-407:1-414) 10 20 30 40 50 60 pF1KE1 MTTSGALFPSLVPGSRGASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MTTSGALFPSLVPGSRGASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFC 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 WKDRTSGNVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 WKDRTSGNVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEH 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 CRKVNEYLNNPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 CRKVNEYLNNPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGL 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 GGLGALTGPGLASLLGSSGPPGSSSSSS-------SRSQSAAVTPSSTTSSTRATPAPSA :::::::::::::::::::::::::::: ::::::::::::::::::::::::: XP_016 GGLGALTGPGLASLLGSSGPPGSSSSSSGALSLRSSRSQSAAVTPSSTTSSTRATPAPSA 190 200 210 220 230 240 240 250 260 270 280 290 pF1KE1 PAAASATSPSPAPSSGNGASTAASPTQPIQLSDLQSILATMNVPAGPAGGQQVDLASVLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 PAAASATSPSPAPSSGNGASTAASPTQPIQLSDLQSILATMNVPAGPAGGQQVDLASVLT 250 260 270 280 290 300 300 310 320 330 340 350 pF1KE1 PEIMAPILANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 PEIMAPILANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLG 310 320 330 340 350 360 360 370 380 390 400 pF1KE1 PLMCQFGLPAEAVEAANKGDVEAFAKAMQNNAKPEQKEGDTKDKKDEEEDMSLD :::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 PLMCQFGLPAEAVEAANKGDVEAFAKAMQNNAKPEQKEGDTKDKKDEEEDMSLD 370 380 390 400 410 >>XP_011526805 (OMIM: 610650) PREDICTED: proteasomal ubi (369 aa) initn: 2232 init1: 2232 opt: 2232 Z-score: 1178.2 bits: 226.8 E(85289): 6.9e-59 Smith-Waterman score: 2232; 100.0% identity (100.0% similar) in 338 aa overlap (1-338:1-338) 10 20 30 40 50 60 pF1KE1 MTTSGALFPSLVPGSRGASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MTTSGALFPSLVPGSRGASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFC 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 WKDRTSGNVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 WKDRTSGNVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEH 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 CRKVNEYLNNPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 CRKVNEYLNNPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 GGLGALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GGLGALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASAT 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 SPSPAPSSGNGASTAASPTQPIQLSDLQSILATMNVPAGPAGGQQVDLASVLTPEIMAPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 SPSPAPSSGNGASTAASPTQPIQLSDLQSILATMNVPAGPAGGQQVDLASVLTPEIMAPI 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 LANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLGPLMCQFG :::::::::::::::::::::::::::::::::::::: XP_011 LANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQMWKRLPKPCRTTPSPSRKRATR 310 320 330 340 350 360 370 380 390 400 pF1KE1 LPAEAVEAANKGDVEAFAKAMQNNAKPEQKEGDTKDKKDEEEDMSLD XP_011 RTRRTKRRT >>XP_016883094 (OMIM: 610650) PREDICTED: proteasomal ubi (376 aa) initn: 1696 init1: 1415 opt: 2208 Z-score: 1165.7 bits: 224.5 E(85289): 3.4e-58 Smith-Waterman score: 2208; 98.0% identity (98.0% similar) in 345 aa overlap (1-338:1-345) 10 20 30 40 50 60 pF1KE1 MTTSGALFPSLVPGSRGASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MTTSGALFPSLVPGSRGASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFC 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 WKDRTSGNVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 WKDRTSGNVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEH 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 CRKVNEYLNNPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 CRKVNEYLNNPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGL 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 GGLGALTGPGLASLLGSSGPPGSSSSSS-------SRSQSAAVTPSSTTSSTRATPAPSA :::::::::::::::::::::::::::: ::::::::::::::::::::::::: XP_016 GGLGALTGPGLASLLGSSGPPGSSSSSSGALSLRSSRSQSAAVTPSSTTSSTRATPAPSA 190 200 210 220 230 240 240 250 260 270 280 290 pF1KE1 PAAASATSPSPAPSSGNGASTAASPTQPIQLSDLQSILATMNVPAGPAGGQQVDLASVLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 PAAASATSPSPAPSSGNGASTAASPTQPIQLSDLQSILATMNVPAGPAGGQQVDLASVLT 250 260 270 280 290 300 300 310 320 330 340 350 pF1KE1 PEIMAPILANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLG ::::::::::::::::::::::::::::::::::::::::::::: XP_016 PEIMAPILANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQMWKRLPKPCRTTPSP 310 320 330 340 350 360 360 370 380 390 400 pF1KE1 PLMCQFGLPAEAVEAANKGDVEAFAKAMQNNAKPEQKEGDTKDKKDEEEDMSLD XP_016 SRKRATRRTRRTKRRT 370 >>NP_001268366 (OMIM: 610650) proteasomal ubiquitin rece (368 aa) initn: 1924 init1: 1924 opt: 1924 Z-score: 1019.1 bits: 197.3 E(85289): 5e-50 Smith-Waterman score: 2308; 90.4% identity (90.4% similar) in 407 aa overlap (1-407:1-368) 10 20 30 40 50 60 pF1KE1 MTTSGALFPSLVPGSRGASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MTTSGALFPSLVPGSRGASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFC 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 WKDRTSGNVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEH ::::::::::: :::::::::: NP_001 WKDRTSGNVED---------------------------------------EPKTDQDEEH 70 80 130 140 150 160 170 180 pF1KE1 CRKVNEYLNNPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 CRKVNEYLNNPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGL 90 100 110 120 130 140 190 200 210 220 230 240 pF1KE1 GGLGALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GGLGALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASAT 150 160 170 180 190 200 250 260 270 280 290 300 pF1KE1 SPSPAPSSGNGASTAASPTQPIQLSDLQSILATMNVPAGPAGGQQVDLASVLTPEIMAPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SPSPAPSSGNGASTAASPTQPIQLSDLQSILATMNVPAGPAGGQQVDLASVLTPEIMAPI 210 220 230 240 250 260 310 320 330 340 350 360 pF1KE1 LANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLGPLMCQFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLGPLMCQFG 270 280 290 300 310 320 370 380 390 400 pF1KE1 LPAEAVEAANKGDVEAFAKAMQNNAKPEQKEGDTKDKKDEEEDMSLD ::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LPAEAVEAANKGDVEAFAKAMQNNAKPEQKEGDTKDKKDEEEDMSLD 330 340 350 360 >>NP_001268367 (OMIM: 610650) proteasomal ubiquitin rece (368 aa) initn: 1924 init1: 1924 opt: 1924 Z-score: 1019.1 bits: 197.3 E(85289): 5e-50 Smith-Waterman score: 2308; 90.4% identity (90.4% similar) in 407 aa overlap (1-407:1-368) 10 20 30 40 50 60 pF1KE1 MTTSGALFPSLVPGSRGASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MTTSGALFPSLVPGSRGASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFC 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 WKDRTSGNVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEH ::::::::::: :::::::::: NP_001 WKDRTSGNVED---------------------------------------EPKTDQDEEH 70 80 130 140 150 160 170 180 pF1KE1 CRKVNEYLNNPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 CRKVNEYLNNPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGL 90 100 110 120 130 140 190 200 210 220 230 240 pF1KE1 GGLGALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GGLGALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASAT 150 160 170 180 190 200 250 260 270 280 290 300 pF1KE1 SPSPAPSSGNGASTAASPTQPIQLSDLQSILATMNVPAGPAGGQQVDLASVLTPEIMAPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SPSPAPSSGNGASTAASPTQPIQLSDLQSILATMNVPAGPAGGQQVDLASVLTPEIMAPI 210 220 230 240 250 260 310 320 330 340 350 360 pF1KE1 LANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLGPLMCQFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLGPLMCQFG 270 280 290 300 310 320 370 380 390 400 pF1KE1 LPAEAVEAANKGDVEAFAKAMQNNAKPEQKEGDTKDKKDEEEDMSLD ::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LPAEAVEAANKGDVEAFAKAMQNNAKPEQKEGDTKDKKDEEEDMSLD 330 340 350 360 407 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 01:04:24 2016 done: Mon Nov 7 01:04:25 2016 Total Scan time: 10.540 Total Display time: 0.050 Function used was FASTA [36.3.4 Apr, 2011]