FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB7579, 220 aa 1>>>pF1KB7579 220 - 220 aa - 220 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.8454+/-0.000311; mu= 9.3174+/- 0.020 mean_var=157.4002+/-31.333, 0's: 0 Z-trim(121.7): 7 B-trim: 312 in 1/58 Lambda= 0.102228 statistics sampled from 38658 (38676) to 38658 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.792), E-opt: 0.2 (0.453), width: 16 Scan time: 6.090 The best scores are: opt bits E(85289) NP_003855 (OMIM: 603378) histone deacetylase compl ( 220) 1468 227.2 1.6e-59 NP_078908 (OMIM: 610398) histone deacetylase compl ( 183) 824 132.2 5.6e-31 NP_001124534 (OMIM: 610398) histone deacetylase co ( 142) 341 60.8 1.3e-09 NP_001124535 (OMIM: 610398) histone deacetylase co ( 137) 305 55.5 5.1e-08 >>NP_003855 (OMIM: 603378) histone deacetylase complex s (220 aa) initn: 1468 init1: 1468 opt: 1468 Z-score: 1189.4 bits: 227.2 E(85289): 1.6e-59 Smith-Waterman score: 1468; 100.0% identity (100.0% similar) in 220 aa overlap (1-220:1-220) 10 20 30 40 50 60 pF1KB7 MNGFTPDEMSRGGDAAAAVAAVVAAAAAAASAGNGTGAGTGAEVPGAGAVSAAGPPGAAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 MNGFTPDEMSRGGDAAAAVAAVVAAAAAAASAGNGTGAGTGAEVPGAGAVSAAGPPGAAG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB7 PGPGQLCCLREDGERCGRAAGNASFSKRIQKSISQKKVKIELDKSARHLYICDYHKNLIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 PGPGQLCCLREDGERCGRAAGNASFSKRIQKSISQKKVKIELDKSARHLYICDYHKNLIQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB7 SVRNRRKRKGSDDDGGDSPVQDIDTPEVDLYQLQVNTLRRYKRHFKLPTRPGLNKAQLVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 SVRNRRKRKGSDDDGGDSPVQDIDTPEVDLYQLQVNTLRRYKRHFKLPTRPGLNKAQLVE 130 140 150 160 170 180 190 200 210 220 pF1KB7 IVGCHFRSIPVNEKDTLTYFIYSVKNDKNKSDLKVDSGVH :::::::::::::::::::::::::::::::::::::::: NP_003 IVGCHFRSIPVNEKDTLTYFIYSVKNDKNKSDLKVDSGVH 190 200 210 220 >>NP_078908 (OMIM: 610398) histone deacetylase complex s (183 aa) initn: 910 init1: 428 opt: 824 Z-score: 677.1 bits: 132.2 E(85289): 5.6e-31 Smith-Waterman score: 824; 71.9% identity (87.1% similar) in 171 aa overlap (51-218:10-179) 30 40 50 60 70 pF1KB7 AVVAAAAAAASAGNGTGAGTGAEVPGAGAVSAAGPPGA---AGPGPGQLCCLREDGERCG : :::.: :.:: :: ::: :::::: NP_078 MNGFSTEEDSREGPPAAPAAAAPGYGQSCCLIEDGERCV 10 20 30 80 90 100 110 120 130 pF1KB7 RAAGNASFSKRIQKSISQKKVKIELDKSARHLYICDYHKNLIQSVRNRRKRKGSDDDGGD : :::::::::.::::::::.:...:::.:::::::.:::.::::::.:::: ::: ::: NP_078 RPAGNASFSKRVQKSISQKKLKLDIDKSVRHLYICDFHKNFIQSVRNKRKRKTSDD-GGD 40 50 60 70 80 90 140 150 160 170 180 190 pF1KB7 SPVQDIDTPEVDLYQLQVNTLRRYKRHFKLPTRPGLNKAQLVEIVGCHFRSIPVNEKDTL :: .: : :::::.:::::::::::::.:: ::::.:::::.: :. :::.::::::.:: NP_078 SPEHDTDIPEVDLFQLQVNTLRRYKRHYKLQTRPGFNKAQLAETVSRHFRNIPVNEKETL 100 110 120 130 140 150 200 210 220 pF1KB7 TYFIYSVKNDKNKSDLKVDSGVH .:::: ::..:.. : : ..: NP_078 AYFIYMVKSNKSRLDQKSEGGKQLE 160 170 180 >>NP_001124534 (OMIM: 610398) histone deacetylase comple (142 aa) initn: 597 init1: 334 opt: 341 Z-score: 293.5 bits: 60.8 E(85289): 1.3e-09 Smith-Waterman score: 507; 53.2% identity (65.5% similar) in 171 aa overlap (51-218:10-138) 30 40 50 60 70 pF1KB7 AVVAAAAAAASAGNGTGAGTGAEVPGAGAVSAAGPPGA---AGPGPGQLCCLREDGERCG : :::.: :.:: :: ::: :::::: NP_001 MNGFSTEEDSREGPPAAPAAAAPGYGQSCCLIEDGERCV 10 20 30 80 90 100 110 120 130 pF1KB7 RAAGNASFSKRIQKSISQKKVKIELDKSARHLYICDYHKNLIQSVRNRRKRKGSDDDGGD : :::::::::.::::::::.:...::: NP_001 RPAGNASFSKRVQKSISQKKLKLDIDKS-------------------------------- 40 50 60 140 150 160 170 180 190 pF1KB7 SPVQDIDTPEVDLYQLQVNTLRRYKRHFKLPTRPGLNKAQLVEIVGCHFRSIPVNEKDTL :::.:::::::::::::.:: ::::.:::::.: :. :::.::::::.:: NP_001 ----------VDLFQLQVNTLRRYKRHYKLQTRPGFNKAQLAETVSRHFRNIPVNEKETL 70 80 90 100 110 200 210 220 pF1KB7 TYFIYSVKNDKNKSDLKVDSGVH .:::: ::..:.. : : ..: NP_001 AYFIYMVKSNKSRLDQKSEGGKQLE 120 130 140 >>NP_001124535 (OMIM: 610398) histone deacetylase comple (137 aa) initn: 568 init1: 305 opt: 305 Z-score: 265.0 bits: 55.5 E(85289): 5.1e-08 Smith-Waterman score: 468; 50.9% identity (62.6% similar) in 171 aa overlap (51-218:10-133) 30 40 50 60 70 pF1KB7 AVVAAAAAAASAGNGTGAGTGAEVPGAGAVSAAGPPGA---AGPGPGQLCCLREDGERCG : :::.: :.:: :: ::: :::::: NP_001 MNGFSTEEDSREGPPAAPAAAAPGYGQSCCLIEDGERCV 10 20 30 80 90 100 110 120 130 pF1KB7 RAAGNASFSKRIQKSISQKKVKIELDKSARHLYICDYHKNLIQSVRNRRKRKGSDDDGGD : :::::::::.::::::::.:...::: NP_001 RPAGNASFSKRVQKSISQKKLKLDIDKS-------------------------------- 40 50 60 140 150 160 170 180 190 pF1KB7 SPVQDIDTPEVDLYQLQVNTLRRYKRHFKLPTRPGLNKAQLVEIVGCHFRSIPVNEKDTL ::::::::::::.:: ::::.:::::.: :. :::.::::::.:: NP_001 ---------------LQVNTLRRYKRHYKLQTRPGFNKAQLAETVSRHFRNIPVNEKETL 70 80 90 100 110 200 210 220 pF1KB7 TYFIYSVKNDKNKSDLKVDSGVH .:::: ::..:.. : : ..: NP_001 AYFIYMVKSNKSRLDQKSEGGKQLE 120 130 220 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 17:32:16 2016 done: Mon Nov 7 17:32:16 2016 Total Scan time: 6.090 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]