FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB7579, 220 aa 1>>>pF1KB7579 220 - 220 aa - 220 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.1686+/-0.000751; mu= 7.7409+/- 0.045 mean_var=159.1795+/-32.745, 0's: 0 Z-trim(114.8): 13 B-trim: 0 in 0/53 Lambda= 0.101655 statistics sampled from 15346 (15353) to 15346 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.8), E-opt: 0.2 (0.472), width: 16 Scan time: 1.870 The best scores are: opt bits E(32554) CCDS3817.1 SAP30 gene_id:8819|Hs108|chr4 ( 220) 1468 226.0 1.5e-59 CCDS4326.1 SAP30L gene_id:79685|Hs108|chr5 ( 183) 824 131.4 3.5e-31 >>CCDS3817.1 SAP30 gene_id:8819|Hs108|chr4 (220 aa) initn: 1468 init1: 1468 opt: 1468 Z-score: 1182.6 bits: 226.0 E(32554): 1.5e-59 Smith-Waterman score: 1468; 100.0% identity (100.0% similar) in 220 aa overlap (1-220:1-220) 10 20 30 40 50 60 pF1KB7 MNGFTPDEMSRGGDAAAAVAAVVAAAAAAASAGNGTGAGTGAEVPGAGAVSAAGPPGAAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS38 MNGFTPDEMSRGGDAAAAVAAVVAAAAAAASAGNGTGAGTGAEVPGAGAVSAAGPPGAAG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB7 PGPGQLCCLREDGERCGRAAGNASFSKRIQKSISQKKVKIELDKSARHLYICDYHKNLIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS38 PGPGQLCCLREDGERCGRAAGNASFSKRIQKSISQKKVKIELDKSARHLYICDYHKNLIQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB7 SVRNRRKRKGSDDDGGDSPVQDIDTPEVDLYQLQVNTLRRYKRHFKLPTRPGLNKAQLVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS38 SVRNRRKRKGSDDDGGDSPVQDIDTPEVDLYQLQVNTLRRYKRHFKLPTRPGLNKAQLVE 130 140 150 160 170 180 190 200 210 220 pF1KB7 IVGCHFRSIPVNEKDTLTYFIYSVKNDKNKSDLKVDSGVH :::::::::::::::::::::::::::::::::::::::: CCDS38 IVGCHFRSIPVNEKDTLTYFIYSVKNDKNKSDLKVDSGVH 190 200 210 220 >>CCDS4326.1 SAP30L gene_id:79685|Hs108|chr5 (183 aa) initn: 910 init1: 428 opt: 824 Z-score: 673.2 bits: 131.4 E(32554): 3.5e-31 Smith-Waterman score: 824; 71.9% identity (87.1% similar) in 171 aa overlap (51-218:10-179) 30 40 50 60 70 pF1KB7 AVVAAAAAAASAGNGTGAGTGAEVPGAGAVSAAGPPGA---AGPGPGQLCCLREDGERCG : :::.: :.:: :: ::: :::::: CCDS43 MNGFSTEEDSREGPPAAPAAAAPGYGQSCCLIEDGERCV 10 20 30 80 90 100 110 120 130 pF1KB7 RAAGNASFSKRIQKSISQKKVKIELDKSARHLYICDYHKNLIQSVRNRRKRKGSDDDGGD : :::::::::.::::::::.:...:::.:::::::.:::.::::::.:::: ::: ::: CCDS43 RPAGNASFSKRVQKSISQKKLKLDIDKSVRHLYICDFHKNFIQSVRNKRKRKTSDD-GGD 40 50 60 70 80 90 140 150 160 170 180 190 pF1KB7 SPVQDIDTPEVDLYQLQVNTLRRYKRHFKLPTRPGLNKAQLVEIVGCHFRSIPVNEKDTL :: .: : :::::.:::::::::::::.:: ::::.:::::.: :. :::.::::::.:: CCDS43 SPEHDTDIPEVDLFQLQVNTLRRYKRHYKLQTRPGFNKAQLAETVSRHFRNIPVNEKETL 100 110 120 130 140 150 200 210 220 pF1KB7 TYFIYSVKNDKNKSDLKVDSGVH .:::: ::..:.. : : ..: CCDS43 AYFIYMVKSNKSRLDQKSEGGKQLE 160 170 180 220 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 17:32:15 2016 done: Mon Nov 7 17:32:15 2016 Total Scan time: 1.870 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]