FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4504, 528 aa
  1>>>pF1KE4504 528 - 528 aa - 528 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0757+/-0.000913; mu= 14.7644+/- 0.055
 mean_var=78.1726+/-15.662, 0's: 0 Z-trim(106.7): 14  B-trim: 105 in 1/50
 Lambda= 0.145060
 statistics sampled from 9154 (9161) to 9154 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.656), E-opt: 0.2 (0.281), width:  16
 Scan time:  3.460

The best scores are:                                      opt bits E(32554)
CCDS368.1 YARS gene_id:8565|Hs108|chr1             ( 528) 3456 733.0 2.1e-211
CCDS3674.1 AIMP1 gene_id:9255|Hs108|chr4           ( 312)  597 134.5 1.7e-31
CCDS47121.1 AIMP1 gene_id:9255|Hs108|chr4          ( 336)  597 134.6 1.8e-31


>>CCDS368.1 YARS gene_id:8565|Hs108|chr1                  (528 aa)
 initn: 3456 init1: 3456 opt: 3456  Z-score: 3908.9  bits: 733.0 E(32554): 2.1e-211
Smith-Waterman score: 3456; 100.0% identity (100.0% similar) in 528 aa overlap (1-528:1-528)

               10        20        30        40        50        60
pF1KE4 MGDAPSPEEKLHLITRNLQEVLGEEKLKEILKERELKIYWGTATTGKPHVAYFVPMSKIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 MGDAPSPEEKLHLITRNLQEVLGEEKLKEILKERELKIYWGTATTGKPHVAYFVPMSKIA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 DFLKAGCEVTILFADLHAYLDNMKAPWELLELRVSYYENVIKAMLESIGVPLEKLKFIKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 DFLKAGCEVTILFADLHAYLDNMKAPWELLELRVSYYENVIKAMLESIGVPLEKLKFIKG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 TDYQLSKEYTLDVYRLSSVVTQHDSKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 TDYQLSKEYTLDVYRLSSVVTQHDSKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 AQFGGIDQRKIFTFAEKYLPALGYSKRVHLMNPMVPGLTGSKMSSSEEESKIDLLDRKED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 AQFGGIDQRKIFTFAEKYLPALGYSKRVHLMNPMVPGLTGSKMSSSEEESKIDLLDRKED
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 VKKKLKKAFCEPGNVENNGVLSFIKHVLFPLKSEFVILRDEKWGGNKTYTAYVDLEKDFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 VKKKLKKAFCEPGNVENNGVLSFIKHVLFPLKSEFVILRDEKWGGNKTYTAYVDLEKDFA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 AEVVHPGDLKNSVEVALNKLLDPIREKFNTPALKKLASAAYPDPSKQKPMAKGPAKNSEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 AEVVHPGDLKNSVEVALNKLLDPIREKFNTPALKKLASAAYPDPSKQKPMAKGPAKNSEP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE4 EEVIPSRLDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 EEVIPSRLDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE4 VVLCNLKPQKMRGVESQGMLLCASIEGINRQVEPLDPPAGSAPGEHVFVKGYEKGQPDEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 VVLCNLKPQKMRGVESQGMLLCASIEGINRQVEPLDPPAGSAPGEHVFVKGYEKGQPDEE
              430       440       450       460       470       480

              490       500       510       520        
pF1KE4 LKPKKKVFEKLQADFKISEECIAQWKQTNFMTKLGSISCKSLKGGNIS
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 LKPKKKVFEKLQADFKISEECIAQWKQTNFMTKLGSISCKSLKGGNIS
              490       500       510       520        

>>CCDS3674.1 AIMP1 gene_id:9255|Hs108|chr4                (312 aa)
 initn: 564 init1: 391 opt: 597  Z-score: 678.9  bits: 134.5 E(32554): 1.7e-31
Smith-Waterman score: 597; 48.7% identity (76.4% similar) in 195 aa overlap (332-526:123-308)

             310       320       330       340       350       360 
pF1KE4 EVVHPGDLKNSVEVALNKLLDPIREKFNTPALKKLASAAYPDPSKQKPMAKGPAKNSEPE
                                     : .:. . .    .::. .: : : .:.: 
CCDS36 SENVIQSTAVTTVSSGTKEQIKGGTGDEKKAKEKIEKKGEKKEKKQQSIA-GSA-DSKPI
            100       110       120       130       140         150

             370       380       390       400       410       420 
pF1KE4 EVIPSRLDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVV
       .:  ::::.:.: :::..:::::::::::..::::  :::::::::. :: :..:.:.:.
CCDS36 DV--SRLDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVI
                160       170       180       190       200        

             430       440       450       460       470       480 
pF1KE4 VLCNLKPQKMRGVESQGMLLCASIEGINRQVEPLDPPAGSAPGEHVFVKGYEKGQPDEEL
       .:::::: ::::: ::.:..:::     ...: : :: ::.::...   ..  :.::.::
CCDS36 LLCNLKPAKMRGVLSQAMVMCASSP---EKIEILAPPNGSVPGDRITFDAFP-GEPDKEL
      210       220       230          240       250        260    

             490       500       510       520          
pF1KE4 KPKKKVFEKLQADFKISEECIAQWKQTNFMTKLGSISCKSLKGGNIS  
       .::::..:..: :.. ..::.: .: . : .: :.  :..   .:    
CCDS36 NPKKKIWEQIQPDLHTNDECVATYKGVPFEVK-GKGVCRAQTMSNSGIK
          270       280       290        300       310  

>>CCDS47121.1 AIMP1 gene_id:9255|Hs108|chr4               (336 aa)
 initn: 564 init1: 391 opt: 597  Z-score: 678.4  bits: 134.6 E(32554): 1.8e-31
Smith-Waterman score: 597; 48.7% identity (76.4% similar) in 195 aa overlap (332-526:147-332)

             310       320       330       340       350       360 
pF1KE4 EVVHPGDLKNSVEVALNKLLDPIREKFNTPALKKLASAAYPDPSKQKPMAKGPAKNSEPE
                                     : .:. . .    .::. .: : : .:.: 
CCDS47 SENVIQSTAVTTVSSGTKEQIKGGTGDEKKAKEKIEKKGEKKEKKQQSIA-GSA-DSKPI
        120       130       140       150       160         170    

             370       380       390       400       410       420 
pF1KE4 EVIPSRLDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVV
       .:  ::::.:.: :::..:::::::::::..::::  :::::::::. :: :..:.:.:.
CCDS47 DV--SRLDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVI
            180       190       200       210       220       230  

             430       440       450       460       470       480 
pF1KE4 VLCNLKPQKMRGVESQGMLLCASIEGINRQVEPLDPPAGSAPGEHVFVKGYEKGQPDEEL
       .:::::: ::::: ::.:..:::     ...: : :: ::.::...   ..  :.::.::
CCDS47 LLCNLKPAKMRGVLSQAMVMCASSP---EKIEILAPPNGSVPGDRITFDAFP-GEPDKEL
            240       250          260       270       280         

             490       500       510       520          
pF1KE4 KPKKKVFEKLQADFKISEECIAQWKQTNFMTKLGSISCKSLKGGNIS  
       .::::..:..: :.. ..::.: .: . : .: :.  :..   .:    
CCDS47 NPKKKIWEQIQPDLHTNDECVATYKGVPFEVK-GKGVCRAQTMSNSGIK
      290       300       310       320        330      




528 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 00:24:00 2016 done: Sun Nov  6 00:24:01 2016
 Total Scan time:  3.460 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]